RNA suppression of termination (kw:KW-1159)

Suppression of termination (also referred to as stop codon readthrough) is an alternate mechanism of translation to produce a protein with an extended C-terminus. It is used as a regulatory strategy by a large number of plant, animal and prokaryot viruses (see table below).
UAG amber and UGA opal codons are normally recognized by a release factor (eRF) instead of a tRNA, thereby stopping translation. Readthrough of these stop codons occurs when a tRNA partially recognizes UGA or UAG and allows translation to proceed further. This readthrough is induced either by a pseudoknot (MMTV) or by few nucleotides sequence after the stop. The readthrough signals of prokaryote, plant and mammal viruses are different and have different mechanisms which are still poorly understood. The efficiency of suppression of termination is globally poor: 5 to 30%.

The picture below describes MMTV suppression of termination.

image

<TD BGCOLOR="#CCFFFF" width="90"VALIGN="TOP">"Leviviridae":/by_species/163 <TD width="90"VALIGN="TOP">"Reoviridae":/by_species/104
Family Genus/TD> Virus RefSeq STOP codon Insertion Efficiency Position Reference
Allolevivirus Enterobacteria phage Qbeta NC_001890 UGA (opal) Trp 5% 1742
Carmotetraviridae Alphacarmotetravirus Providence virus NC_014126 UAG (amber) - - 2104
Luteoviridae Enamovirus Pea enation mosaic virus 1 NC_003629 UGA (opal) - - 4566
Luteovirus Barley yellow dwarf virus NC_004750 UAG (amber) - - 3458
Polerovirus Potato leafroll virus NC_001747 UAG (amber) - - 4317
Coltivirus Colorado tick fever virus NC_004180 UGA (opal) - - 1052
Retroviridae Gammaretrovirus Moloney murine leukemia virus NC_001501 UAG (amber) Gln 4-10% 1974
Epsilonretrovirus Walleye dermal sarcoma virus NC_001867 UAG (amber) - - 2545
Togaviridae Alphavirus Sindbis virus NC_001547 UGA (opal) - 10% 7598
Tombusviridae Aureusvirus Pothos latent virus NC_000939 UAG (amber) - - 791
Avenavirus Oat chlorotic stunt virus NC_003633 UAG (amber) - - 684
Carmovirus Carnation mottle virus NC_001265 UAG (amber) - - 805
Machlomovirus Maize chlorotic mottle virus NC_003627 UAG (amber) - - 1451
UGA (opal) - - 3199
Alphanecrovirus Tobbaco necrosis virus A NC_001777 UAG (amber) - - 666
Panicovirus Panicium mosaic virus NC_002598 UAG (amber) - - 1304
Tombusvirus Tomato bushy stunt virus NC_001554 UAG (amber) - - 1054
Virgaviridae Furovirus Soil-borne wheat mosaic virus NC_001367 UGA (opal) - - 4032
NC_002042 UGA (opal) - - 862
Pecluvirus Peanut clump virus NC_003672 UGA (opal) - - 3567
Pomovirus Potato mop-top virus NC_003723 UGA (opal) - - 4024
NC_003724 UAG (amber) - - 842
Tobamovirus Tobacco mosaic virus NC_002041 UGA (opal) Tyr, Gln, Leu 31% 3417
Tobravirus Tobacco rattle virus NC_003805 UGA (opal) Trp 5-25% 3764

Matching UniProtKB/Swiss-Prot entries

(all links/actions below point to uniprot.org website)

0 entry grouped by protein