Host mRNA suppression by virus

Viruses have evolved ways of suppressing host mRNAs expression to favor their survival and maximize expression of their own mRNAs. Decimating cellular mRNAs eventually leads to shutoff of host proteins expression and gives viruses transcripts a competitive edge for access to the cellular translation machinery. Preventing the expression of host proteins is also a strategy to counteract the antiviral response.

mrna export mrna decay mrna processing


Some viruses interfere with host pre-mRNA processing function (splicing or polyadenylation), whereas other induce the host mRNAs degradation or block their export out of the nucleus.

Viruses inhibiting host mRNA splicing:

Family Virus Viral protein mRNA suppression strategy references
Orthomyxoviridae Influenza A virus NS1 Inhibition of polyadenylation & nuclear export
Herpesviridae HHV1, HHV2 (Simplexvirus) ICP27 Inhibition of splicing & nuclear export
VHS protein mRNA decay
HHV-8/KSHV (Gammaherpesvirinae) SOX protein mRNA decay
MHV68 (Rhadinovirus) SOX protein mRNA decay
EBV (Lymphocryptovirus) BGLF5 mRNA decay
Retroviridae HIV-1 VPR Inhibition of splicing
Coronaviridae SARS coronavirus NSP1 mRNA decay
Picornaviridae Poliovirus (Enterovirus) 2A protease Inhibition of nuclear export
Theiler’s virus (Cardiovirus) Leader protein Inhibition of nuclear export
HRV16 (Enterovirus) 3C protease Inhibition of nuclear export
HRV14 (Enterovirus) ? Inhibition of nuclear export
Rhabdoviridae Vesicular stomatitis virus (Vesiculovirus) M protein Inhibition of nuclear export
Adenoviridae Adenovirus (Mastadenovirus) ? Inhibition of nuclear export

Matching UniProtKB/Swiss-Prot entries

121 entries grouped by protein

All proteins are shown (view only 50 complete proteome entries)

Transcriptional regulator ICP27 (Immediate-early protein IE63) (Infected cell protein 27) (ICP27) (VMW63)

Select_all Deselect_all  
ICP27_HHV11Human herpesvirus 1 (strain 17) (HHV-1) (Human herpes simplex virus 1) reference strain
ICP27_HHV2HHuman herpesvirus 2 (strain HG52) (HHV-2) (Human herpes simplex virus 2) reference strain
ICP27_HHV1EHuman herpesvirus 1 (strain HFEM) (HHV-1) (Human herpes simplex virus 1)

Transcriptional regulator ICP27 (Immediate-early protein IE63) (Infected cell protein 27) (ICP27)

Non-structural protein 1 (NS1) (NS1A)

Select_all Deselect_all  
NS1_I96A0Influenza A virus (strain A/Goose/Guangdong/1/1996 H5N1 genotype Gs/Gd) reference strain
NS1_I34A1Influenza A virus (strain A/Puerto Rico/8/1934 H1N1) reference strain
NS1_I68A0Influenza A virus (strain A/Aichi/2/1968 H3N2)
NS1_I77A0Influenza A virus (strain A/Alaska/6/1977 H3N2)
NS1_I76A0Influenza A virus (strain A/Anas acuta/Primorje/695/1976 H2N3)
NS1_I60A0Influenza A virus (strain A/Ann Arbor/6/1960 H2N2)
NS1_I89A1Influenza A virus (strain A/Beijing/352/1989 H3N2)
NS1_I75A0Influenza A virus (strain A/Beijing/39/1975 H3N2)
NS1_I77AAInfluenza A virus (strain A/Brazil/11/1978 H1N1)
NS1_I18A0Influenza A virus (strain A/Brevig Mission/1/1918 H1N1) (Influenza A virus ...
NS1_I77AGInfluenza A virus (strain A/Budgerigar/Hokkaido/1/1977 H4N6)
NS1_I02A0Influenza A virus (strain A/Chicken/Brescia/1902 H7N7)
NS1_I49A0Influenza A virus (strain A/Chicken/Germany/n/1949 H10N7)
NS1_I97A0Influenza A virus (strain A/Chicken/Hong Kong/220/1997 H5N1 genotype Gs/Gd)
NS1_I02A2Influenza A virus (strain A/Chicken/Hong Kong/31.2/2002 H5N1 genotype X1)
NS1_I02A3Influenza A virus (strain A/Chicken/Hong Kong/37.4/2002 H5N1 genotype X2)
NS1_I01A3Influenza A virus (strain A/Chicken/Hong Kong/715.5/2001 H5N1 genotype E)
NS1_I02A5Influenza A virus (strain A/Chicken/Hong Kong/96.1/2002 H5N1 genotype Y)
NS1_I01A2Influenza A virus (strain A/Chicken/Hong Kong/FY150/2001 H5N1 genotype D)
NS1_I02A6Influenza A virus (strain A/Chicken/Hong Kong/YU22/2002 H5N1 genotype Z)
NS1_I01A1Influenza A virus (strain A/Chicken/Hong Kong/YU562/2001 H5N1 genotype B)
NS1_I83A5Influenza A virus (strain A/Chicken/Pennsylvania/1/1983 H5N2)
NS1_I83A6Influenza A virus (strain A/Chicken/Pennsylvania/1370/1983 H5N2)
NS1_I59A0Influenza A virus (strain A/Chicken/Scotland/1959 H5N1)
NS1_I03A1Influenza A virus (strain A/Chicken/Shantou/4231/2003 H5N1 genotype V)
NS1_I85A3Influenza A virus (strain A/Chicken/Victoria/1/1985 H7N7)
NS1_I83A1Influenza A virus (strain A/Chile/1/1983 H1N1)
NS1_I96A3Influenza A virus (strain A/China:Nanchang/11/1996 H1N1)
NS1_I76A2Influenza A virus (strain A/Duck/Alberta/60/1976 H12N5)
NS1_I56A1Influenza A virus (strain A/Duck/Czechoslovakia/1956 H4N6)
NS1_I56A2Influenza A virus (strain A/Duck/England/1/1956 H11N6)
NS1_I49A1Influenza A virus (strain A/Duck/Germany/1949 H10N7)
NS1_I80A6Influenza A virus (strain A/Duck/Hokkaido/8/1980 H3N8)
NS1_I00A0Influenza A virus (strain A/Duck/Hong Kong/2986.1/2000 H5N1 genotype C)
NS1_I69A0Influenza A virus (strain A/England/878/1969 H3N2)
NS1_I91A0Influenza A virus (strain A/Equine/Alaska/1/1991 H3N8)
NS1_I89A7Influenza A virus (strain A/Equine/Jillin/1/1989 H3N8)
NS1_I73A4Influenza A virus (strain A/Equine/London/1416/1973 H7N7)
NS1_I77A9Influenza A virus (strain A/Equine/New Market/1/1977 H7N7)
NS1_I56A3Influenza A virus (strain A/Equine/Prague/1/1956 H7N7)
NS1_I86A3Influenza A virus (strain A/Equine/Tennessee/5/1986 H3N8)
NS1_I47A0Influenza A virus (strain A/Fort Monmouth/1/1947 H1N1)
NS1_I50A0Influenza A virus (strain A/Fort Warren/1/1950 H1N1)
NS1_I34A0Influenza A virus (strain A/Fowl plague virus/Rostock/8/1934 H7N1)
NS1_I79A7Influenza A virus (strain A/Grey teal/Australia/2/1979 H4N4)
NS1_I02A1Influenza A virus (strain A/Guinea fowl/Hong Kong/38/2002 H5N1 genotype X0)
NS1_I78AFInfluenza A virus (strain A/Gull/Maryland/1824/1978 H13N6)
NS1_I77AFInfluenza A virus (strain A/Gull/Maryland/704/1977 H13N6)
NS1_I80ACInfluenza A virus (strain A/Gull/Massachusetts/26/1980 H13N6)
NS1_I80ADInfluenza A virus (strain A/Gull/Minnesota/945/1980 H13N6)
NS1_I36A0Influenza A virus (strain A/Henry/1936 H1N1)
NS1_I88A4Influenza A virus (strain A/Herring gull/DE/677/1988 H2N8)
NS1_I40A0Influenza A virus (strain A/Hickox/1940 H1N1)
NS1_I68A4Influenza A virus (strain A/Hong Kong/1/1968 H3N2)
NS1_I97A1Influenza A virus (strain A/Hong Kong/156/1997 H5N1 genotype Gs/Gd)
NS1_I03A0Influenza A virus (strain A/Hong Kong/212/2003 H5N1 genotype Z+)
NS1_I83A8Influenza A virus (strain A/Hong Kong/5/1983 H3N2)
NS1_I80AAInfluenza A virus (strain A/India/6263/1980 H1N1)
NS1_I57A0Influenza A virus (strain A/Japan/305/1957 H2N2)
NS1_I68A5Influenza A virus (strain A/Korea/426/1968 H2N2)
NS1_I54A0Influenza A virus (strain A/Leningrad/1/1954 H1N1)
NS1_I57A2Influenza A virus (strain A/Leningrad/134/17/1957 H2N2)
NS1_I57A1Influenza A virus (strain A/Leningrad/134/1957 H2N2)
NS1_I57A3Influenza A virus (strain A/Leningrad/134/47/1957 H2N2)
NS1_I54A2Influenza A virus (strain A/Malaysia:Malaya/302/1954 H1N1)
NS1_I78A1Influenza A virus (strain A/Mallard/Alberta/827/1978 H8N4)
NS1_I76A5Influenza A virus (strain A/Mallard/Alberta/88/1976 H3N8)
NS1_I78A3Influenza A virus (strain A/Mallard/New York/6750/1978 H2N2)
NS1_I78A4Influenza A virus (strain A/Mallard/New York/6874/1978 H3N2)
NS1_I87A1Influenza A virus (strain A/Mallard/Ohio/556/1987 H5N9)
NS1_I71A1Influenza A virus (strain A/Memphis/1/1971 H3N2)
NS1_I72A4Influenza A virus (strain A/Memphis/101/1972 H3N2)
NS1_I72A3Influenza A virus (strain A/Memphis/102/1972 H3N2)
NS1_I76A6Influenza A virus (strain A/Memphis/110/1976 H3N2)
NS1_I78A8Influenza A virus (strain A/Memphis/18/1978 H3N2)
NS1_I78A7Influenza A virus (strain A/Memphis/2/1978 H3N2)
NS1_I80A4Influenza A virus (strain A/Memphis/4/1980 H3N2)
NS1_I00A1Influenza A virus (strain A/New Zealand:South Canterbury/35/2000 H1N1)
NS1_I79A1Influenza A virus (strain A/Pintail/Alberta/119/1979 H4N6)
NS1_I79A2Influenza A virus (strain A/Pintail/Alberta/121/1979 H7N8)
NS1_I78AAInfluenza A virus (strain A/Pintail/Alberta/268/1978 H6N2)
NS1_I79A3Influenza A virus (strain A/Pintail/Alberta/358/1979 H3N6)
NS1_I73A5Influenza A virus (strain A/Port Chalmers/1/1973 H3N2)
NS1_I70A0Influenza A virus (strain A/Qu/7/1970 H3N2)
NS1_I85A7Influenza A virus (strain A/Ruddy Turnstone/New Jersey/47/1985 H4N6)
NS1_I06A0Influenza A virus (strain A/Russia:St.Petersburg/8/2006 H1N1)
NS1_I80A2Influenza A virus (strain A/Seal/Massachusetts/1/1980 H7N7)
NS1_I82A3Influenza A virus (strain A/Seal/Massachusetts/133/1982 H4N5)
NS1_I72A5Influenza A virus (strain A/Shearwater/Australia/1972 H6N5)
NS1_I01A0Influenza A virus (strain A/Silky Chicken/Hong Kong/SF189/2001 H5N1 genotype A)
NS1_I02A4Influenza A virus (strain A/Silky Chicken/Hong Kong/YU100/2002 H5N1 genotype X3)
NS1_I57A5Influenza A virus (strain A/Singapore/1/1957 H2N2)
NS1_I77A4Influenza A virus (strain A/Swine/Colorado/1/1977 H3N2)
NS1_I30A0Influenza A virus (strain A/Swine/Iowa/15/1930 H1N1)
NS1_I61A1Influenza A virus (strain A/Swine/Wisconsin/1/1961 H1N1)
NS1_I72A6Influenza A virus (strain A/Tern/Turkmenia/18/1972 H3N3)
NS1_I67A0Influenza A virus (strain A/Tokyo/3/1967 H2N2)
NS1_I82A8Influenza A virus (strain A/Turkey/Bethlehem-Glilit/1492-B/1982 H1N1)
NS1_I63A1Influenza A virus (strain A/Turkey/Canada/1963 H6N8)
NS1_I83A4Influenza A virus (strain A/Turkey/Ireland/1378/1983 H5N8)
NS1_I78ACInfluenza A virus (strain A/Turkey/Minnesota/501/1978 H6N8)
NS1_I80A8Influenza A virus (strain A/Turkey/Minnesota/833/1980 H4N2)
NS1_I68A3Influenza A virus (strain A/Turkey/Ontario/6118/1968 H8N4)
NS1_I66A0Influenza A virus (strain A/Turkey/Ontario/7732/1966 H5N9)
NS1_I71A2Influenza A virus (strain A/Turkey/Oregon/1971 H7N3)
NS1_I66A1Influenza A virus (strain A/Turkey/Wisconsin/1/1966 H9N2)
NS1_I72A2Influenza A virus (strain A/Udorn/307/1972 H3N2)
NS1_I51A0Influenza A virus (strain A/USA:Albany/12/1951 H1N1)
NS1_I45A0Influenza A virus (strain A/USA:Huston/AA/1945 H1N1)
NS1_I43A0Influenza A virus (strain A/USA:Iowa/1943 H1N1)
NS1_I96A2Influenza A virus (strain A/USA:Memphis/10/1996 H1N1)
NS1_I35A3Influenza A virus (strain A/USA:Phila/1935 H1N1)
NS1_I07A0Influenza A virus (strain A/USA:Texas/UR06-0195/2007 H1N1)
NS1_I77ABInfluenza A virus (strain A/USSR/90/1977 H1N1)
NS1_I000WInfluenza A virus (strain A/Wa-182)
NS1_I84A2Influenza A virus (strain A/Whale/Maine/328/1984 H13N2)
NS1_I33A0Influenza A virus (strain A/Wilson-Smith/1933 H1N1) (Influenza A virus (strain ...
NS1_I000XInfluenza A virus (strain A/X-31 H3N2)