Inhibition of host MHC class II molecule presentation by virus

MHC (major histocompatibility complex) Class II molecules are found only on a few specialized cells termed professional antigen-presenting cells (APCs). This group includes macrophages, dendritic cells and B cells.

nef US2

Several viruses interfere with MHC class II peptide presentation to avoid recognition and increase virus survival. They can either “intercept” the loaded MHC class II molecules and retain them in the endoplasmic reticulum or target them to degradation. For instance, cytomegalovirus US2 destroys two components of the MHC class II pathway, HLA-DR-alpha and DM-alpha, preventing recognition by CD4+ T cells. HIV-1 Nef is able to disrupt MHC class II-mediated antigen presentation by a dual strategy that comprises a reduction in cell surface levels of peptide-loaded mature MHC class II molecules and a up-regulation of immature MHC class II molecules. Vaccinia virus A35 protein localizes to endosomes and reduces the amount of a model antigenic peptide displayed in the cleft of MHC class II.

Matching UniProtKB/Swiss-Prot entries

44 entries grouped by protein

All proteins are shown (view only 22 complete proteome entries)

Protein A35

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A35_VACCWVaccinia virus (strain Western Reserve) (VACV) (Vaccinia virus (strain WR)) reference strain
A35_VACCCVaccinia virus (strain Copenhagen) (VACV)

Protein Nef (3'ORF) (Negative factor) (F-protein)

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NEF_HV1H2Human immunodeficiency virus type 1 group M subtype B (isolate HXB2) (HIV-1) reference strain

Nef protein (3'ORF) (Negative factor) (F-protein)

NEF_HV1MAHuman immunodeficiency virus type 1 group M subtype A (isolate MAL) (HIV-1)
NEF_HV1U4Human immunodeficiency virus type 1 group M subtype A (isolate U455) (HIV-1)
NEF_HV1ZHHuman immunodeficiency virus type 1 group M subtype A (isolate Z321) (HIV-1)
NEF_HV1A2Human immunodeficiency virus type 1 group M subtype B (isolate ARV2/SF2) (HIV-1)
NEF_HV1B1Human immunodeficiency virus type 1 group M subtype B (isolate BH10) (HIV-1)
NEF_HV1B8Human immunodeficiency virus type 1 group M subtype B (isolate BH8) (HIV-1)
NEF_HV1BRHuman immunodeficiency virus type 1 group M subtype B (isolate BRU/LAI) (HIV-1)
NEF_HV1BNHuman immunodeficiency virus type 1 group M subtype B (isolate BRVA) (HIV-1)
NEF_HV1H3Human immunodeficiency virus type 1 group M subtype B (isolate HXB3) (HIV-1)
NEF_HV1JRHuman immunodeficiency virus type 1 group M subtype B (isolate JRCSF) (HIV-1)
NEF_HV1LWHuman immunodeficiency virus type 1 group M subtype B (isolate LW123) (HIV-1)
NEF_HV1MNHuman immunodeficiency virus type 1 group M subtype B (isolate MN) (HIV-1)
NEF_HV1OYHuman immunodeficiency virus type 1 group M subtype B (isolate OYI) (HIV-1)
NEF_HV112Human immunodeficiency virus type 1 group M subtype B (isolate PCV12) (HIV-1)
NEF_HV1RHHuman immunodeficiency virus type 1 group M subtype B (isolate RF/HAT3) (HIV-1)
NEF_HV1SCHuman immunodeficiency virus type 1 group M subtype B (isolate SC) (HIV-1)
NEF_HV1S1Human immunodeficiency virus type 1 group M subtype B (isolate SF162) (HIV-1)
NEF_HV1S3Human immunodeficiency virus type 1 group M subtype B (isolate SF33) (HIV-1)
NEF_HV1Y2Human immunodeficiency virus type 1 group M subtype B (isolate YU-2) (HIV-1)
NEF_HV1B9Human immunodeficiency virus type 1 group M subtype B (strain 89.6) (HIV-1)
NEF_HV192Human immunodeficiency virus type 1 group M subtype C (isolate 92BR025) (HIV-1)
NEF_HV1ETHuman immunodeficiency virus type 1 group M subtype C (isolate ETH2220) (HIV-1)
NEF_HV1ELHuman immunodeficiency virus type 1 group M subtype D (isolate ELI) (HIV-1)
NEF_HV1NDHuman immunodeficiency virus type 1 group M subtype D (isolate NDK) (HIV-1)
NEF_HV1Z6Human immunodeficiency virus type 1 group M subtype D (isolate Z6) (HIV-1)
NEF_HV193Human immunodeficiency virus type 1 group M subtype F1 (isolate 93BR020) (HIV-1)
NEF_HV1VIHuman immunodeficiency virus type 1 group M subtype F1 (isolate VI850) (HIV-1)
NEF_HV1MPHuman immunodeficiency virus type 1 group M subtype F2 (isolate MP255) (HIV-1)
NEF_HV1M2Human immunodeficiency virus type 1 group M subtype F2 (isolate MP257) (HIV-1)
NEF_HV19NHuman immunodeficiency virus type 1 group M subtype G (isolate 92NG083) (HIV-1)
NEF_HV1SEHuman immunodeficiency virus type 1 group M subtype G (isolate SE6165) (HIV-1)
NEF_HV190Human immunodeficiency virus type 1 group M subtype H (isolate 90CF056) (HIV-1)
NEF_HV1V9Human immunodeficiency virus type 1 group M subtype H (isolate VI991) (HIV-1)
NEF_HV1S9Human immunodeficiency virus type 1 group M subtype J (isolate SE9173) (HIV-1)
NEF_HV1S2Human immunodeficiency virus type 1 group M subtype J (isolate SE9280) (HIV-1)
NEF_HV196Human immunodeficiency virus type 1 group M subtype K (isolate 96CM-MP535) ...
NEF_HV197Human immunodeficiency virus type 1 group M subtype K (isolate 97ZR-EQTB11) ...
NEF_HV1YBHuman immunodeficiency virus type 1 group N (isolate YBF106) (HIV-1)
NEF_HV1YFHuman immunodeficiency virus type 1 group N (isolate YBF30) (HIV-1)
NEF_HV1ANHuman immunodeficiency virus type 1 group O (isolate ANT70) (HIV-1)
NEF_HV1MVHuman immunodeficiency virus type 1 group O (isolate MVP5180) (HIV-1)