P2-like viruses

Molecular biology

VIRION

Non-enveloped, head-tail structure. The icosahedral head is about 60 nm. The capsid has an elongated icosahedral symmetry T=13 Q=21, composed of 152 capsomers. The tails is contractile, has 6 long terminal fibers, 6 short spikes and base plate.

GENOME

Linear, dsDNA genome of about 34 kb, encoding for approximately 45 proteins.

GENE EXPRESSION

Genes are transcribed by operons.

REPLICATION

CYTOPLASMIC

  1. Adsorption: the phage attaches to target cell through its tail fibers.
  2. Viral lysozyme degrades cell wall locally
  3. Injection: viral DNA is injected in host cell periplasm by contraction of the tail
  4. Transcription and traduction of early genes
  5. Replication of genomic DNA
  6. Transcription and traduction of late genes
  7. Assembly of new virions in host cell cytoplasm
  8. Mature virions are released from the cell by lysis

Matching UniProtKB/Swiss-Prot entries

105 entries grouped by protein

Uncharacterized 8.4 kDa protein


CP69_BP186Enterobacteria phage 186 (Bacteriophage 186)

Uncharacterized 8.8 kDa protein in GpA 5'region


CP79_BP186Enterobacteria phage 186 (Bacteriophage 186)

Uncharacterized 8.5 kDa protein in gpA 5'region


CP80_BP186Enterobacteria phage 186 (Bacteriophage 186)

Uncharacterized exonuclease CP81 (EC 3.1.-.-)


CP81_BP186Enterobacteria phage 186 (Bacteriophage 186)

Uncharacterized 10.4 kDa protein in GpA 5'region


CP83_BP186Enterobacteria phage 186 (Bacteriophage 186)

Uncharacterized 37.8 kDa protein in gpa 5'region


CP84_BP186Enterobacteria phage 186 (Bacteriophage 186)

Protein gop


GOP_BPP4Enterobacteria phage P4 (Bacteriophage P4)

Holin

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HOLI_BPP2Enterobacteria phage P2 (Bacteriophage P2) reference strain
HOLI_BPHP1Haemophilus phage HP1 (Bacteriophage HP1)

Lysozyme (EC 3.2.1.17) (Endolysin) (Lysis protein) (Muramidase) (Protein gpK)

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LYS_BPP2Enterobacteria phage P2 (Bacteriophage P2) reference strain
LYS_BPHP1Haemophilus phage HP1 (Bacteriophage HP1)

Lysozyme (EC 3.2.1.17) (Endolysin) (Lysis protein) (Muramidase)

Protein lysA


LYSA_BPP2Enterobacteria phage P2 (Bacteriophage P2) reference strain

Protein lysB


LYSB_BPP2Enterobacteria phage P2 (Bacteriophage P2) reference strain

Presumed portal vertex protein (GpQ)

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PORTL_BPP2Enterobacteria phage P2 (Bacteriophage P2) reference strain
PORTL_BPHP1Haemophilus phage HP1 (Bacteriophage HP1)

Probable portal protein (ORF15)

Putative P4-specific DNA primase (EC 2.7.7.-) (EC 3.6.4.12)


PRIM_BPP4Enterobacteria phage P4 (Bacteriophage P4)

Protein cII


RCII_BPP4Enterobacteria phage P4 (Bacteriophage P4)

Replication protein (EC 3.1.-.-)


REP_BPHP1Haemophilus phage HP1 (Bacteriophage HP1)

Repressor protein C


RPC_BPP2Enterobacteria phage P2 (Bacteriophage P2) reference strain

Repressor protein CI

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RPC1_BP186Enterobacteria phage 186 (Bacteriophage 186)
RPC1_BPHP1Haemophilus phage HP1 (Bacteriophage HP1)

Regulatory protein CII


RPC2_BP186Enterobacteria phage 186 (Bacteriophage 186)

Probable tail fiber assembly protein (GpG)


TFA_BPP2Enterobacteria phage P2 (Bacteriophage P2) reference strain

SOS operon TUM protein (ORF95 protein) (Protein TUM95)


TUM_BP186Enterobacteria phage 186 (Bacteriophage 186)

Protein apl


VAPL_BP186Enterobacteria phage 186 (Bacteriophage 186)

Protein ash (Protein cI)


VASH_BPP4Enterobacteria phage P4 (Bacteriophage P4)

Protein beta


VBET_BPP4Enterobacteria phage P4 (Bacteriophage P4)

Regulatory protein cox

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VCOX_BPP2Enterobacteria phage P2 (Bacteriophage P2) reference strain
VCOX_BPHP1Haemophilus phage HP1 (Bacteriophage HP1)

Transactivation protein


VDEL_BPP4Enterobacteria phage P4 (Bacteriophage P4)

Protein dhr


VDHR_BP186Enterobacteria phage 186 (Bacteriophage 186)

Derepression protein


VEPS_BPP4Enterobacteria phage P4 (Bacteriophage P4)

Protein fil


VFIL_BP186Enterobacteria phage 186 (Bacteriophage 186)

Integrase

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VINT_BPP2Enterobacteria phage P2 (Bacteriophage P2) reference strain
VINT_BP186Enterobacteria phage 186 (Bacteriophage 186)
VINT_BPP4Enterobacteria phage P4 (Bacteriophage P4)
VINT_BPHP1Haemophilus phage HP1 (Bacteriophage HP1)

Late control protein ogr


VOGR_BPP2Enterobacteria phage P2 (Bacteriophage P2) reference strain

Overcoming lysogenization defect protein


VOLD_BPP2Enterobacteria phage P2 (Bacteriophage P2) reference strain

Replication gene A protein (EC 3.1.-.-) (GpA)

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VPA_BPP2Enterobacteria phage P2 (Bacteriophage P2) reference strain
VPA_BP186Enterobacteria phage 186 (Bacteriophage 186)

Replication gene B protein (GpB)

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VPB_BPP2Enterobacteria phage P2 (Bacteriophage P2) reference strain
VPB_BP186Enterobacteria phage 186 (Bacteriophage 186)

Late control gene B protein (GpB)

Gene D protein (GpD)

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VPD_BPP2Enterobacteria phage P2 (Bacteriophage P2) reference strain
VPD_BP186Enterobacteria phage 186 (Bacteriophage 186)

Late control gene D protein (GpD)

Major tail sheath protein (Protein FI)


VPF1_BPP2Enterobacteria phage P2 (Bacteriophage P2) reference strain

Major tail tube protein (Protein FII)


VPF2_BPP2Enterobacteria phage P2 (Bacteriophage P2) reference strain

Probable tail fiber protein (GpH)

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VPH_BPP2Enterobacteria phage P2 (Bacteriophage P2) reference strain
VPH_BPHP1Haemophilus phage HP1 (Bacteriophage HP1)

Probable tail fiber protein (ORF31)

Tail protein I (GpI)


VPI_BPP2Enterobacteria phage P2 (Bacteriophage P2) reference strain

Baseplate assembly protein J (GpJ)


VPJ_BPP2Enterobacteria phage P2 (Bacteriophage P2) reference strain

Head completion/stabilization protein (GpL)

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VPL_BPP2Enterobacteria phage P2 (Bacteriophage P2) reference strain
VPL_BPHP1Haemophilus phage HP1 (Bacteriophage HP1)

Probable head completion/stabilization protein (ORF20)

Terminase, endonuclease subunit (GpM)

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VPM_BPP2Enterobacteria phage P2 (Bacteriophage P2) reference strain
VPM_BPHP1Haemophilus phage HP1 (Bacteriophage HP1)

Probable terminase, endonuclease subunit (ORF19)

Capsid proteins (GpN)

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VPN_BPP2Enterobacteria phage P2 (Bacteriophage P2) reference strain
VPN_BPHP1Haemophilus phage HP1 (Bacteriophage HP1)

Major capsid protein (ORF18)

Presumed capsid-scaffolding protein (GpO)

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VPO_BPP2Enterobacteria phage P2 (Bacteriophage P2) reference strain
VPO_BPHP1Haemophilus phage HP1 (Bacteriophage HP1)

Probable capsid-scaffolding protein (ORF17)

Terminase, ATPase subunit (GpP)

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VPP_BPP2Enterobacteria phage P2 (Bacteriophage P2) reference strain
VPP_BPHP1Haemophilus phage HP1 (Bacteriophage HP1)

Probable terminase, ATPase subunit (ORF16)

Tail completion protein R (GpR)


VPR_BPP2Enterobacteria phage P2 (Bacteriophage P2) reference strain

Tail completion protein S (GpS)


VPS_BPP2Enterobacteria phage P2 (Bacteriophage P2) reference strain

Polarity suppression protein (Amber mutation-suppressing protein)


VPSU_BPP4Enterobacteria phage P4 (Bacteriophage P4)

Baseplate assembly protein V (GpV)


VPV_BPP2Enterobacteria phage P2 (Bacteriophage P2) reference strain

Baseplate assembly protein W (GpW)


VPW_BPP2Enterobacteria phage P2 (Bacteriophage P2) reference strain

Tail protein X (GpX)


VPX_BPP2Enterobacteria phage P2 (Bacteriophage P2) reference strain

Glycoprotein 3 (Capsid size determination protein)


VSID_BPP4Enterobacteria phage P4 (Bacteriophage P4)

Uncharacterized protein ORF88 (Putative DNA-binding protein)


Y9K_BPP4Enterobacteria phage P4 (Bacteriophage P4)

Uncharacterized 23.2 kDa protein in int-C1 intergenic region (ORF1)


YO01_BPHP1Haemophilus phage HP1 (Bacteriophage HP1)

Uncharacterized 7.9 kDa protein in int-C1 intergenic region (ORF16) (ORF2)


YO02_BPHP1Haemophilus phage HP1 (Bacteriophage HP1)

Uncharacterized 8.9 kDa protein in int-C1 intergenic region (ORF17) (ORF3)


YO03_BPHP1Haemophilus phage HP1 (Bacteriophage HP1)

Uncharacterized 8.9 kDa protein in int-C1 intergenic region (ORF18) (ORF4)


YO04_BPHP1Haemophilus phage HP1 (Bacteriophage HP1)

Uncharacterized 19.2 kDa protein in cox-rep intergenic region (ORF21) (ORF5)


YO05_BPHP1Haemophilus phage HP1 (Bacteriophage HP1)

Uncharacterized 14.1 kDa protein in cox-rep intergenic region (ORF22) (ORF6)


YO06_BPHP1Haemophilus phage HP1 (Bacteriophage HP1)

Uncharacterized 7.3 kDa protein in cox-rep intergenic region (ORF23) (ORF7)


YO07_BPHP1Haemophilus phage HP1 (Bacteriophage HP1)

Uncharacterized 10.8 kDa protein in cox-rep intergenic region (ORF24) (ORF8)


YO08_BPHP1Haemophilus phage HP1 (Bacteriophage HP1)

Uncharacterized 9.7 kDa protein in cox-rep intergenic region (ORF25) (ORF9)


YO09_BPHP1Haemophilus phage HP1 (Bacteriophage HP1)

Uncharacterized 11.1 kDa protein in rep-hol intergenic region (ORF10)


YO10_BPHP1Haemophilus phage HP1 (Bacteriophage HP1)

Uncharacterized 8.3 kDa protein in rep-hol intergenic region (ORF11)


YO11_BPHP1Haemophilus phage HP1 (Bacteriophage HP1)

Uncharacterized 18.2 kDa protein in rep-hol intergenic region (ORF12)


YO12_BPHP1Haemophilus phage HP1 (Bacteriophage HP1)

Uncharacterized adenine-specific methylase (EC 2.1.1.72) (ORF13)


YO13_BPHP1Haemophilus phage HP1 (Bacteriophage HP1)

Uncharacterized 14.9 kDa protein in rep-hol intergenic region (ORF14)


YO14_BPHP1Haemophilus phage HP1 (Bacteriophage HP1)

Uncharacterized 19.2 kDa protein in rep-hol intergenic region (ORF21)


YO21_BPHP1Haemophilus phage HP1 (Bacteriophage HP1)

Uncharacterized 26.0 kDa protein in rep-hol intergenic region (ORF22)


YO22_BPHP1Haemophilus phage HP1 (Bacteriophage HP1)

Putative tail sheath protein (ORF23)


YO23_BPHP1Haemophilus phage HP1 (Bacteriophage HP1)

Putative tail tube protein (ORF24)


YO24_BPHP1Haemophilus phage HP1 (Bacteriophage HP1)

Uncharacterized 13.1 kDa protein in lys 3'region (ORF25)


YO25_BPHP1Haemophilus phage HP1 (Bacteriophage HP1)

Uncharacterized 11.3 kDa protein in lys 3'region (ORF26)


YO26_BPHP1Haemophilus phage HP1 (Bacteriophage HP1)

Uncharacterized 72.8 kDa protein in lys 3'region (ORF27)


YO27_BPHP1Haemophilus phage HP1 (Bacteriophage HP1)

Uncharacterized 12.7 kDa protein in lys 3'region (ORF28)


YO28_BPHP1Haemophilus phage HP1 (Bacteriophage HP1)

Uncharacterized 44.2 kDa protein in lys 3'region (ORF29)


YO29_BPHP1Haemophilus phage HP1 (Bacteriophage HP1)

Uncharacterized 20.8 kDa protein in lys 3'region (ORF30)


YO30_BPHP1Haemophilus phage HP1 (Bacteriophage HP1)

Uncharacterized 23.3 kDa protein in lys 3'region (ORF32)


YO32_BPHP1Haemophilus phage HP1 (Bacteriophage HP1)

Uncharacterized 28.3 kDa protein in lys 3'region (ORF33)


YO33_BPHP1Haemophilus phage HP1 (Bacteriophage HP1)

Uncharacterized 20.8 kDa protein in lys 3'region (ORF34)


YO34_BPHP1Haemophilus phage HP1 (Bacteriophage HP1)

Uncharacterized 58.7 kDa protein in lys 3'region (ORF35)


YO35_BPHP1Haemophilus phage HP1 (Bacteriophage HP1)

Uncharacterized 8.3 kDa protein in GpA 5'region (ORF1)


YO80_BPP2Enterobacteria phage P2 (Bacteriophage P2) reference strain

Uncharacterized 11.3 kDa protein in GpA 5'region (ORF2)


YO81_BPP2Enterobacteria phage P2 (Bacteriophage P2) reference strain

Uncharacterized 8.2 kDa protein in gpA 5'region (ORF3)


YO82_BPP2Enterobacteria phage P2 (Bacteriophage P2) reference strain

Uncharacterized 10.2 kDa protein in GpA 5'region (ORF4)


YO83_BPP2Enterobacteria phage P2 (Bacteriophage P2) reference strain

Uncharacterized 12.9 kDa protein in GpA 3'region (ORF5)


YO91_BPP2Enterobacteria phage P2 (Bacteriophage P2) reference strain

Uncharacterized protein ORF151


YQ54_BPP4Enterobacteria phage P4 (Bacteriophage P4)

Uncharacterized protein ORF106


YQ55_BPP4Enterobacteria phage P4 (Bacteriophage P4)

Uncharacterized 30.4 kDa protein in S-V intergenic region (ORF-30)


YSV_BPP2Enterobacteria phage P2 (Bacteriophage P2) reference strain