Inoviridae

Molecular biology

VIRION

Non-enveloped, Rod of filaments ut 7nm in diameter and from 700 to 2000nm long.

GENOME

Circular, single-stranded DNA of 4.5 to 8kb encoding for 4 to 10 proteins. Replication occurs via dsDNA intermediate and rolling circle.

GENE EXPRESSION

Each gene is transcribed by host cellular machinery, via a specific promoter. Some genes ends by a transcription terminator.





REPLICATION

CYTOPLASMIC
  1. Virus particle attaches to target cell via g3p protein binding to F pilus. Pilus retraction pulls the virion to the host internal membrane.
  2. Injection of the viral DNA into the host cytoplasm.
  3. Host polymerase convert the (+)ssDNA viral genome into a covalently closed dsDNA called replicative form DNA RF.
  4. viral genes are transcribed by host RNA polymerase.
  5. Viral g2p protein nicks RF DNA strand at the origin of replication.
  6. (+)strand replication occurs by rolling circle.
  7. New (+)ssDNA genomes are converted into new RF molecules, and further transcription occurs.
  8. When enough g5p protein is synthesized, conversion into RF dsDNA is inhibited, as neo-synthesized genomic ssDNA is covered with g5p.
  9. g5p are replaced by g8p proteins to assemble the viral capsid.
  10. new virions bud out from host cell.
  11. Infected cells continue to divide and produces virion indefinitely.

replication cycle

  1. Virus particle attaches to target cell by g3p protein binding of host F pilus. Pilus retraction pulls the virion to the host internal membrane.
  2. The proteins of the capsid inject the DNA core into cell cytoplasm.
  3. Host polymerase convert the (+)ssDNA viral genome into a covalently closed dsDNA called replicative form DNA RF.
  4. viral genes are transcribed by host RNA polymerase.
  5. Viral g2p protein nicks RF DNA strand at the origin of replication.
  6. (+)strand replication occurs by rolling circle.
  7. New (+)ssDNA genomes are converted into new RF molecules, and further transcription occurs.
  8. When enough g5p protein is synthesized, conversion into RF dsDNA is inhibited, as neo-synthesized genomic ssDNA is covered with g5p.
  9. g5p are replaced by g8p proteins to assemble the viral capsid.
  10. new virions bud out from host cell.
  11. Infected cells continue to divide and produces virion indefinitely.

Matching UniProtKB/Swiss-Prot entries

114 entries grouped by protein

All proteins are shown (view only 101 complete proteome entries)

Capsid protein G8P (Coat protein B) (Gene 8 protein) (G8P) (Major coat protein)

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CAPSD_BPM13Enterobacteria phage M13 (Bacteriophage M13) reference strain

Capsid protein G8P (Coat protein B) (Gene 8 protein) (G8P) (M13 procoat) (Major coat protein)

CAPSD_SPV1CSpiroplasma virus SpV1-C74 (SpV1) reference strain

Putative capsid protein ORF9

CAPSD_SPV1RSpiroplasma virus SpV1-R8A2 B (SpV1) (Spiroplasma virus 1) reference strain

Putative capsid protein ORF9 (Gene 9 protein)

CAPSD_BPI22Enterobacteria phage I2-2 (Bacteriophage I2-2)
CAPSD_BPIKEEnterobacteria phage IKe (Bacteriophage IKe)
CAPSD_BPIF1Enterobacteria phage If1 (Bacteriophage If1)
CAPSD_BPZJ2Enterobacteria phage ZJ/2 (Bacteriophage ZJ-2)
CAPSD_BPF1Enterobacteria phage f1 (Bacteriophage f1)
CAPSD_BPFDEnterobacteria phage fd (Bacteriophage fd)
CAPSD_BPPF1Pseudomonas phage Pf1 (Bacteriophage Pf1)
CAPSD_BPPF3Pseudomonas phage Pf3 (Bacteriophage Pf3)

Capsid protein G8P (Coat protein B) (Gene 8 protein) (G8P) (Major coat protein) (Pf3 coat protein)

CAPSD_BPH75Thermus phage PH75 (Bacteriophage PH75)
CAPSD_BPXFXanthomonas phage Xf (Bacteriophage Xf)
CAPSD_BPPHLXanthomonas phage phiLf (Bacteriophage phi-Lf)

Gene 1 protein (G1P)

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G1P_BPM13Enterobacteria phage M13 (Bacteriophage M13) reference strain
G1P_BPI22Enterobacteria phage I2-2 (Bacteriophage I2-2)
G1P_BPIKEEnterobacteria phage IKe (Bacteriophage IKe)
G1P_BPIF1Enterobacteria phage If1 (Bacteriophage If1)
G1P_BPF1Enterobacteria phage f1 (Bacteriophage f1)
G1P_BPFDEnterobacteria phage fd (Bacteriophage fd)
G1P_BPPHLXanthomonas phage phiLf (Bacteriophage phi-Lf)

Attachment protein G3P (Gene 3 protein) (G3P) (Minor coat protein)

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G3P_BPM13Enterobacteria phage M13 (Bacteriophage M13) reference strain
G3P_BPI22Enterobacteria phage I2-2 (Bacteriophage I2-2)
G3P_BPIKEEnterobacteria phage IKe (Bacteriophage IKe)
G3P_BPIF1Enterobacteria phage If1 (Bacteriophage If1)
G3P_BPF1Enterobacteria phage f1 (Bacteriophage f1)
G3P_BPFDEnterobacteria phage fd (Bacteriophage fd)
G3P_BPPF1Pseudomonas phage Pf1 (Bacteriophage Pf1)
G3P_BPPF3Pseudomonas phage Pf3 (Bacteriophage Pf3)
G3P_BPPHLXanthomonas phage phiLf (Bacteriophage phi-Lf)

Virion export protein (Gene 4 protein) (G4P)

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G4P_BPM13Enterobacteria phage M13 (Bacteriophage M13) reference strain
G4P_BPI22Enterobacteria phage I2-2 (Bacteriophage I2-2)
G4P_BPIKEEnterobacteria phage IKe (Bacteriophage IKe)
G4P_BPIF1Enterobacteria phage If1 (Bacteriophage If1)
G4P_BPF1Enterobacteria phage f1 (Bacteriophage f1)
G4P_BPFDEnterobacteria phage fd (Bacteriophage fd)

DNA-Binding protein G5P (G5P) (GPV) (Single-stranded DNA-binding protein)

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G5P_BPM13Enterobacteria phage M13 (Bacteriophage M13) reference strain

DNA-Binding protein G5P (G5P) (Single-stranded DNA-binding protein)

G5P_BPI22Enterobacteria phage I2-2 (Bacteriophage I2-2)

DNA-Binding protein G5P (G5P) (Single-stranded DNA-binding protein)

G5P_BPIKEEnterobacteria phage IKe (Bacteriophage IKe)
G5P_BPIF1Enterobacteria phage If1 (Bacteriophage If1)
G5P_BPF1Enterobacteria phage f1 (Bacteriophage f1)
G5P_BPFDEnterobacteria phage fd (Bacteriophage fd)
G5P_BPPF1Pseudomonas phage Pf1 (Bacteriophage Pf1)
G5P_BPPF3Pseudomonas phage Pf3 (Bacteriophage Pf3)

DNA-Binding protein G5P (G5P) (Single-stranded DNA-binding protein)

G5P_BPPHLXanthomonas phage phiLf (Bacteriophage phi-Lf)

DNA-Binding protein G5P (G5P) (Single-stranded DNA-binding protein)

Head virion protein G6P (Coat protein D) (G6P)

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G6P_BPM13Enterobacteria phage M13 (Bacteriophage M13) reference strain
G6P_BPIKEEnterobacteria phage IKe (Bacteriophage IKe)
G6P_BPIF1Enterobacteria phage If1 (Bacteriophage If1)
G6P_BPF1Enterobacteria phage f1 (Bacteriophage f1)
G6P_BPFDEnterobacteria phage fd (Bacteriophage fd)
G6P_BPPF1Pseudomonas phage Pf1 (Bacteriophage Pf1)
G6P_BPPF3Pseudomonas phage Pf3 (Bacteriophage Pf3)
G6P_BPPHLXanthomonas phage phiLf (Bacteriophage phi-Lf)

Tail virion protein G7P (Coat protein C, polypeptide I) (Gene 7 protein) (G7P)

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G7P_BPM13Enterobacteria phage M13 (Bacteriophage M13) reference strain
G7P_BPI22Enterobacteria phage I2-2 (Bacteriophage I2-2)
G7P_BPIKEEnterobacteria phage IKe (Bacteriophage IKe)
G7P_BPIF1Enterobacteria phage If1 (Bacteriophage If1)
G7P_BPF1Enterobacteria phage f1 (Bacteriophage f1)
G7P_BPFDEnterobacteria phage fd (Bacteriophage fd)
G7P_BPPHLXanthomonas phage phiLf (Bacteriophage phi-Lf)

Tail virion protein G9P (Coat protein C, polypeptIDe II) (G9P)

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G9P_BPM13Enterobacteria phage M13 (Bacteriophage M13) reference strain
G9P_BPI22Enterobacteria phage I2-2 (Bacteriophage I2-2)
G9P_BPIKEEnterobacteria phage IKe (Bacteriophage IKe)
G9P_BPIF1Enterobacteria phage If1 (Bacteriophage If1)
G9P_BPF1Enterobacteria phage f1 (Bacteriophage f1)
G9P_BPFDEnterobacteria phage fd (Bacteriophage fd)
G9P_BPPHLXanthomonas phage phiLf (Bacteriophage phi-Lf)

Bactoprenol-linked glucose translocase


GTRA_BPSFXShigella phage SfX (Shigella flexneri bacteriophage X) (Bacteriophage SfX)

Bactoprenol glucosyl transferase (EC 2.4.1.-)


GTRB_BPSFXShigella phage SfX (Shigella flexneri bacteriophage X) (Bacteriophage SfX)

Putative integrase ORF3

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INTG_SPV1CSpiroplasma virus SpV1-C74 (SpV1) reference strain
INTG_SPV1RSpiroplasma virus SpV1-R8A2 B (SpV1) (Spiroplasma virus 1) reference strain

Putative integrase ORF3 (Gene 3 protein)

INTG_BPPF1Pseudomonas phage Pf1 (Bacteriophage Pf1)

Putative integrase

Uncharacterized protein ORF1

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ORF1_SPV1CSpiroplasma virus SpV1-C74 (SpV1) reference strain
ORF1_SPV1RSpiroplasma virus SpV1-R8A2 B (SpV1) (Spiroplasma virus 1) reference strain

Uncharacterized protein ORF1 (Gene 1 protein)

Uncharacterized protein ORF10

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ORF10_SPV1CSpiroplasma virus SpV1-C74 (SpV1) reference strain
ORF10_SPV1RSpiroplasma virus SpV1-R8A2 B (SpV1) (Spiroplasma virus 1) reference strain

Uncharacterized protein ORF10 (Gene 10 protein)

Uncharacterized protein ORF11

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ORF11_SPV1CSpiroplasma virus SpV1-C74 (SpV1) reference strain
ORF11_SPV1RSpiroplasma virus SpV1-R8A2 B (SpV1) (Spiroplasma virus 1) reference strain

Uncharacterized protein ORF11 (Gene 11 protein)

Uncharacterized protein ORF12

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ORF12_SPV1CSpiroplasma virus SpV1-C74 (SpV1) reference strain
ORF12_SPV1RSpiroplasma virus SpV1-R8A2 B (SpV1) (Spiroplasma virus 1) reference strain

Uncharacterized protein ORF12 (Gene 12 protein)

Uncharacterized protein ORF13


ORF13_SPV1CSpiroplasma virus SpV1-C74 (SpV1) reference strain

Uncharacterized protein ORF14


ORF14_SPV1CSpiroplasma virus SpV1-C74 (SpV1) reference strain

Uncharacterized protein ORF15


ORF15_SPV1CSpiroplasma virus SpV1-C74 (SpV1) reference strain

Uncharacterized protein ORF2

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ORF2_SPV1CSpiroplasma virus SpV1-C74 (SpV1) reference strain
ORF2_SPV1RSpiroplasma virus SpV1-R8A2 B (SpV1) (Spiroplasma virus 1) reference strain

Uncharacterized protein ORF2 (Gene 2 protein)

Uncharacterized protein ORF4

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ORF4_SPV1CSpiroplasma virus SpV1-C74 (SpV1) reference strain
ORF4_SPV1RSpiroplasma virus SpV1-R8A2 B (SpV1) (Spiroplasma virus 1) reference strain

Uncharacterized protein ORF4 (Gene 4 protein)

Uncharacterized protein ORF5

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ORF5_SPV1CSpiroplasma virus SpV1-C74 (SpV1) reference strain
ORF5_SPV1RSpiroplasma virus SpV1-R8A2 B (SpV1) (Spiroplasma virus 1) reference strain

Uncharacterized protein ORF5 (Gene 5 protein)

Uncharacterized protein ORF6 (Gene 6 protein)


ORF6_SPV1RSpiroplasma virus SpV1-R8A2 B (SpV1) (Spiroplasma virus 1) reference strain

Uncharacterized protein ORF7

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ORF7_SPV1CSpiroplasma virus SpV1-C74 (SpV1) reference strain
ORF7_SPV1RSpiroplasma virus SpV1-R8A2 B (SpV1) (Spiroplasma virus 1) reference strain

Uncharacterized protein ORF7 (Gene 7 protein)

Uncharacterized protein ORF8 (Gene 8 protein)


ORF8_SPV1RSpiroplasma virus SpV1-R8A2 B (SpV1) (Spiroplasma virus 1) reference strain

Replication-associated protein G2P (Rep) (EC 3.1.21.-) (EC 6.5.1.1) (G2P) (Gene 2 protein)

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REP_BPM13Enterobacteria phage M13 (Bacteriophage M13) reference strain
REP_BPI22Enterobacteria phage I2-2 (Bacteriophage I2-2)
REP_BPIKEEnterobacteria phage IKe (Bacteriophage IKe)
REP_BPIF1Enterobacteria phage If1 (Bacteriophage If1)
REP_BPF1Enterobacteria phage f1 (Bacteriophage f1)
REP_BPFDEnterobacteria phage fd (Bacteriophage fd)
REP_BPPF3Pseudomonas phage Pf3 (Bacteriophage Pf3)
REP_BPPHLXanthomonas phage phiLf (Bacteriophage phi-Lf)

3.2 kDa protein (ORF 30)


VG030_BPPF1Pseudomonas phage Pf1 (Bacteriophage Pf1)

6.4 kDa protein (ORF 58)


VG058_BPPF3Pseudomonas phage Pf3 (Bacteriophage Pf3)

8.6 kDa protein (ORF 71)

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VG071_BPPF1Pseudomonas phage Pf1 (Bacteriophage Pf1)
VG071_BPPF3Pseudomonas phage Pf3 (Bacteriophage Pf3)

7.9 kDa protein (ORF 71)

Uncharacterized protein ORF83 (ORF083)


VG083_BPPF1Pseudomonas phage Pf1 (Bacteriophage Pf1)

10.1 kDa protein (ORF 90)


VG090_BPPF1Pseudomonas phage Pf1 (Bacteriophage Pf1)

10.9 kDa protein (ORF 96)


VG096_BPPF1Pseudomonas phage Pf1 (Bacteriophage Pf1)

11.2 kDa protein (ORF 103)


VG103_BPPF1Pseudomonas phage Pf1 (Bacteriophage Pf1)

12.0 kDa protein (ORF 110)


VG110_BPPF1Pseudomonas phage Pf1 (Bacteriophage Pf1)

Putative assembly protein ORF301 (ORF301)


VG301_BPPF3Pseudomonas phage Pf3 (Bacteriophage Pf3)

Uncharacterized protein ORF424 (ORF 424)


VG424_BPPF1Pseudomonas phage Pf1 (Bacteriophage Pf1)

Uncharacterized protein ORF430 (ORF430)

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VG430_BPPF1Pseudomonas phage Pf1 (Bacteriophage Pf1)
VG430_BPPF3Pseudomonas phage Pf3 (Bacteriophage Pf3)

Putative assembly protein ORF430 (ORF430)