Tymoviridae

VIRION

Non-enveloped, isometric capsid with T=3 icosahedral symmetry, about 30 nm in diameter.

GENOME

Monopartite, linear, C-rich, ssRNA(+) genome of 6-7.5 kb. The 3’-terminus may have a tRNA-like structure or a polyA tract, depending upon the virus.

GENE EXPRESSION

The virion RNA is infectious and serves as both the genome and viral messenger RNA. The genomic RNA encodes a large replication polyprotein which is cleaved. The capsid protein is translated from a 3’-coterminal subgenomic RNA. There are additional ORFs in some genera.

REPLICATION

CYTOPLASMIC

  1. Virus penetrates into the host cell.
  2. Uncoating, and release of the viral genomic RNA into the cytoplasm.
  3. The viral RNA is translated to produce the protein necessary for RNA synthesis (replication and transcription).
  4. Replication occurs in viral factories. A dsRNA genome is synthesized from the genomic ssRNA(+).
  5. The dsRNA genome is transcribed/replicated thereby providing viral mRNAs/new ssRNA(+) genomes.
  6. The RdRp recognizes an internal subgenomic promoter on the negative-sense RNA to transcribe the 3’co-terminal subgenomic RNA that will generate the capsid protein.
  7. Assembly of new virus particles.

Host-virus interaction

Modulation of host ubiquitin pathway by virus

Turnip yellow mosaic virus 98K replication protein counteracts degradation of its RNA-dependent RNA polymerase (RdRp) by the host ubiquitin-proteasome system. The viral 98K replication protein mediates deubiquitylation of RdRp leading to its stabilization .

Matching UniProtKB/Swiss-Prot entries

28 entries grouped by protein

All proteins are shown (view only 18 complete proteome entries)

Capsid protein (CP) (Coat protein)


CAPSD_GFKVMGrapevine fleck virus (isolate Italy/MT48) (GFkV) reference strain

Coat protein (Virion protein)

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COAT_TYMVTurnip yellow mosaic virus reference strain
COAT_BMDVBelladonna mottle virus (BMDV)
COAT_CAYMVCacao yellow mosaic virus
COAT_EPMVEggplant mosaic virus
COAT_ELVErysimum latent virus (ELV)
COAT_KYMVJKennedya yellow mosaic virus (strain Jervis bay) (KYMV)
COAT_OYMVOnonis yellow mosaic virus
COAT_PHMVPhysalis mottle virus (PhMV) (Belladonna mottle virus-Iowa)
COAT_TYMVATurnip yellow mosaic virus (isolate Australia)

Putative movement protein


MOVP_MRFVCMaize rayado fino virus (isolate Costa Rica/Guapiles) (MRFV) reference strain

Uncharacterized protein ORF3


ORF3_GFKVMGrapevine fleck virus (isolate Italy/MT48) (GFkV) reference strain

Uncharacterized protein ORF4


ORF4_GFKVMGrapevine fleck virus (isolate Italy/MT48) (GFkV) reference strain

69 kDa protein (p69)

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P69_TYMVTurnip yellow mosaic virus reference strain
P69_EPMVEggplant mosaic virus

70 kDa protein

P69_OYMVOnonis yellow mosaic virus

66 kDa protein

P69_TYMVATurnip yellow mosaic virus (isolate Australia)
P69_TYMVCTurnip yellow mosaic virus (isolate TYMC)

Genome polyprotein


POLG_MRFVCMaize rayado fino virus (isolate Costa Rica/Guapiles) (MRFV) reference strain

RNA replicase polyprotein (EC 2.7.7.48)

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POLR_TYMVTurnip yellow mosaic virus reference strain

RNA replicase polyprotein (206 kDa polyprotein)

POLR_EPMVEggplant mosaic virus
POLR_ELVErysimum latent virus (ELV)
POLR_KYMVJKennedya yellow mosaic virus (strain Jervis bay) (KYMV)
POLR_OYMVOnonis yellow mosaic virus
POLR_TYMVATurnip yellow mosaic virus (isolate Australia)
POLR_TYMVCTurnip yellow mosaic virus (isolate TYMC)

RNA replication protein


RDRP_GFKVMGrapevine fleck virus (isolate Italy/MT48) (GFkV) reference strain

Uncharacterized 48 kDa protein


Y48K_ELVErysimum latent virus (ELV)