Nanovirus (taxid:104766)

VIRION

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Non-enveloped, round, T=1 icosahedral symmetry, about 18-19 nm in diameter.
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GENOME

Multipartite ssDNA genome (+) composed of 6 to 8 circular segments about 1kb in size. Each ssDNA segment have a common stem-loop region and are encapsidated in a separate particle.
In addition to genomic DNA, up to 4 satellite-like DNAs are commonly found, usually encoding for accessory Rep proteins (para-Rep). These satellite-rep proteins are only able to initiate replication of their genomic DNA, unlike genomic encoded Master-Rep (M-Rep) which promotes replication of all 6-8 viral genomic ssDNAs (trans-replication).

GENE EXPRESSION

Each ssDNA genome segment is monocistronic.

ENZYMES

REPLICATION

NUCLEAR

  1. Virus penetrates into the host cell.
  2. Uncoating, the viral ssDNA genome penetrates into the nucleus.
  3. The ssDNA is converted into dsDNA with the participation of cellular factors.
  4. Bidirectional dsDNA transcription from the IR promoter produces viral mRNAs and translation of viral proteins.
  5. Replication is initiated by cleavage of the (+)strand by REP, and occurs by rolling circle producing ssDNA genomes.
  6. These newly synthesized ssDNA can either
    a) be converted to dsDNA and serve as a template for transcription/replication
    b) be encapsidated by CP and form virions that will be released in the extracellular space. c) be transported outside the nucleus, to a neighboring cell through plasmodesmata (cell-cell movement) with the help of viral movement proteins.

Host-virus interaction

Cell-cycle modulation

Nanovirus Clink protein is responsible for inhibiting host retinoblastoma protein and inducing transition from the G1 to S phase in preparation for virus replication since the virus targets differentiated non-dividing cells. .

Matching UniProtKB/Swiss-Prot entries

(all links/actions below point to uniprot.org website)

44 entries grouped by strain

11 entries

Faba bean necrotic yellows virus (isolate Egyptian EV1-93) (FBNYV) reference strain

Select_allDeselect_all
MREP_FBNY1 Master replication protein (M-Rep) (EC 2.7.7.-) (EC 3.1.21.-) (EC 3.6.1.-) (ATP-dependent helicase ...
REP1_FBNY1 Para-Rep C1 (Rep1) (EC 2.7.7.-) (EC 3.1.21.-) (EC 3.6.1.-) (ATP-dependent helicase C1) ...
REP9_FBNY1 Para-Rep C9 (Rep9) (EC 2.7.7.-) (EC 3.1.21.-) (EC 3.6.1.-) (ATP-dependent helicase C9) ...
REP7_FBNY1 Para-Rep C7 (Rep7) (EC 2.7.7.-) (EC 3.1.21.-) (EC 3.6.1.-) (ATP-dependent helicase C7) ...
CLINK_FBNY1 Cell cycle link protein (Clink)
U4_FBNY1 Protein U4
MVP_FBNY1 Putative movement protein (MP)
CAPSD_FBNY1 Capsid protein (CP) (Coat protein)
NSP_FBNY1 Putative nuclear shuttle protein
U1_FBNY1 Protein U1
U2_FBNY1 Protein U2

8 entries

Subterranean clover stunt virus (strain F) (SCSV) reference strain

Select_allDeselect_all
REP2_SCSVF Para-Rep C2 (Rep2) (EC 2.7.7.-) (EC 3.1.21.-) (EC 3.6.1.-) (Replication-associated protein of ...
REP6_SCSVF Para-Rep C6 (Rep6) (EC 2.7.7.-) (EC 3.1.21.-) (EC 3.6.1.-) (Replication-associated protein of ...
MREP_SCSVF Master replication protein (M-Rep) (EC 2.7.7.-) (EC 3.1.21.-) (EC 3.6.1.-)
MVP_SCSVF Putative movement protein (MP)
CLINK_SCSVF Cell cycle link protein (Clink)
NSP_SCSVF Putative nuclear shuttle protein
CAPSD_SCSVF Capsid protein (CP) (Coat protein)
U1_SCSVF Protein U1

12 entries

Milk vetch dwarf virus (isolate N) (MDV)

Select_allDeselect_all
MREP_MDV1 Master replication protein (M-Rep) (EC 2.7.7.-) (EC 3.1.21.-) (EC 3.6.1.-)
REP10_MDV1 Para-Rep C10 (Rep10) (EC 2.7.7.-) (EC 3.1.21.-) (EC 3.6.1.-) (Replication-associated protein of ...
REP3_MDV1 Para-Rep C3 (Rep3) (EC 2.7.7.-) (EC 3.1.21.-) (EC 3.6.1.-) (Replication-associated protein of ...
REP2_MDV1 Para-Rep C2 (Rep2) (EC 2.7.7.-) (EC 3.1.21.-) (EC 3.6.1.-) (Replication-associated protein of ...
REP1_MDV1 Para-Rep C1 (Rep1) (EC 2.7.7.-) (EC 3.1.21.-) (EC 3.6.1.-) (Replication-associated protein of ...
U4_MDV1 Protein U4
MVP_MDV1 Putative movement protein (MP)
NSP_MDV1 Putative nuclear shuttle protein
CLINK_MDV1 Cell cycle link protein (Clink)
CAPSD_MDV1 Capsid protein (CP) (Coat protein)
U2_MDV1 Protein U2
U1_MDV1 Protein U1

11 entries

Faba bean necrotic yellows virus (isolate SV292-88) (FBNYV)

Select_allDeselect_all
MREP_FBNY2 Master replication protein (M-Rep) (EC 2.7.7.-) (EC 3.1.21.-) (EC 3.6.1.-) (ATP-dependent helicase ...
REP1_FBNY2 Para-Rep C1 (Rep1) (EC 2.7.7.-) (EC 3.1.21.-) (EC 3.6.1.-) (ATP-dependent helicase C1) ...
REP7_FBNY2 Para-Rep C7 (Rep7) (EC 2.7.7.-) (EC 3.1.21.-) (EC 3.6.1.-) (ATP-dependent helicase C7) ...
REP9_FBNY2 Para-Rep C9 (Rep9) (EC 2.7.7.-) (EC 3.1.21.-) (EC 3.6.1.-) (ATP-dependent helicase C9) ...
MVP_FBNY2 Putative movement protein (MP)
CAPSD_FBNY2 Capsid protein (CP) (Coat protein)
NSP_FBNY2 Putative nuclear shuttle protein
CLINK_FBNY2 Cell cycle link protein (Clink)
U4_FBNY2 Protein U4
U1_FBNY2 Protein U1
U2_FBNY2 Protein U2

1 entry

Milk vetch dwarf virus (isolate 9) (MDV)

CAPSD_MDV9 Capsid protein (CP) (Coat protein)

1 entry

Subterranean clover stunt virus (strain J) (SCSV)

CAPSD_SCSVJ Capsid protein (CP) (Coat protein)
These structures were created with the help of Colabfold by Jason Nomburg, Nathan Price and Jennifer Doudna (ModelArchive).

Black medic leaf roll virus taxid:2038729

Protein ModelArchive
Capsid protein (Coat protein) ma-jd-viral-27227
Cell cycle link protein ma-jd-viral-46177
Master rplication initiator protein ma-jd-viral-17066
Movement protein ma-jd-viral-63676
Putative nuclear shuttle protein ma-jd-viral-27288
U1 protein ma-jd-viral-03427
U2 protein ma-jd-viral-00433
U4 protein ma-jd-viral-45560

Faba bean necrotic stunt virus taxid:283824

Protein ModelArchive
Capsid protein (Coat protein) ma-jd-viral-27224
Cell-cycle link protein (Clink) ma-jd-viral-46172
Master-replication initiator protein ma-jd-viral-17103
Movement protein ma-jd-viral-63675
Putative nuclear shuttle protein ma-jd-viral-27291
U1 protein ma-jd-viral-03432
U2 protein ma-jd-viral-00428
U4 protein ma-jd-viral-45555

Faba bean necrotic yellows virus taxid:59817

Protein ModelArchive
Capsid protein (Coat protein) ma-jd-viral-27219

Faba bean necrotic yellows virus (isolate Egyptian EV1-93) taxid:291603

Protein ModelArchive
Capsid protein (CP) (Coat protein) ma-jd-viral-27219
Cell cycle link protein (Clink) ma-jd-viral-46174
Master replication protein (M-Rep) (EC 2.7.7.-) (EC 3.1.21.-) (EC 3.6.1.-) (ATP-dependent helicase C2) (Replication-associated protein 2)... ma-jd-viral-17091
Protein U1 ma-jd-viral-03426
Protein U2 ma-jd-viral-00430
Protein U4 ma-jd-viral-45562
Putative movement protein (MP) ma-jd-viral-63674
Putative nuclear shuttle protein ma-jd-viral-27290

Milk vetch dwarf virus taxid:67585

Protein ModelArchive
Movement protein ma-jd-viral-63678

Milk vetch dwarf virus (isolate N) taxid:291605

Protein ModelArchive
Capsid protein (CP) (Coat protein) ma-jd-viral-27225
Cell cycle link protein (Clink) ma-jd-viral-46173
Protein U1 ma-jd-viral-03422
Protein U2 ma-jd-viral-00431
Putative movement protein (MP) ma-jd-viral-63678
Putative nuclear shuttle protein ma-jd-viral-27296

Pea necrotic yellow dwarf virus taxid:753670

Protein ModelArchive
Capsid protein (Coat protein) ma-jd-viral-27220
Clink ma-jd-viral-46178
Master replication initiator protein ma-jd-viral-17071
Movement protein ma-jd-viral-63670
Putative nuclear shuttle protein ma-jd-viral-27293
U1 protein ma-jd-viral-03425
U2 protein ma-jd-viral-00427
U4 protein ma-jd-viral-45558

Pea yellow stunt virus taxid:1436892

Protein ModelArchive
Capsid protein (Coat protein) ma-jd-viral-27222
Cell cycle link protein ma-jd-viral-46179
Master replication initiator protein ma-jd-viral-17093
Movement protein ma-jd-viral-63677
Putative nuclear shuttle protein ma-jd-viral-27289
U1 protein ma-jd-viral-03424
U2 protein ma-jd-viral-00432
U4 protein ma-jd-viral-45557