Clathrin-mediated endocytosis of virus by host

fusion lysis permeabilisation

Clathrin-mediated endoycytosis (CME) is triggered by the binding of the virion to host receptors. The virion attachment to the host receptor induces the binding of an adaptor protein to the receptor cytoplasmic tail. Adaptor proteins bind to clathrin, and the local concentration of adaptor proteins on the inside face of the plasma membrane allows clathrin to multimerize to form characteristic invaginations or Clathrin-Coated Pit (CCP). Membrane scission proteins DNM1/Dynamin-1 or DNM2/Dynamin-2 pinch off the CCP from the host membrane thereby releasing the Clathrin-Coated Vesicle (CCV).
The clathrin basket is subsequently released from the vesicle by auxilin and hsc70. The vesicle then delivers its viral content to early endosomes. Endosomal acidic pH and /or receptor binding usually induces structural modifications of the virus surface proteins that leads to genome penetration into the cytoplasm via fusion or permeabilization mechanisms.

Matching UniProtKB/Swiss-Prot entries

374 entries grouped by protein (browse by keywords)

All proteins are shown (view only 253 complete proteome entries)

Capsid protein VP1 (Coat protein VP1)

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CAPSD_AAV2SAdeno-associated virus 2 (isolate Srivastava/1982) (AAV-2) reference strain

Capsid protein VP1

CAPSD_AADNVAedes albopictus densovirus (isolate Boublik/1994) (AalDNV) reference strain

Capsid protein VP1/VP2 (Coat protein VP1/VP2)

CAPSD_ADVGAleutian mink disease parvovirus (strain G) (ADV) reference strain

Capsid protein VP1

CAPSD_PAVBPBovine parvovirus (isolate pAT153/1986) (BPV) reference strain
CAPSD_HASV1Human astrovirus-1 (HAstV-1) reference strain

Capsid polyprotein VP90

CAPSD_PAVHVHuman parvovirus B19 (strain HV) (HPV B19) reference strain

Capsid protein VP1

CAPSD_JDNVPJunonia coenia densovirus (isolate pBRJ/1990) (JcDNV) reference strain

Capsid protein VP1 (Coat protein VP1) (Structural protein VP1)

CAPSD_MUMIPMurine minute virus (strain MVM prototype) (MVM) (Murine minute virus (strain ... reference strain
CAPSD_AEDEVAedes densonucleosis virus (strain GKV 002 002) (Aedes densovirus)

Capsid protein VP1/VP2 (Coat protein VP1/VP2)

CAPSD_PAVCCanine parvovirus type 2 (CPV-2)

Capsid protein VP2 (Coat protein VP2)

CAPSD_PAVCBCanine parvovirus type 2 (isolate Dog/United States/CPV-b/1978) (CPV-2)
CAPSD_PAVCNCanine parvovirus type 2 (isolate Dog/United States/CPV-N/1978) (CPV-2)
CAPSD_PAVC7Canine parvovirus type 2 (strain Dog/United States/780929/-) (CPV-2)
CAPSD_PAVCDCanine parvovirustype 2 (isolate Dog/United States/CPV-d/1988) (CPV-2)
CAPSD_DSDNVDiatraea saccharalis densovirus (DsDNV)

Capsid protein VP1 (Coat protein VP1) (Structural protein VP1)

CAPSD_FPVFeline panleukopenia virus (FPV)
CAPSD_FPV19Feline panleukopenia virus (strain 193) (FPV)
CAPSD_GMDNVGalleria mellonella densovirus (GmDNV)

Capsid protein VP1 (Coat protein VP1) (Structural protein VP1)

CAPSD_PAVHHHamster parvovirus H1
CAPSD_HASV2Human astrovirus-2 (HAstV-2)

Capsid polyprotein VP90

CAPSD_HASV3Human astrovirus-3 (HAstV-3)

Capsid polyprotein VP90

CAPSD_HASV4Human astrovirus-4 (HAstV-4)

Capsid polyprotein VP90

CAPSD_HASV5Human astrovirus-5 (HAstV-5)

Capsid polyprotein VP90

CAPSD_HASV6Human astrovirus-6 (HAstV-6)

Capsid polyprotein VP90

CAPSD_HASV7Human astrovirus-7 (HAstV-7)

Capsid polyprotein VP90

CAPSD_HASV8Human astrovirus-8 (HAstV-8)

Capsid polyprotein VP90

CAPSD_PAVHUHuman parvovirus B19 (isolate AU) (HPV B19)
CAPSD_MASV1Mink astrovirus 1 (MAstV-1)

Capsid polyprotein VP90

CAPSD_MEVAMink enteritis virus (strain Abashiri) (MEV)
CAPSD_MUMIMMurine minute virus (strain MVMi) (MVM) (Murine parvovirus)
CAPSD_OASV1Ovine astrovirus 1 (OAstV-1)

Capsid polyprotein VP90

CAPSD_PASV1Porcine astrovirus 1 (PAstV-1)

Capsid polyprotein VP90

CAPSD_PAVP9Porcine parvovirus (strain 90HS) (PPV)
CAPSD_PAVPKPorcine parvovirus (strain Kresse) (PPV)
CAPSD_PAVPNPorcine parvovirus (strain NADL-2) (PPV)

Penton protein (CP-P) (Penton base protein) (Protein III)

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CAPSP_ADE12Human adenovirus A serotype 12 (HAdV-12) (Human adenovirus 12) reference strain
CAPSP_ADE02Human adenovirus C serotype 2 (HAdV-2) (Human adenovirus 2) reference strain
CAPSP_ADE05Human adenovirus C serotype 5 (HAdV-5) (Human adenovirus 5)

Envelope glycoprotein gp160 (Env polyprotein)

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ENV_HV1MAHuman immunodeficiency virus type 1 group M subtype A (isolate MAL) (HIV-1) reference strain
ENV_HV1B1Human immunodeficiency virus type 1 group M subtype B (isolate BH10) (HIV-1) reference strain
ENV_HV1BRHuman immunodeficiency virus type 1 group M subtype B (isolate BRU/LAI) (HIV-1) reference strain
ENV_HV1H2Human immunodeficiency virus type 1 group M subtype B (isolate HXB2) (HIV-1) reference strain
ENV_HV193Human immunodeficiency virus type 1 group M subtype F1 (isolate 93BR020) (HIV-1) reference strain
ENV_HV1VIHuman immunodeficiency virus type 1 group M subtype F1 (isolate VI850) (HIV-1) reference strain
ENV_HV1ANHuman immunodeficiency virus type 1 group O (isolate ANT70) (HIV-1) reference strain
ENV_HV1MVHuman immunodeficiency virus type 1 group O (isolate MVP5180) (HIV-1) reference strain
ENV_HV2BEHuman immunodeficiency virus type 2 subtype A (isolate BEN) (HIV-2) reference strain
ENV_HV1ZHHuman immunodeficiency virus type 1 group M subtype A (isolate Z321) (HIV-1)
ENV_HV1A2Human immunodeficiency virus type 1 group M subtype B (isolate ARV2/SF2) (HIV-1)
ENV_HV1B8Human immunodeficiency virus type 1 group M subtype B (isolate BH8) (HIV-1)
ENV_HV1BNHuman immunodeficiency virus type 1 group M subtype B (isolate BRVA) (HIV-1)
ENV_HV1C4Human immunodeficiency virus type 1 group M subtype B (isolate CDC-451) (HIV-1)
ENV_HV1H3Human immunodeficiency virus type 1 group M subtype B (isolate HXB3) (HIV-1)
ENV_HV1J3Human immunodeficiency virus type 1 group M subtype B (isolate JH32) (HIV-1)
ENV_HV1JRHuman immunodeficiency virus type 1 group M subtype B (isolate JRCSF) (HIV-1)
ENV_HV1KBHuman immunodeficiency virus type 1 group M subtype B (isolate KB-1/ETR) (HIV-1)
ENV_HV1LWHuman immunodeficiency virus type 1 group M subtype B (isolate LW123) (HIV-1)
ENV_HV1MFHuman immunodeficiency virus type 1 group M subtype B (isolate MFA) (HIV-1)
ENV_HV1MNHuman immunodeficiency virus type 1 group M subtype B (isolate MN) (HIV-1)
ENV_HV1N5Human immunodeficiency virus type 1 group M subtype B (isolate NY5) (HIV-1)

Truncated surface protein (SU) (Glycoprotein 120) (gp120)

ENV_HV1OYHuman immunodeficiency virus type 1 group M subtype B (isolate OYI) (HIV-1)
ENV_HV1RHHuman immunodeficiency virus type 1 group M subtype B (isolate RF/HAT3) (HIV-1)
ENV_HV1SCHuman immunodeficiency virus type 1 group M subtype B (isolate SC) (HIV-1)
ENV_HV1S1Human immunodeficiency virus type 1 group M subtype B (isolate SF162) (HIV-1)
ENV_HV1S3Human immunodeficiency virus type 1 group M subtype B (isolate SF33) (HIV-1)
ENV_HV1W1Human immunodeficiency virus type 1 group M subtype B (isolate WMJ1) (HIV-1)
ENV_HV1W2Human immunodeficiency virus type 1 group M subtype B (isolate WMJ22) (HIV-1)
ENV_HV1Y2Human immunodeficiency virus type 1 group M subtype B (isolate YU-2) (HIV-1)
ENV_HV1B9Human immunodeficiency virus type 1 group M subtype B (strain 89.6) (HIV-1)
ENV_HV192Human immunodeficiency virus type 1 group M subtype C (isolate 92BR025) (HIV-1)
ENV_HV1ETHuman immunodeficiency virus type 1 group M subtype C (isolate ETH2220) (HIV-1)
ENV_HV1ELHuman immunodeficiency virus type 1 group M subtype D (isolate ELI) (HIV-1)
ENV_HV1NDHuman immunodeficiency virus type 1 group M subtype D (isolate NDK) (HIV-1)
ENV_HV1Z2Human immunodeficiency virus type 1 group M subtype D (isolate Z2/CDC-Z34) ...
ENV_HV1Z6Human immunodeficiency virus type 1 group M subtype D (isolate Z6) (HIV-1)
ENV_HV1Z8Human immunodeficiency virus type 1 group M subtype D (isolate Z84) (HIV-1)
ENV_HV1MPHuman immunodeficiency virus type 1 group M subtype F2 (isolate MP255) (HIV-1)
ENV_HV1M2Human immunodeficiency virus type 1 group M subtype F2 (isolate MP257) (HIV-1)
ENV_HV19NHuman immunodeficiency virus type 1 group M subtype G (isolate 92NG083) (HIV-1)
ENV_HV190Human immunodeficiency virus type 1 group M subtype H (isolate 90CF056) (HIV-1)
ENV_HV1V9Human immunodeficiency virus type 1 group M subtype H (isolate VI991) (HIV-1)
ENV_HV1S9Human immunodeficiency virus type 1 group M subtype J (isolate SE9173) (HIV-1)
ENV_HV1S2Human immunodeficiency virus type 1 group M subtype J (isolate SE9280) (HIV-1)
ENV_HV196Human immunodeficiency virus type 1 group M subtype K (isolate 96CM-MP535) ...
ENV_HV197Human immunodeficiency virus type 1 group M subtype K (isolate 97ZR-EQTB11) ...
ENV_HV1Z3Human immunodeficiency virus type 1 group M subtype U (isolate Z3) (HIV-1)

Truncated surface protein (SU) (Glycoprotein 120) (gp120)

ENV_HV1YBHuman immunodeficiency virus type 1 group N (isolate YBF106) (HIV-1)
ENV_HV1YFHuman immunodeficiency virus type 1 group N (isolate YBF30) (HIV-1)
ENV_HV2CAHuman immunodeficiency virus type 2 subtype A (isolate CAM2) (HIV-2)
ENV_HV2D1Human immunodeficiency virus type 2 subtype A (isolate D194) (HIV-2)
ENV_HV2G1Human immunodeficiency virus type 2 subtype A (isolate Ghana-1) (HIV-2)
ENV_HV2KRHuman immunodeficiency virus type 2 subtype A (isolate KR) (HIV-2)
ENV_HV2NZHuman immunodeficiency virus type 2 subtype A (isolate NIH-Z) (HIV-2)
ENV_HV2ROHuman immunodeficiency virus type 2 subtype A (isolate ROD) (HIV-2)
ENV_HV2SBHuman immunodeficiency virus type 2 subtype A (isolate SBLISY) (HIV-2)
ENV_HV2STHuman immunodeficiency virus type 2 subtype A (isolate ST) (HIV-2)
ENV_HV2S2Human immunodeficiency virus type 2 subtype A (isolate ST/24.1C#2) (HIV-2)
ENV_HV2D2Human immunodeficiency virus type 2 subtype B (isolate D205) (HIV-2)
ENV_HV2EHHuman immunodeficiency virus type 2 subtype B (isolate EHO) (HIV-2)
ENV_HV2UCHuman immunodeficiency virus type 2 subtype B (isolate UC1) (HIV-2)

Pre-glycoprotein polyprotein GP complex

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GLYC_GTOVVGuanarito mammarenavirus (isolate Human/Venezuela/NH-95551/1990) (GTOV)
GLYC_JUNINJunin mammarenavirus (JUNV) (Junn mammarenavirus)
GLYC_MACHUMachupo virus (MACV)


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GLYCO_DMSVADrosophila melanogaster sigma virus (isolate Drosophila/USA/AP30/2005) (DMelSV) reference strain
GLYCO_TIBVCTibrogargan virus (strain CS132) (TIBV) reference strain
GLYCO_TUPVTTupaia virus (isolate Tupaia/Thailand/-/1986) (TUPV) reference strain
GLYCO_VSIVGVesicular stomatitis Indiana virus (strain Glasgow) (VSIV) reference strain
GLYCO_VSIVAVesicular stomatitis Indiana virus (strain San Juan) (VSIV) reference strain
GLYCO_SVCVSpring viremia of carp virus (Rhabdovirus carpia)
GLYCO_VSIVSVesicular stomatitis Indiana virus (strain 85CLB South America) (VSIV)
GLYCO_VSIVCVesicular stomatitis Indiana virus (strain 94GUB Central America) (VSIV)
GLYCO_VSIVNVesicular stomatitis Indiana virus (strain 98COE North America) (VSIV)
GLYCO_VSIVOVesicular stomatitis Indiana virus (strain Orsay) (VSIV)
GLYCO_VSNJOVesicular stomatitis New Jersey virus (strain Ogden subtype Concan) (VSNJV)

Glycoprotein G

GLYCP_NIPAVNipah virus

Envelopment polyprotein (M polyprotein)

GP_CCHFICrimean-Congo hemorrhagic fever virus (strain Nigeria/IbAr10200/1970) (CCHFV) reference strain

Glycoprotein 2b (Protein GP2b) (GP(S))

GP2B_EAVBUEquine arteritis virus (strain Bucyrus) (EAV) reference strain

Glycoprotein 3 (Protein GP3)

GP3_EAVBUEquine arteritis virus (strain Bucyrus) (EAV) reference strain

Glycoprotein 4 (Protein GP4)

GP4_EAVBUEquine arteritis virus (strain Bucyrus) (EAV) reference strain

Glycoprotein 5 (Protein GP5) (G(L))

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GP5_PRRSLPorcine reproductive and respiratory syndrome virus (strain Lelystad) (PRRSV) reference strain
GP5_PRRSSPorcine reproductive and respiratory syndrome virus (isolate Pig/United ...


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HEMA_I49A1Influenza A virus (strain A/Duck/Germany/1949 H10N7) reference strain
HEMA_I96A0Influenza A virus (strain A/Goose/Guangdong/1/1996 H5N1 genotype Gs/Gd) reference strain
HEMA_I34A1Influenza A virus (strain A/Puerto Rico/8/1934 H1N1) reference strain
HEMA_I80A2Influenza A virus (strain A/Seal/Massachusetts/1/1980 H7N7) reference strain
HEMA_I72A5Influenza A virus (strain A/Shearwater/Australia/1972 H6N5) reference strain
HEMA_I80A8Influenza A virus (strain A/Turkey/Minnesota/833/1980 H4N2) reference strain
HEMA_I68A0Influenza A virus (strain A/Aichi/2/1968 H3N2)
HEMA_I89A2Influenza A virus (strain A/Beijing/353/1989 H3N2)
HEMA_I75A0Influenza A virus (strain A/Beijing/39/1975 H3N2)
HEMA_I77AAInfluenza A virus (strain A/Brazil/11/1978 H1N1)
HEMA_I18A0Influenza A virus (strain A/Brevig Mission/1/1918 H1N1) (Influenza A virus ...
HEMA_I77AGInfluenza A virus (strain A/Budgerigar/Hokkaido/1/1977 H4N6)
HEMA_I75A4Influenza A virus (strain A/Chicken/Alabama/1/1975 H4N8)
HEMA_I49A0Influenza A virus (strain A/Chicken/Germany/n/1949 H10N7)
HEMA_I97A0Influenza A virus (strain A/Chicken/Hong Kong/220/1997 H5N1 genotype Gs/Gd)
HEMA_I83A5Influenza A virus (strain A/Chicken/Pennsylvania/1/1983 H5N2)
HEMA_I59A0Influenza A virus (strain A/Chicken/Scotland/1959 H5N1)
HEMA_I85A3Influenza A virus (strain A/Chicken/Victoria/1/1985 H7N7)
HEMA_I000FInfluenza A virus (strain A/Chicken/Weybridge H7N7) (Influenza A virus (strain ...
HEMA_I83A1Influenza A virus (strain A/Chile/1/1983 H1N1)
HEMA_I96A3Influenza A virus (strain A/China:Nanchang/11/1996 H1N1)
HEMA_I76A1Influenza A virus (strain A/Duck/Alberta/28/1976 H4N6)
HEMA_I76A4Influenza A virus (strain A/Duck/Alberta/35/1976 H1N1)
HEMA_I76A2Influenza A virus (strain A/Duck/Alberta/60/1976 H12N5)
HEMA_I76A3Influenza A virus (strain A/Duck/Alberta/78/1976 H3N8)
HEMA_I80A1Influenza A virus (strain A/Duck/Australia/749/1980 H1N1)
HEMA_I56A1Influenza A virus (strain A/Duck/Czechoslovakia/1956 H4N6)
HEMA_I56A2Influenza A virus (strain A/Duck/England/1/1956 H11N6)
HEMA_I80A6Influenza A virus (strain A/Duck/Hokkaido/8/1980 H3N8)
HEMA_I00A0Influenza A virus (strain A/Duck/Hong Kong/2986.1/2000 H5N1 genotype C)
HEMA_I83A3Influenza A virus (strain A/Duck/Ireland/113/1983 H5N8)
HEMA_I74A2Influenza A virus (strain A/Duck/Memphis/928/1974 H3N8)
HEMA_I76AKInfluenza A virus (strain A/Duck/New Zealand/31/1976 H4N6)
HEMA_I63A3Influenza A virus (strain A/Duck/Ukraine/1/1963 H3N8)
HEMA_I77A8Influenza A virus (strain A/England/321/1977 H3N2)
HEMA_I72A0Influenza A virus (strain A/Equine/Algiers/1972 H3N8)
HEMA_I64A5Influenza A virus (strain A/Equine/C.Detroit/1/1964 H7N7)
HEMA_I63A0Influenza A virus (strain A/Equine/Cambridge/1/1963 H7N7)
HEMA_I73A1Influenza A virus (strain A/Equine/Cambridge/1/1973 H7N7)
HEMA_I64A6Influenza A virus (strain A/Equine/Detroit/1/1964 H7N7)
HEMA_I76A8Influenza A virus (strain A/Equine/Fontainebleau/1976 H3N8) (Influenza A virus ...
HEMA_I89A7Influenza A virus (strain A/Equine/Jillin/1/1989 H3N8)
HEMA_I81A2Influenza A virus (strain A/Equine/Kentucky/1/1981)
HEMA_I87A3Influenza A virus (strain A/Equine/Kentucky/1/1987 H3N8)
HEMA_I86A2Influenza A virus (strain A/Equine/Kentucky/2/1986 H3N8)
HEMA_I66A2Influenza A virus (strain A/Equine/Lexington/1/1966 H7N7)
HEMA_I73A4Influenza A virus (strain A/Equine/London/1416/1973 H7N7)
HEMA_I63A2Influenza A virus (strain A/Equine/Miami/1/1963 H3N8)
HEMA_I77A9Influenza A virus (strain A/Equine/New Market/1/1977 H7N7)
HEMA_I76AJInfluenza A virus (strain A/Equine/New Market/1976 H3N8)
HEMA_I56A3Influenza A virus (strain A/Equine/Prague/1/1956 H7N7)
HEMA_I80ABInfluenza A virus (strain A/Equine/Romania/1980 H3N8)
HEMA_I85A5Influenza A virus (strain A/Equine/Santiago/1/1985 H3N8)
HEMA_I76ALInfluenza A virus (strain A/Equine/Sao Paulo/1/1976 H7N7)
HEMA_I89A8Influenza A virus (strain A/Equine/Suffolk/1989 H3N8)
HEMA_I72A7Influenza A virus (strain A/Equine/Switzerland/137/1972 H7N7)
HEMA_I86A3Influenza A virus (strain A/Equine/Tennessee/5/1986 H3N8)
HEMA_I71A3Influenza A virus (strain A/Equine/Tokyo/1971 H3N2)
HEMA_I63A4Influenza A virus (strain A/Equine/Uruguay/1/1963 H3N8)
HEMA_I34A0Influenza A virus (strain A/Fowl plague virus/Rostock/8/1934 H7N1)
HEMA_I79A7Influenza A virus (strain A/Grey teal/Australia/2/1979 H4N4)
HEMA_I84A4Influenza A virus (strain A/Gull/Astrakhan/227/1984 H13N6)
HEMA_I77AFInfluenza A virus (strain A/Gull/Maryland/704/1977 H13N6)
HEMA_I80ADInfluenza A virus (strain A/Gull/Minnesota/945/1980 H13N6)
HEMA_I36A0Influenza A virus (strain A/Henry/1936 H1N1)
HEMA_I88A4Influenza A virus (strain A/Herring gull/DE/677/1988 H2N8)
HEMA_I40A0Influenza A virus (strain A/Hickox/1940 H1N1)
HEMA_I68A4Influenza A virus (strain A/Hong Kong/1/1968 H3N2)
HEMA_I97A1Influenza A virus (strain A/Hong Kong/156/1997 H5N1 genotype Gs/Gd)
HEMA_I83A8Influenza A virus (strain A/Hong Kong/5/1983 H3N2)
HEMA_I80AAInfluenza A virus (strain A/India/6263/1980 H1N1)
HEMA_I57A0Influenza A virus (strain A/Japan/305/1957 H2N2)
HEMA_I79A4Influenza A virus (strain A/Kiev/59/1979 H1N1)
HEMA_I68A5Influenza A virus (strain A/Korea/426/1968 H2N2)
HEMA_I54A0Influenza A virus (strain A/Leningrad/1/1954 H1N1)
HEMA_I54A2Influenza A virus (strain A/Malaysia:Malaya/302/1954 H1N1)
HEMA_I82A1Influenza A virus (strain A/Mallard/Astrakhan/263/1982 H14N5) (Influenza A ...
HEMA_I78A3Influenza A virus (strain A/Mallard/New York/6750/1978 H2N2)
HEMA_I78A4Influenza A virus (strain A/Mallard/New York/6874/1978 H3N2)
HEMA_I87A1Influenza A virus (strain A/Mallard/Ohio/556/1987 H5N9)
HEMA_I71A1Influenza A virus (strain A/Memphis/1/1971 H3N2)
HEMA_I72A4Influenza A virus (strain A/Memphis/101/1972 H3N2)
HEMA_I72A3Influenza A virus (strain A/Memphis/102/1972 H3N2)
HEMA_I76A6Influenza A virus (strain A/Memphis/110/1976 H3N2)
HEMA_I78A8Influenza A virus (strain A/Memphis/18/1978 H3N2)
HEMA_I78A7Influenza A virus (strain A/Memphis/2/1978 H3N2)
HEMA_I80A4Influenza A virus (strain A/Memphis/4/1980 H3N2)
HEMA_I84A3Influenza A virus (strain A/Mink/Sweden/1984 H10N4)
HEMA_I00A1Influenza A virus (strain A/New Zealand:South Canterbury/35/2000 H1N1)
HEMA_I68A6Influenza A virus (strain A/Northern Territory/60/1968 H3N2) (Influenza A virus ...
HEMA_I73A5Influenza A virus (strain A/Port Chalmers/1/1973 H3N2)
HEMA_I85A7Influenza A virus (strain A/Ruddy Turnstone/New Jersey/47/1985 H4N6)
HEMA_I06A0Influenza A virus (strain A/Russia:St.Petersburg/8/2006 H1N1)
HEMA_I82A3Influenza A virus (strain A/Seal/Massachusetts/133/1982 H4N5)
HEMA_I57A5Influenza A virus (strain A/Singapore/1/1957 H2N2)
HEMA_I85A6Influenza A virus (strain A/Starling/Victoria/5156/1985 H7N7)
HEMA_I77A4Influenza A virus (strain A/Swine/Colorado/1/1977 H3N2)
HEMA_I88A6Influenza A virus (strain A/Swine/Indiana/1726/1988 H1N1)
HEMA_I30A0Influenza A virus (strain A/Swine/Iowa/15/1930 H1N1)
HEMA_I85A4Influenza A virus (strain A/Swine/Netherlands/12/1985 H1N1)
HEMA_I76AIInfluenza A virus (strain A/Swine/New Jersey/11/1976 H1N1)
HEMA_I84A5Influenza A virus (strain A/Swine/Ukkel/1/1984 H3N2)
HEMA_I61A1Influenza A virus (strain A/Swine/Wisconsin/1/1961 H1N1)
HEMA_I67A2Influenza A virus (strain A/Swine/Wisconsin/1/1967 H1N1)
HEMA_I61A0Influenza A virus (strain A/Tern/South Africa/1961 H5N3)
HEMA_I83A4Influenza A virus (strain A/Turkey/Ireland/1378/1983 H5N8)
HEMA_I81A3Influenza A virus (strain A/Turkey/Minnesota/1661/1981 H1N1)
HEMA_I68A3Influenza A virus (strain A/Turkey/Ontario/6118/1968 H8N4)
HEMA_I66A0Influenza A virus (strain A/Turkey/Ontario/7732/1966 H5N9)
HEMA_I71A2Influenza A virus (strain A/Turkey/Oregon/1971 H7N3)
HEMA_I66A1Influenza A virus (strain A/Turkey/Wisconsin/1/1966 H9N2)
HEMA_I72A2Influenza A virus (strain A/Udorn/307/1972 H3N2)
HEMA_I51A0Influenza A virus (strain A/USA:Albany/12/1951 H1N1)
HEMA_I45A0Influenza A virus (strain A/USA:Huston/AA/1945 H1N1)
HEMA_I43A0Influenza A virus (strain A/USA:Iowa/1943 H1N1)
HEMA_I96A2Influenza A virus (strain A/USA:Memphis/10/1996 H1N1)
HEMA_I35A3Influenza A virus (strain A/USA:Phila/1935 H1N1)
HEMA_I07A0Influenza A virus (strain A/USA:Texas/UR06-0195/2007 H1N1)
HEMA_I77ABInfluenza A virus (strain A/USSR/90/1977 H1N1)
HEMA_I75A3Influenza A virus (strain A/Victoria/3/1975 H3N2)
HEMA_I84A2Influenza A virus (strain A/Whale/Maine/328/1984 H13N2)
HEMA_I33A0Influenza A virus (strain A/Wilson-Smith/1933 H1N1) (Influenza A virus (strain ...
HEMA_I000XInfluenza A virus (strain A/X-31 H3N2)

Genome polyprotein

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POLG_BVDVNBovine viral diarrhea virus (isolate NADL) (BVDV) (Mucosal disease virus) reference strain
POLG_DEN1WDengue virus type 1 (strain Nauru/West Pac/1974) (DENV-1) reference strain
POLG_HCVHHepatitis C virus genotype 1a (isolate H) (HCV) reference strain
POLG_YEFV1Yellow fever virus (strain 17D vaccine) (YFV) reference strain
POLG_ZIKVZika virus (strain Mr 766) (ZIKV) reference strain
POLG_BVDVCBovine viral diarrhea virus (strain CP7) (BVDV) (Mucosal disease virus)
POLG_BVDVSBovine viral diarrhea virus (strain SD-1) (BVDV) (Mucosal disease virus)
POLG_DEN1BDengue virus type 1 (strain Brazil/97-11/1997) (DENV-1)
POLG_DEN1SDengue virus type 1 (strain Singapore/S275/1990) (DENV-1)
POLG_DEN28Dengue virus type 2 (isolate Thailand/0168/1979) (DENV-2)
POLG_DEN27Dengue virus type 2 (strain 16681-PDK53) (DENV-2)
POLG_DEN2JDengue virus type 2 (strain Jamaica/1409/1983) (DENV-2)
POLG_DEN2QDengue virus type 2 (strain Peru/IQT2913/1996) (DENV-2)
POLG_DEN2PDengue virus type 2 (strain Puerto Rico/PR159-S1/1969) (DENV-2)
POLG_DEN26Dengue virus type 2 (strain Thailand/16681/1984) (DENV-2)
POLG_DEN2NDengue virus type 2 (strain Thailand/NGS-C/1944) (DENV-2)
POLG_DEN3CDengue virus type 3 (strain China/80-2/1980) (DENV-3)
POLG_DEN3MDengue virus type 3 (strain Martinique/1243/1999) (DENV-3)
POLG_DEN3PDengue virus type 3 (strain Philippines/H87/1956) (DENV-3)
POLG_DEN3IDengue virus type 3 (strain Singapore/8120/1995) (DENV-3)
POLG_DEN3SDengue virus type 3 (strain Sri Lanka/1266/2000) (DENV-3)
POLG_DEN4DDengue virus type 4 (strain Dominica/814669/1981) (DENV-4)
POLG_DEN4PDengue virus type 4 (strain Philippines/H241/1956) (DENV-4)
POLG_DEN4SDengue virus type 4 (strain Singapore/8976/1995) (DENV-4)
POLG_DEN4TDengue virus type 4 (strain Thailand/0348/1991) (DENV-4)
POLG_DEN4HDengue virus type 4 (strain Thailand/0476/1997) (DENV-4)
POLG_FMDVZFoot-and-mouth disease virus (isolate -/Azerbaijan/A22-550/1965 serotype A) ...
POLG_FMDVIFoot-and-mouth disease virus (isolate -/Brazil/C3Indaial/1971 serotype C) (FMDV)
POLG_FMDV5Foot-and-mouth disease virus (isolate -/Germany/A5Westerwald/1951 serotype A) ...
POLG_FMDVTFoot-and-mouth disease virus (isolate -/Germany/C1Oberbayen/1960 serotype C) ...
POLG_FMDVSFoot-and-mouth disease virus (isolate -/Spain/S8c1SantaPau/1970 serotype C) ...
POLG_FMDVCFoot-and-mouth disease virus (isolate Bovine/Brazil/A24Cruzeiro/1955 serotype ...
POLG_FMDVOFoot-and-mouth disease virus (isolate Bovine/Germany/O1Kaufbeuren/1966 serotype ...
POLG_FMDVAFoot-and-mouth disease virus (isolate Bovine/United Kingdom/A12Valle119/1932 ...
POLG_FMDV1Foot-and-mouth disease virus (strain A10-61) (Aphthovirus A) (FMDV)
POLG_HCV1Hepatitis C virus genotype 1a (isolate 1) (HCV)
POLG_HCVBKHepatitis C virus genotype 1b (isolate BK) (HCV)
POLG_HCVCOHepatitis C virus genotype 1b (isolate Con1) (HCV)
POLG_HCVJ1Hepatitis C virus genotype 1b (isolate HC-J1) (HCV)
POLG_HCVJTHepatitis C virus genotype 1b (isolate HC-JT) (HCV)
POLG_HCVR6Hepatitis C virus genotype 1b (isolate HCR6) (HCV)
POLG_HCVJAHepatitis C virus genotype 1b (isolate Japanese) (HCV)
POLG_HCVTWHepatitis C virus genotype 1b (isolate Taiwan) (HCV)
POLG_HCVJ4Hepatitis C virus genotype 1b (strain HC-J4) (HCV)
POLG_HCVH9Hepatitis C virus genotype 1c (isolate HC-G9) (HCV)
POLG_HCVINHepatitis C virus genotype 1c (isolate India) (HCV)
POLG_HCVJ6Hepatitis C virus genotype 2a (isolate HC-J6) (HCV)
POLG_HCVJFHepatitis C virus genotype 2a (isolate JFH-1) (HCV)
POLG_HCVJ8Hepatitis C virus genotype 2b (isolate HC-J8) (HCV)
POLG_HCVJPHepatitis C virus genotype 2b (isolate JPUT971017) (HCV)
POLG_HCVBBHepatitis C virus genotype 2c (isolate BEBE1) (HCV)
POLG_HCVVAHepatitis C virus genotype 2k (isolate VAT96) (HCV)
POLG_HCVK3Hepatitis C virus genotype 3a (isolate k3a) (HCV)
POLG_HCVNZHepatitis C virus genotype 3a (isolate NZL1) (HCV)
POLG_HCVTRHepatitis C virus genotype 3b (isolate Tr-Kj) (HCV)
POLG_HCVJKHepatitis C virus genotype 3k (isolate JK049) (HCV)
POLG_HCVEDHepatitis C virus genotype 4a (isolate ED43) (HCV)
POLG_HCVEVHepatitis C virus genotype 5a (isolate EUH1480) (HCV)
POLG_HCVSAHepatitis C virus genotype 5a (isolate SA13) (HCV)
POLG_HCV6AHepatitis C virus genotype 6a (isolate 6a33) (HCV)
POLG_HCVEUHepatitis C virus genotype 6a (isolate EUHK2) (HCV)
POLG_HCVT5Hepatitis C virus genotype 6b (isolate Th580) (HCV)
POLG_HCVVNHepatitis C virus genotype 6d (isolate VN235) (HCV)
POLG_HCVJLHepatitis C virus genotype 6g (isolate JK046) (HCV)
POLG_HCVVPHepatitis C virus genotype 6h (isolate VN004) (HCV)
POLG_HCVVOHepatitis C virus genotype 6k (isolate VN405) (HCV)
POLG_HE71MHuman enterovirus 71 (strain 7423/MS/87) (Ev 71)
POLG_HE71BHuman enterovirus 71 (strain BrCr) (Ev 71)
POLG_HPE1HHuman parechovirus 1 (strain Harris) (HPeV-1) (Echovirus 22)
POLG_JAEVJJapanese encephalitis virus (strain Jaoars982)
POLG_JAEV5Japanese encephalitis virus (strain SA(v))
POLG_JAEV1Japanese encephalitis virus (strain SA-14)
POLG_KUNJMKunjin virus (strain MRM61C)
POLG_LANVTLangat virus (strain TP21)
POLG_LIVLouping ill virus (Li)
POLG_MVEV5Murray valley encephalitis virus (strain MVE-1-51) (MVEV)
POLG_TBEVHTick-borne encephalitis virus (strain Hypr) (TBEV)
POLG_TBEVWTick-borne encephalitis virus European subtype (strain Neudoerfl) (NEUV) ...
POLG_TBEVSTick-borne encephalitis virus Far Eastern subtype (strain Sofjin) (SOFV) ...
POLG_POWVLTick-borne powassan virus (strain LB) (POWV) (Powassan virus)
POLG_WNVWest Nile virus (WNV)
POLG_YEFVNYellow fever virus (isolate Angola/14FA/1971) (YFV)
POLG_YEFVEYellow fever virus (isolate Ethiopia/Couma/1961) (YFV)
POLG_YEFVCYellow fever virus (isolate Ivory Coast/1999) (YFV)
POLG_YEFVIYellow fever virus (isolate Ivory Coast/85-82H/1982) (YFV)
POLG_YEFVUYellow fever virus (isolate Uganda/A7094A4/1948) (YFV)
POLG_YEFVFYellow fever virus (strain French neurotropic vaccine FNV) (YFV)
POLG_YEFVAYellow fever virus (strain Ghana/Asibi/1927) (YFV)
POLG_YEFVTYellow fever virus (strain Trinidad/TRINID79A/1979) (YFV)

Structural polyprotein (p110)

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POLS_RUBVTRubella virus (strain Therien) (RUBV) reference strain
POLS_SFVSemliki forest virus (SFV) reference strain

Structural polyprotein (p130)

POLS_SINDVSindbis virus (SINV) reference strain

Structural polyprotein (p130)

POLS_RUBVBRubella virus (strain BRD1) (RUBV)
POLS_RUBVCRubella virus (strain BRDII) (RUBV)
POLS_RUBVDRubella virus (strain Cendehill) (RUBV)
POLS_RUBVMRubella virus (strain M33) (RUBV)
POLS_RUBVRRubella virus (strain RA27/3 vaccine) (RUBV)
POLS_RUBVNRubella virus (strain RN-UK86) (RUBV)
POLS_RUBVORubella virus (strain TO-336 vaccine) (RUBV)
POLS_RUBVVRubella virus (strain TO-336) (RUBV)
POLS_EEVV3Venezuelan equine encephalitis virus (strain 3880) (VEEV)

Structural polyprotein (p130)

POLS_EEVVEVenezuelan equine encephalitis virus (strain Everglades Fe3-7c) (VEEV)

Structural polyprotein (p130)

POLS_EEVVMVenezuelan equine encephalitis virus (strain Mena II) (VEEV)

Structural polyprotein (p130)

POLS_EEVVPVenezuelan equine encephalitis virus (strain P676) (VEEV)

Structural polyprotein (p130)

POLS_EEVV8Venezuelan equine encephalitis virus (strain TC-83) (VEEV)

Structural polyprotein (p130)

POLS_EEVVTVenezuelan equine encephalitis virus (strain Trinidad donkey) (VEEV)

Structural polyprotein (p130)

Frameshifted structural polyprotein (p130)

POLSF_SFVSemliki forest virus (SFV)

Envelope glycoprotein p57 (gp84) (gp94)

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VGLG_BDVVBorna disease virus (strain V) (BDV) reference strain
VGLG_BDVBorna disease virus (BDV)

Envelope glycoprotein (GP1,2) (GP)

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VGP_EBOZMZaire ebolavirus (strain Mayinga-76) (ZEBOV) (Zaire Ebola virus) reference strain
VGP_EBOREReston ebolavirus (strain Philippines-96) (REBOV) (Reston Ebola virus)
VGP_EBORRReston ebolavirus (strain Reston-89) (REBOV) (Reston Ebola virus)
VGP_EBORSReston ebolavirus (strain Siena/Philippine-92) (REBOV) (Reston Ebola virus)
VGP_EBOSBSudan ebolavirus (strain Boniface-76) (SEBOV) (Sudan Ebola virus)
VGP_EBOSMSudan ebolavirus (strain Maleo-79) (SEBOV) (Sudan Ebola virus)
VGP_EBOSUSudan ebolavirus (strain Uganda-00) (SEBOV) (Sudan Ebola virus)
VGP_TAFVCTai Forest ebolavirus (strain Cote d'Ivoire-94) (TAFV) (Cote d'Ivoire Ebola ...
VGP_EBOECZaire ebolavirus (strain Eckron-76) (ZEBOV) (Zaire Ebola virus)
VGP_EBOG4Zaire ebolavirus (strain Gabon-94) (ZEBOV) (Zaire Ebola virus)
VGP_EBOZ5Zaire ebolavirus (strain Kikwit-95) (ZEBOV) (Zaire Ebola virus)

Major capsid protein VP1 (Major structural protein VP1)

VP1_POVJCJC polyomavirus (JCPyV) (JCV) reference strain

Outer capsid protein VP2

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VP2_BTV10Bluetongue virus 10 (isolate USA) (BTV 10) reference strain
VP2_BTV1ABluetongue virus 1 (isolate Australia) (BTV 1)
VP2_BTV1VBluetongue virus 1 (isolate South Africa vaccine) (BTV 1)
VP2_BTV1SBluetongue virus 1 (isolate South Africa) (BTV 1)
VP2_BTV11Bluetongue virus 11 (isolate USA) (BTV 11)
VP2_BTV13Bluetongue virus 13 (isolate USA) (BTV 13)
VP2_BTV17Bluetongue virus 17 (isolate USA) (BTV 17)
VP2_BTV3VBluetongue virus 3 (isolate South Africa vaccine) (BTV 3)