Flavivirus

Molecular biology

VIRION

Enveloped, spherical, about 50 nm in diameter. The surface proteins are arranged in an icosahedral-like symmetry. Mature virions contain two virus-encoded membrane proteins (M and E), while immature virions contain a membrane protein precursor.
Source: Zhang et al(Pubmed)

GENOME

Monopartite, linear, ssRNA(+) genome of of 10-11 kb. The genome 3’ terminus is not polyadenylated but forms a loop structure. The 5’ end has a methylated nucleotide cap (allows for translation) or a genome-linked protein (VPg).

GENE EXPRESSION

The virion RNA is infectious and serves as both the genome and the viral messenger RNA. The whole genome is translated in a polyprotein, which is processed co- and post-translationally by host and viral proteases.

REPLICATION

  1. Virus attaches to host receptors through E glycoprotein and is endocytosed into vesicles in the host cell.
  2. Fusion of virus membrane with the vesicle membrane; RNA genome is released into the cytoplasm.
  3. The positive-sense genomic ssRNA is translated into a polyprotein, which is cleaved into all structural and non structural proteins.
  4. Replication takes place at the surface of endoplasmic reticulum. A negative-sense complementary ssRNA is synthesized using the genomic RNA as a template.
  5. New genomic RNA is synthesized using the negative-sense RNA as a template.
  6. Virus assembly occurs at the endoplasmic reticulum. The virion buds at the endoplasmic reticulum, is transported to the Golgi apparatus, and then bud from the cell membrane.

Matching UniProtKB/Swiss-Prot entries

42 entries grouped by protein

Genome polyprotein

Select_all Deselect_all  
POLG_DEN1WDengue virus type 1 (strain Nauru/West Pac/1974) (DENV-1) reference strain
POLG_YEFV1Yellow fever virus (strain 17D vaccine) (YFV) reference strain
POLG_DEN1BDengue virus type 1 (strain Brazil/97-11/1997) (DENV-1)
POLG_DEN1SDengue virus type 1 (strain Singapore/S275/1990) (DENV-1)
POLG_DEN28Dengue virus type 2 (isolate Thailand/0168/1979) (DENV-2)
POLG_DEN27Dengue virus type 2 (strain 16681-PDK53) (DENV-2)
POLG_DEN2JDengue virus type 2 (strain Jamaica/1409/1983) (DENV-2)
POLG_DEN2QDengue virus type 2 (strain Peru/IQT2913/1996) (DENV-2)
POLG_DEN2PDengue virus type 2 (strain Puerto Rico/PR159-S1/1969) (DENV-2)
POLG_DEN26Dengue virus type 2 (strain Thailand/16681/1984) (DENV-2)
POLG_DEN2NDengue virus type 2 (strain Thailand/NGS-C/1944) (DENV-2)
POLG_DEN3CDengue virus type 3 (strain China/80-2/1980) (DENV-3)
POLG_DEN3MDengue virus type 3 (strain Martinique/1243/1999) (DENV-3)
POLG_DEN3PDengue virus type 3 (strain Philippines/H87/1956) (DENV-3)
POLG_DEN3IDengue virus type 3 (strain Singapore/8120/1995) (DENV-3)
POLG_DEN3SDengue virus type 3 (strain Sri Lanka/1266/2000) (DENV-3)
POLG_DEN4DDengue virus type 4 (strain Dominica/814669/1981) (DENV-4)
POLG_DEN4PDengue virus type 4 (strain Philippines/H241/1956) (DENV-4)
POLG_DEN4SDengue virus type 4 (strain Singapore/8976/1995) (DENV-4)
POLG_DEN4TDengue virus type 4 (strain Thailand/0348/1991) (DENV-4)
POLG_DEN4HDengue virus type 4 (strain Thailand/0476/1997) (DENV-4)
POLG_JAEVJJapanese encephalitis virus (strain Jaoars982)
POLG_JAEV5Japanese encephalitis virus (strain SA(v))
POLG_JAEV1Japanese encephalitis virus (strain SA-14)
POLG_KUNJMKunjin virus (strain MRM61C)
POLG_LANVTLangat virus (strain TP21)
POLG_LIVLouping ill virus (Li)
POLG_MCFAMosquito cell fusing agent (CFA flavivirus)
POLG_MVEV5Murray valley encephalitis virus (strain MVE-1-51) (MVEV)
POLG_TBEVHTick-borne encephalitis virus (strain Hypr) (TBEV)
POLG_TBEVWTick-borne encephalitis virus European subtype (strain Neudoerfl) (NEUV) ...
POLG_TBEVSTick-borne encephalitis virus Far Eastern subtype (strain Sofjin) (SOFV) ...
POLG_POWVLTick-borne powassan virus (strain LB) (POWV) (Powassan virus)
POLG_WNVWest Nile virus (WNV)
POLG_YEFVNYellow fever virus (isolate Angola/14FA/1971) (YFV)
POLG_YEFVEYellow fever virus (isolate Ethiopia/Couma/1961) (YFV)
POLG_YEFVCYellow fever virus (isolate Ivory Coast/1999) (YFV)
POLG_YEFVIYellow fever virus (isolate Ivory Coast/85-82H/1982) (YFV)
POLG_YEFVUYellow fever virus (isolate Uganda/A7094A4/1948) (YFV)
POLG_YEFVFYellow fever virus (strain French neurotropic vaccine FNV) (YFV)
POLG_YEFVAYellow fever virus (strain Ghana/Asibi/1927) (YFV)
POLG_YEFVTYellow fever virus (strain Trinidad/TRINID79A/1979) (YFV)