Crinivirus (taxid:67753)

VIRION

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Non-enveloped, bipartite filamentous particles about 650-850 nm and 700-900 nm in length, and 10-13 nm in diameter. The virion body is assembled by the major capsid protein (CP) and the tail by the minor capsid protein (CPm).

GENOME

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Bipartite linear ssRNA(+) genome of 15.3 to 17.6 kb. 3' terminus has no poly(A) tract and the 5' terminus probably has a methylated nucleotide cap.

GENE EXPRESSION

The virion RNA is infectious and serves as both the genome and viral messenger RNA. ORF1a and ORF1ab protein (containing RdRp) are produced by ribosomal frameshifting. Other ORFs are translated from a set of nested 3' co-terminal subgenomic RNAs.

ENZYMES

REPLICATION

CYTOPLASMIC

  1. Virus penetrates into the host cell.
  2. Uncoating, and release of the viral genomic RNA into the cytoplasm.
  3. The viral RNA is translated into a processed ORF1 polyprotein to yield the replication proteins.
  4. Replication occurs in viral factories. A dsRNA genome is synthesized from the genomic ssRNA(+).
  5. The dsRNA genome is transcribed/replicated thereby providing viral mRNAs/new ssRNA(+) genomes.
  6. Subgenomic RNA translation gives rise to the other viral proteins.
  7. Assembly of new virus particles.
  8. Viral movement proteins mediate virion cell-to-cell transfer.

Host-virus interaction

Suppression of RNA silencing

Sweet potato chlorotic stunt virus and Tomato chlorosis virus p22 proteins also function as suppressors of RNA silencing

Matching UniProtKB/Swiss-Prot entries

(all links/actions below point to uniprot.org website)

9 entries grouped by protein

1 entry

Capsid protein (CP) (Coat protein)

CAPSD_LIYV9
Lettuce infectious yellows virus (isolate United States/92) (LIYV) reference strain

1 entry

Minor capsid protein (CPm)

CPM_LIYV9
Lettuce infectious yellows virus (isolate United States/92) (LIYV) reference strain

1 entry

Movement protein Hsp70h (Heat shock protein 70 homolog) (Hsp70h)

MVP_LIYV9
Lettuce infectious yellows virus (isolate United States/92) (LIYV) reference strain

1 entry

Protein p26

P26_LIYV9
Lettuce infectious yellows virus (isolate United States/92) (LIYV) reference strain

1 entry

RNA-binding P34 protein (P34)

P34_LIYV9
Lettuce infectious yellows virus (isolate United States/92) (LIYV) reference strain

1 entry

Protein p59

P59_LIYV9
Lettuce infectious yellows virus (isolate United States/92) (LIYV) reference strain

1 entry

Protein P9

P9_LIYV9
Lettuce infectious yellows virus (isolate United States/92) (LIYV) reference strain

1 entry

Replicase polyprotein 1a

R1A_LIYV9
Lettuce infectious yellows virus (isolate United States/92) (LIYV) reference strain

1 entry

Replicase polyprotein 1ab

R1AB_LIYV9
Lettuce infectious yellows virus (isolate United States/92) (LIYV) reference strain
These structures were created with the help of Colabfold by Jason Nomburg, Nathan Price and Jennifer Doudna (ModelArchive).

Bean yellow disorder virus taxid:267970

Protein ModelArchive
CP ma-jd-viral-15942
CPm ma-jd-viral-44110
ORF1b ma-jd-viral-19500
p26 ma-jd-viral-39769
p27 ma-jd-viral-03372
p6 ma-jd-viral-30245
p6 ma-jd-viral-55769
p6.3 ma-jd-viral-50217
p60 ma-jd-viral-60824
p62 ma-jd-viral-09809
p9 ma-jd-viral-13887

Beet pseudoyellows virus taxid:72750

Protein ModelArchive
CP ma-jd-viral-15944
CPm ma-jd-viral-44106
HSP70h ma-jd-viral-09801
ORF 2 ma-jd-viral-45134
p10 ma-jd-viral-13885
p26 ma-jd-viral-03376
p59 ma-jd-viral-60820
p6 ma-jd-viral-55324
p9 ma-jd-viral-60862

Cucurbit chlorotic yellows virus taxid:558690

Protein ModelArchive
59-kDa protein (60 kDa protein) (p59) ma-jd-viral-60823
6 kDa protein (Hypothetical 6-kDa protein) (p6) ma-jd-viral-50216
6 kDa protein (Hypothetical p6 protein) ma-jd-viral-40223
9-kDa protein (p9) ma-jd-viral-13890
CP (Capsid protein) (Coat protein) ma-jd-viral-15947
Heat shock 70 kDa-like protein (Heat shock 70-kDa protein) (Heat shock 70-kDa protein-like protein) (Heat shock protein 70-like... ma-jd-viral-09795
Hypothetical 26-kDa protein ma-jd-viral-03375
Minor coat protein ma-jd-viral-44114
p22 protein ma-jd-viral-52042

Cucurbit yellow stunting disorder virus taxid:51330

Protein ModelArchive
CP (Coat protein) ma-jd-viral-15949
CPm ma-jd-viral-44113
Hsp70h ma-jd-viral-09815
p22 ma-jd-viral-42337
p25 ma-jd-viral-33839
p26 ma-jd-viral-03377
p59 ma-jd-viral-60831
p6 ma-jd-viral-50218
p9 ma-jd-viral-13888

Lettuce chlorosis virus taxid:642478

Protein ModelArchive
CP (Coat protein) ma-jd-viral-15941
Coat protein minor ma-jd-viral-44109
Heat shock 70k-Da protein (p62) ma-jd-viral-09797
p23 ma-jd-viral-39768
p27 ma-jd-viral-03379
p5 (p5.6) ma-jd-viral-29502
p6 (p4) ma-jd-viral-30400
p6.4 (p6.5) ma-jd-viral-50215
p60 ma-jd-viral-60822
p8 ma-jd-viral-43578
p9 ma-jd-viral-13886

Lettuce infectious yellows virus (isolate United States/92) taxid:651355

Protein ModelArchive
Capsid protein (CP) (Coat protein) ma-jd-viral-15962
Minor capsid protein (CPm) ma-jd-viral-42480
Movement protein Hsp70h (Heat shock protein 70 homolog) (Hsp70h) ma-jd-viral-09829
Protein p26 ma-jd-viral-32630
Protein p59 ma-jd-viral-60828

Potato yellow vein virus taxid:103881

Protein ModelArchive
Coat protein ma-jd-viral-15946
Coat protein minor ma-jd-viral-44115
Heat shock protein homologue ma-jd-viral-09798
P60 ma-jd-viral-60821
Putative hydrophobic membrane protein ma-jd-viral-41515
p10 ma-jd-viral-13883
p26 ma-jd-viral-03370
p7 ma-jd-viral-64765

Strawberry pallidosis-associated virus taxid:227507

Protein ModelArchive
Coat protein ma-jd-viral-15948
Heat shock protein 70-like protein ma-jd-viral-09817
Minor coat protein ma-jd-viral-44108
Movement protein (p8) ma-jd-viral-35998
ORF 2 (p9) ma-jd-viral-30755
p10 (p9) ma-jd-viral-13884
p28 ma-jd-viral-03373
p6 ma-jd-viral-55327
p60 ma-jd-viral-60829

Tomato chlorosis virus taxid:67754

Protein ModelArchive
Coat protein ma-jd-viral-15945
Heat shock protein 70 ma-jd-viral-09805
Minor coat protein ma-jd-viral-44107
ORF1b ma-jd-viral-19509
ORF5 (P9) ma-jd-viral-13891
ORF9 (P7) ma-jd-viral-33016
P5 (p6) ma-jd-viral-56748
P8 ma-jd-viral-55326
RNA dependent RNA polymerase ma-jd-viral-19509
RNA dependent RNA polymerase ma-jd-viral-19509
RNA-dependent RNA polymerase ma-jd-viral-19509
RNA-dependent RNA polymerase ma-jd-viral-19509
RNA-dependent RNA polymerase ma-jd-viral-19509
RNA-dependent RNA polymerase ma-jd-viral-19509
RNA-dependent RNA polymerase ma-jd-viral-19509
RNA-dependent RNA polymerase ma-jd-viral-19509
RNA-dependent RNA polymerase ma-jd-viral-19509
RNA-dependent RNA polymerase ma-jd-viral-19509
RNA-dependent RNA polymerase ma-jd-viral-19509
RNA-dependent RNA polymerase ma-jd-viral-19509
RNA-dependent RNA polymerase ma-jd-viral-19509
RNA-dependent RNA polymerase ma-jd-viral-19509
RNA-dependent RNA polymerase ma-jd-viral-19509
p22 ma-jd-viral-66168
p27 ma-jd-viral-03374
p59 ma-jd-viral-60826