Nanoviridae

Molecular biology

VIRION

Non-enveloped, round, icosahedral symmetry (T=1), about 18-19 nm in diameter.

GENOME

6 to 8 circular (+)ssDNA about 1kb in size. Each ssDNA have a common stem-loop region and are encapsidated in a separate particle.
In addition to genomic DNA, satellite-lake DNA are commonly found, usually encoding for Rep proteins. These satellite-rep proteins are only able to initiate replication of their genomic DNA, unlike genomic rep which promotes replication of all 6-8 viral genomic ssDNAs.

GENE EXPRESSION

Each genome ssDNA are monocistronic. In rare cases a gene encodes for two overlapping ORF.

REPLICATION

NUCLEAR

  1. Virus penetrates into the host cell.
  2. Uncoating, and release of the viral genomic ssDNA into the nucleus.
  3. The ssDNA is converted into dsDNA with the participation of cellular factors.
  4. bidirectional transcription from the IR promoter produces viral mRNAs and translation of viral proteins.
  5. Replication is initiated by cleavage of the(+)strand by REP, and occurs by rolling circle producing ssDNA genomes
  6. These newly synthesized ssDNA can either
    a) be converted to dsDNA and serve as a template for transcription/replication
    b) be encapsidated by CP and form virions that will be released in the extracellular space.

Matching UniProtKB/Swiss-Prot entries

51 entries grouped by protein

All proteins are shown (view only 49 complete proteome entries)

Capsid protein (CP) (Coat protein)

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CAPSD_BBTVABanana bunchy top virus (isolate Autralia) (BBTV) reference strain
CAPSD_SCSVFSubterranean clover stunt virus (strain F) (SCSV) reference strain
CAPSD_FBNY1Faba bean necrotic yellows virus (isolate Egyptian EV1-93) (FBNYV)
CAPSD_FBNY2Faba bean necrotic yellows virus (isolate SV292-88) (FBNYV)
CAPSD_MDV9Milk vetch dwarf virus (isolate 9) (MDV)
CAPSD_MDV1Milk vetch dwarf virus (isolate N) (MDV)
CAPSD_SCSVJSubterranean clover stunt virus (strain J) (SCSV)

Cell cycle link protein (Clink)

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CLINK_BBTVABanana bunchy top virus (isolate Autralia) (BBTV) reference strain
CLINK_SCSVFSubterranean clover stunt virus (strain F) (SCSV) reference strain
CLINK_FBNY1Faba bean necrotic yellows virus (isolate Egyptian EV1-93) (FBNYV)
CLINK_FBNY2Faba bean necrotic yellows virus (isolate SV292-88) (FBNYV)
CLINK_MDV1Milk vetch dwarf virus (isolate N) (MDV)

Master replication protein (M-Rep) (EC 2.7.7.-) (EC 3.1.21.-) (EC 3.6.1.3)

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MREP_BBTVABanana bunchy top virus (isolate Autralia) (BBTV) reference strain
MREP_SCSVFSubterranean clover stunt virus (strain F) (SCSV) reference strain
MREP_FBNY1Faba bean necrotic yellows virus (isolate Egyptian EV1-93) (FBNYV)

Master replication protein (M-Rep) (EC 2.7.7.-) (EC 3.1.21.-) (EC 3.6.1.3) (ATP-dependent helicase C2) (Replication-associated protein 2) (Rep2)

MREP_FBNY2Faba bean necrotic yellows virus (isolate SV292-88) (FBNYV)

Master replication protein (M-Rep) (EC 2.7.7.-) (EC 3.1.21.-) (EC 3.6.1.3) (ATP-dependent helicase C2) (Replication-associated protein 2) (Rep2)

MREP_MDV1Milk vetch dwarf virus (isolate N) (MDV)

Putative movement protein (MP)

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MVP_BBTVABanana bunchy top virus (isolate Autralia) (BBTV) reference strain

Movement and RNA silencing protein (MP)

MVP_SCSVFSubterranean clover stunt virus (strain F) (SCSV) reference strain
MVP_FBNY1Faba bean necrotic yellows virus (isolate Egyptian EV1-93) (FBNYV)
MVP_FBNY2Faba bean necrotic yellows virus (isolate SV292-88) (FBNYV)
MVP_MDV1Milk vetch dwarf virus (isolate N) (MDV)

Putative nuclear shuttle protein

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NSP_BBTVABanana bunchy top virus (isolate Autralia) (BBTV) reference strain
NSP_SCSVFSubterranean clover stunt virus (strain F) (SCSV) reference strain
NSP_FBNY1Faba bean necrotic yellows virus (isolate Egyptian EV1-93) (FBNYV)
NSP_FBNY2Faba bean necrotic yellows virus (isolate SV292-88) (FBNYV)
NSP_MDV1Milk vetch dwarf virus (isolate N) (MDV)

Para-Rep C1 (Rep1) (EC 2.7.7.-) (EC 3.1.21.-) (EC 3.6.1.3) (ATP-dependent helicase C1) (Replication-associated protein of non-essential DNA C1)

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REP1_FBNY1Faba bean necrotic yellows virus (isolate Egyptian EV1-93) (FBNYV)
REP1_FBNY2Faba bean necrotic yellows virus (isolate SV292-88) (FBNYV)
REP1_MDV1Milk vetch dwarf virus (isolate N) (MDV)

Para-Rep C1 (Rep1) (EC 2.7.7.-) (EC 3.1.21.-) (EC 3.6.1.3) (Replication-associated protein of non-essential DNA C1)

Para-Rep C10 (Rep10) (EC 2.7.7.-) (EC 3.1.21.-) (EC 3.6.1.3) (Replication-associated protein of non-essential DNA C10)


REP10_MDV1Milk vetch dwarf virus (isolate N) (MDV)

Para-Rep C2 (Rep2) (EC 2.7.7.-) (EC 3.1.21.-) (EC 3.6.1.3) (Replication-associated protein of non-essential DNA C2)

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REP2_SCSVFSubterranean clover stunt virus (strain F) (SCSV) reference strain
REP2_MDV1Milk vetch dwarf virus (isolate N) (MDV)

Para-Rep C3 (Rep3) (EC 2.7.7.-) (EC 3.1.21.-) (EC 3.6.1.3) (Replication-associated protein of non-essential DNA C3)


REP3_MDV1Milk vetch dwarf virus (isolate N) (MDV)

Para-Rep C6 (Rep6) (EC 2.7.7.-) (EC 3.1.21.-) (EC 3.6.1.3) (Replication-associated protein of non-essential DNA C6)


REP6_SCSVFSubterranean clover stunt virus (strain F) (SCSV) reference strain

Para-Rep C7 (Rep7) (EC 2.7.7.-) (EC 3.1.21.-) (EC 3.6.1.3) (ATP-dependent helicase C7) (Replication-associated protein of non-essential DNA C7)

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REP7_FBNY1Faba bean necrotic yellows virus (isolate Egyptian EV1-93) (FBNYV)
REP7_FBNY2Faba bean necrotic yellows virus (isolate SV292-88) (FBNYV)

Para-Rep C9 (Rep9) (EC 2.7.7.-) (EC 3.1.21.-) (EC 3.6.1.3) (ATP-dependent helicase C9) (Replication-associated protein of non-essential DNA C9)

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REP9_FBNY1Faba bean necrotic yellows virus (isolate Egyptian EV1-93) (FBNYV)
REP9_FBNY2Faba bean necrotic yellows virus (isolate SV292-88) (FBNYV)

Protein U1

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U1_SCSVFSubterranean clover stunt virus (strain F) (SCSV) reference strain
U1_FBNY1Faba bean necrotic yellows virus (isolate Egyptian EV1-93) (FBNYV)
U1_FBNY2Faba bean necrotic yellows virus (isolate SV292-88) (FBNYV)
U1_MDV1Milk vetch dwarf virus (isolate N) (MDV)

Protein U2

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U2_FBNY1Faba bean necrotic yellows virus (isolate Egyptian EV1-93) (FBNYV)
U2_FBNY2Faba bean necrotic yellows virus (isolate SV292-88) (FBNYV)
U2_MDV1Milk vetch dwarf virus (isolate N) (MDV)

Uncharacterized protein U3


U3_BBTVABanana bunchy top virus (isolate Autralia) (BBTV) reference strain

Protein U4

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U4_FBNY1Faba bean necrotic yellows virus (isolate Egyptian EV1-93) (FBNYV)
U4_FBNY2Faba bean necrotic yellows virus (isolate SV292-88) (FBNYV)
U4_MDV1Milk vetch dwarf virus (isolate N) (MDV)

Uncharacterized 5 kDa protein in M-Rep ORF (Uncharacterized protein U5)


U5_BBTVABanana bunchy top virus (isolate Autralia) (BBTV) reference strain