Viral initiation of translation: IRES and DLP

Many viruses have evolved specific ways to initiate viral mRNA translation.The reason is either that the virus shutoff classic host translation, or because the viral RNAs are non-classical, missing a cap or polyadenylation.

Internal Ribosome Entry Site (IRES) are RNA structures that allow cap independent initiation of translation, and are able to initiate translation in the middle of a messenger RNA. Cripavirus IRES also allow the translation initiation on a Alanine or Glutamine tRNA.
Downstream Hairpin Loop (DLP) are RNA structures that allow initiation of cap dependent translation in the absence of eIF2 initiation factor, where the initiating methionine tRNA is placed by the DLP structure on the ribosome.

Family Genus Type Species GROUP Initiation codon Host References
Dicistroviridae Cripavirus Cricket paralysis virus CrPV IRES Group I Alanine
Glutamine
Insects
Flaviviridae Hepacivirus Pestivirus Hepatitis C virus
Bovine diarrhea virus
IRES Group II Methionine Vertebrate
Picornaviridae Cardiovirus Aphtovirus Encephalomyocarditis virus
Foot and mouth disease virus
IRES Group III Methionine Vertebrate
Picornaviridae Enterovirus Hepatovirus Poliovirus
Hepatitis A virus
IRES Group IV Methionine Vertebrate
Polyomaviridae Polyomavirus SV40 IRES Methionine Vertebrate
Retroviridae Alpharetrovirus Rous sarcoma virus IRES Methionine Vertebrate
Betaretrovirus Mouse mammary tumor virus
Gammaretrovirus Murine leukemia virus
Deltaretrovirus Human T-lymphotropic virus
Lentivirus Human immunodeficiency virus
Togaviridae Alphavirus Sindbis virus DLP Methionine Vertebrate
Rubivirus Rubella virus DLP Methionine Vertebrate
Tombusviridae Carmovirus Pelargonium flower break virus IRES Methionine Plant
Totiviridae Giardiavirus Giardia lamblia virus IRES Methionine Protozoa