Oryzavirus

Molecular biology

VIRION

Non enveloped, icosahedral virion with a double capsid structure, about 70 nm in diameter. Pentameric turrets (VP2) sit on the outside of the innermost capsid (VP3). Each turret is surrounded by five peripheral trimers (VP9) and each trimer binds to three clamp proteins (VP4B). The outer incomplete capsid has an icosahedral T=13 symmetry, the inner capsid an icosahedral symmetry T=2.

GENOME

Segmented dsRNA linear genome. Contains 10 segments coding for 12 proteins. Segments size range from 1162 to 3849 bp. Genome total size is about 26 kb (RRSV).

GENE EXPRESSION

The dsRNA genome is never completely uncoated, to prevent activation of antiviral state by the cell in response of dsRNA. The viral polymerase synthesizes a capped mRNA from each dsRNA segment. This capped mRNA is translocated to the cell cytoplasm where it is translated.

REPLICATION

CYTOPLASMIC

  1. Virus penetrates into the cytoplasm.
  2. Transcription of the dsRNA genome by viral polymerase occurs inside the virion, so that dsRNA is never exposed to the cytoplasm. This plus-strand transcript is used as template for translation.
  3. (+)RNAs are encapsidated in virion particle, inside which they are transcribed to give RNA (-) molecules with which they become base-paired to produce dsRNA genomes.
  4. Mature virions are released presumably following cell death and associated breakdown of host plasma membrane.

Matching UniProtKB/Swiss-Prot entries

11 entries grouped by strain

11 entries

Rice ragged stunt virus (isolate Thailand) (RRSV) reference strain

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CAPSD_RRSVTMajor inner capsid protein VP3 (Major core capsid protein VP3)
MVP_RRSVTMovement and RNA silencing protein VP6
RDRP_RRSVTRNA-directed RNA polymerase (EC 2.7.7.48)
VP10_RRSVTNon-structural protein VP10
VP1_RRSVTStructural protein VP1
VP2_RRSVTOuter capsid protein VP2
VP4B_RRSVTUncharacterized protein VP4b
VP5_RRSVTPutative minor structural protein VP5
VP7_RRSVTMicrotubule-associated protein VP7
VP8_RRSVTStructural protein precursor VP8
VP9_RRSVTStructural protein VP9