Viral penetration into host nucleus

Most DNA and few RNA viruses target their genome to the host nucleus. The crossing of nuclear membrane occurs in several ways :
-RNA virus, dsDNA virus and lentivirus genomes enter via the nuclear pore complex through the cellular Importin transport.
-ssDNA virus capsid seems to be small enough to cross the NPC and enter the nucleus as an intact capsid.
-Hepadnaviridae capsid would enter the NPC pore, but remains attached to it and releases the viral genomic DNA into the nucleoplasm.
-Herpesvirales capsid is too large to enter the NPC pore, the viral genome is directly injected through the NPC on which the capsid docks.
-All retroviridae except lentivirus would enter the nucleus during mitosis, when the nuclear membrane temporarily disintegrates.

All these strategies to cross the nuclear envelope barrier are associated with various levels of capsid disassembly, since virus can pass intact (e.g. parvoviridae) or, in the case of injection, only the viral genome enters the nucleus (e.g. herpesviruses). Genome integration in the host genome may eventually follow .



FamilyVirusViral proteinHost proteinProcessReference
HerpesviridaeHSV-1capsidImportin-betacapsid docking at nuclear pore
capsidNup358capsid docking at nuclear pore
pUL25, capsidNup214capsid docking at nuclear pore; DNA release
pUL25hCG1 (NUPL-2)binds free pUL25; might be involved in capsid docking at nuclear pore
pUL25unknown, likely NPC componentuncoating of DNA at the NPC; soluble pUL25 inhibited uncoating but not NPC docking
PolyomaviridaeSV40VP1/2/3general nuclear transport machinerycapsid delivery to the nucleus; all VPs contain classical NLSs which likely use the importin-alpha/beta pathway
VP1 pentamer caspase-6, Lamin A/Cdisruption of nuclear lamins by caspase-6 in order for capsids to penetrate INM from ER; fluctuations in Lamin A/C levels and associated phosphorylation at an unidentified residue in quiescent cells
AdenoviridaeAd2/5Crm1, Hsp70nuclear targeting of capsids
Ad2Nup214, Importin-beta and importin-7, Histone H1nuclear targeting of capsids via adapter protein histone H1
hexonNup214/62/358capsids bind Nup214/88/358 to dock at the NPC; Nup358 recruits kinesin heavy chain Kif5c to promote capsid disintegration; simultaneously leads to NPC perturbation
pVIIImportin-alpha/beta, Importin-7, Transportin-1nuclear import of Ad genomic DNA post-docking
hexonImportin-alpha/beta, Nupsnuclear docking of capsids
Baculo-viridaeAcMNPVImportin-betanuclear delivery of capsids
Parvo-viridaeMVMproteasomenuclear delivery of capsids
Caspase-3, lamin B2NE disruption (ONM) by digestion of lamin B2
wtAAV2unknown (unknown mechanism but independent from trafficking through the NPC)
recAAV2Importin-beta, Importin-7, NPCnuclear delivery of capsids
H1Nup62, Nup153, Nup214, Nup358, PKCa, Cdk1/2, Caspase-3, Laminsbinding to NPC via alternative mechanism leads to subsequent disruption of the ONM and INM via the mitotic kinase-protease axis
OrthomyxoviridaeInfluenza ANPImportin-anuclear import of vRNP
NPImportin-a1 or 2 + Importin-betanuclear import of vRNP
NPTransportin-3nuclear import of vRNP (RNAi)
CSE1L, KPNB 1, NUP214,NUP153, TNPO3potentially nuclear import of vRNP (RNAi)
Importin-beta, Crm1, Nup98, Nup205potentially nuclear import of vRNP (RNAi)
Importin-5likely nuclear import of vRNP as delayed gene expression
PB1/2, NP, PA + NS1Importin-a4
PB1/2, NP, PAImportin-a7
RetroviridaeHIV-1VprhCG1, Nup54, Importin-alpha/betaNEBD if Vpr overexpressed; greatly improves docking of the PIC at the NPC by directly binding to nucleoporins; increased affinity of importin-alpha/beta to the PIC; Vpr at the NE promotes G2 arrest/apoptosis
IntegraseNup62chromatin associated Nup62 to aid genome integration
IntegraseImportin-7nuclear transport of pre-integration complex (PIC)
IntegraseNup98reduction of genome integration
IntegraseImportin-a1nuclear import of PIC
IntegraseImportin-a3nuclear import of PIC into T cell nuclei
Integrase, CATransportin-3nuclear import of PIC
CANup153, Nup155nuclear import of PIC
CANup358targeting of imported PIC and increased efficiency of integration in transcriptionally active areas
Matrix nuclear import of PIC into non-dividing cells
MLVCA proteinmasking of receptor binding siteinhibits nuclear transport of PIC
Hepadna-viridaeHBVcore proteinimportin alpha/beta, Nup153capsid entry to the nucleus and capsid arrest at Nup153 acts as a maturity checkpoint (coupled potentially to phosphorylation state)



Source: Viruses and the nuclear envelope,Thomas Hennig, Peter O’Hare, Curr. Opin. Cell Biol. June 2015; 34: 113.121

Matching UniProtKB/Swiss-Prot entries

593 entries grouped by protein (browse by keywords)

All proteins are shown (view only 428 complete proteome entries)

Capsid protein (Core antigen) (Core protein) (HBcAg) (p21.5)

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CAPSD_CLVKAfrican cassava mosaic virus (isolate West Kenyan 844) (ACMV) (Cassava latent ... reference strain

Capsid protein (Coat protein) (CP)

CAPSD_BFDVBeak and feather disease virus (BFDV) reference strain

Capsid protein

CAPSD_BGYMJBean golden yellow mosaic virus (isolate Puerto Rico-Japan) (BGYMV) reference strain

Capsid protein (Coat protein) (CP)

CAPSD_BEYDVBean yellow dwarf virus (BeYDV) reference strain

Capsid protein (Coat protein) (CP)

CAPSD_BCTVCBeet curly top virus (strain California/Logan) (BCTV) reference strain

Capsid protein (Coat protein) (CP)

CAPSD_PAVBPBovine parvovirus (isolate pAT153/1986) (BPV) reference strain

Capsid protein VP1 (Coat protein VP1)

CAPSD_CALCVCabbage leaf curl virus (isolate Jamaica) (CaLCuV) reference strain

Capsid protein (Coat protein) (CP)

CAPSD_CACVCanary circovirus (CaCV) reference strain

Probable capsid protein

CAPSD_CERVCarnation etched ring virus (CERV) reference strain

Probable capsid protein (CP) (Coat protein)

CAPSD_CAMVSCauliflower mosaic virus (strain Strasbourg) (CaMV) reference strain

Capsid protein (CP) (Coat protein)

CAPSD_CYLCVCestrum yellow leaf curling virus (CmYLCV) reference strain

Capsid protein (CP) (coat protein)

CAPSD_CAVC1Chicken anemia virus (isolate Germany Cuxhaven-1) (CAV) reference strain

Capsid protein (CA1) (Coat protein)

CAPSD_DHBVQDuck hepatitis B virus (isolate Shanghai/DHBVQCA34) (DHBV) reference strain

Capsid protein (Core antigen) (Core protein) (HBcAg)

CAPSD_FMVDFigwort mosaic virus (strain DxS) (FMV) reference strain

Probable capsid protein (CP) (Coat protein)

CAPSD_GSHVGround squirrel hepatitis virus (strain 27) (GSHV) reference strain

Capsid protein (Core antigen) (Core protein) (HBcAg)

CAPSD_HBVA5Hepatitis B virus genotype A1 subtype adw (isolate Philippines/pFDW294/1988) ... reference strain
CAPSD_HBVC4Hepatitis B virus genotype C subtype adr (isolate Korea/Kim/1989) (HBV-C) reference strain
CAPSD_HBVCJHepatitis B virus genotype C subtype ayr (isolate Human/Japan/Okamoto/-) (HBV-C) reference strain
CAPSD_HBVG3Hepatitis B virus genotype G (isolate IG29227/2000) (HBV-G) reference strain
CAPSD_PAVHVHuman parvovirus B19 (strain HV) (HPV B19) reference strain

Capsid protein VP1

CAPSD_MSVSMaize streak virus genotype A (isolate South Africa) (MSV) reference strain

Capsid protein (Coat protein) (CP)

CAPSD_MISV9Miscanthus streak virus (isolate 91) (MiSV) reference strain

Capsid protein (Coat protein) (CP)

CAPSD_MYMVVMungbean yellow mosaic virus (strain Vigna) (MYMV) reference strain

Capsid protein (Coat protein) (CP)

CAPSD_MUMIPMurine minute virus (strain MVM prototype) (MVM) (Murine minute virus (strain ... reference strain

Capsid protein VP1 (Coat protein VP1)

CAPSD_PHUVPepper huasteco yellow vein virus (PHYVV) (Pepper huasteco virus) reference strain

Capsid protein (Coat protein) (CP)

CAPSD_PCV1CPorcine circovirus 1 (isolate China) (PCV1) reference strain

Capsid protein

CAPSD_PYMVVPotato yellow mosaic virus (isolate Venezuela) (PYMV) reference strain

Capsid protein (Coat protein) (CP)

CAPSD_SOCMVSoybean chlorotic mottle virus reference strain

Capsid protein (CP) (Coat protein)

CAPSD_SLCVSquash leaf curl virus (SLCV) reference strain

Capsid protein (Coat protein) (CP)

CAPSD_SSVNSugarcane streak virus (isolate South Africa) (SSV) (Sugarcane streak virus ... reference strain

Capsid protein (Coat protein) (CP)

CAPSD_TLCVATomato leaf curl virus (strain Australia) (ToLCV) reference strain

Capsid protein (Coat protein) (CP)

CAPSD_TPCTVTomato pseudo-curly top virus (TPCTV) reference strain

Capsid protein (Coat protein) (CP)

CAPSD_TYLCCTomato yellow leaf curl China virus (TYLCCNV) reference strain

Capsid protein (Coat protein) (CP)

CAPSD_TYCSVTomato yellow leaf curl Sardinia virus (TYLCSV) reference strain

Capsid protein (Coat protein) (CP)

CAPSD_TYLCITomato yellow leaf curl virus (strain Israel) (TYLCV) reference strain

Capsid protein (Coat protein) (CP)

CAPSD_WDVSWheat dwarf virus (isolate Sweden) (WDV) reference strain

Capsid protein (Coat protein) (CP)

CAPSD_ABMVWAbutilon mosaic virus (isolate West India) (AbMV)

Capsid protein (Coat protein) (CP)

CAPSD_CLVNAfrican cassava mosaic virus (isolate Nigerian) (ACMV) (Cassava latent virus ...

Capsid protein (Coat protein) (CP)

CAPSD_ASHVArctic squirrel hepatitis virus (ASHV)

Capsid protein (Core antigen) (Core protein) (HBcAg)

CAPSD_BGYMVBean golden yellow mosaic virus (isolate Puerto Rico) (BGYMV) (Bean golden ...

Capsid protein (Coat protein) (CP)

CAPSD_PAVCCanine parvovirus type 2 (CPV-2)

Capsid protein VP2 (Coat protein VP2)

CAPSD_PAVCBCanine parvovirus type 2 (isolate Dog/United States/CPV-b/1978) (CPV-2)

Capsid protein VP1 (Coat protein VP1)

CAPSD_PAVCNCanine parvovirus type 2 (isolate Dog/United States/CPV-N/1978) (CPV-2)

Capsid protein VP1 (Coat protein VP1)

CAPSD_PAVC7Canine parvovirus type 2 (strain Dog/United States/780929/-) (CPV-2)

Capsid protein VP1 (Coat protein VP1)

CAPSD_PAVCDCanine parvovirustype 2 (isolate Dog/United States/CPV-d/1988) (CPV-2)

Capsid protein VP1 (Coat protein VP1)

CAPSD_CAMVECauliflower mosaic virus (strain BBC) (CaMV)

Capsid protein (CP) (Coat protein)

CAPSD_CAMVCCauliflower mosaic virus (strain CM-1841) (CaMV)

Capsid protein (CP) (Coat protein)

CAPSD_CAMVDCauliflower mosaic virus (strain D/H) (CaMV)

Capsid protein (CP) (Coat protein)

CAPSD_CAMVNCauliflower mosaic virus (strain NY8153) (CaMV)

Capsid protein (CP) (Coat protein)

CAPSD_CAVAUChicken anemia virus (isolate Australia) (CAV)

Capsid protein (CA1) (Coat protein)

CAPSD_CAVCAChicken anemia virus (isolate Australia/CAU269-7/2000) (CAV)

Capsid protein (CA1) (Coat protein)

CAPSD_CAV82Chicken anemia virus (isolate Japan 82-2) (CAV)

Capsid protein (CA1) (Coat protein)

CAPSD_CAV26Chicken anemia virus (isolate USA 26p4) (CAV)

Capsid protein (CA1) (Coat protein)

CAPSD_CAVCIChicken anemia virus (isolate USA CIA-1) (CAV)

Capsid protein (CA1) (Coat protein)

CAPSD_HBVCPChimpanzee hepatitis B virus (isolate United Kingdom/LSH/1988) (HBVcpz)

Capsid protein (Core antigen) (Core protein) (HBcAg)

CAPSD_CSMVChloris striate mosaic virus (CSMV)

Capsid protein (Coat protein) (CP)

CAPSD_HPBDBDuck hepatitis B virus (isolate brown Shanghai duck S5) (DHBV)

Capsid protein (Core antigen) (Core protein) (HBcAg)

CAPSD_HPBDWDuck hepatitis B virus (isolate white Shanghai duck S31) (DHBV)

Capsid protein (Core antigen) (Core protein) (HBcAg)

CAPSD_HPBDCDuck hepatitis B virus (strain China) (DHBV)

Capsid protein (Core antigen) (Core protein) (HBcAg)

CAPSD_DHBV3Duck hepatitis B virus (strain Germany/DHBV-3) (DHBV)

Capsid protein (Core antigen) (Core protein) (HBcAg)

CAPSD_DHBV1Duck hepatitis B virus (strain United States/DHBV-16) (DHBV)

Capsid protein (Core antigen) (Core protein) (HBcAg)

CAPSD_FPVFeline panleukopenia virus (FPV)

Capsid protein VP1 (Coat protein VP1)

CAPSD_FPV19Feline panleukopenia virus (strain 193) (FPV)

Capsid protein VP1 (Coat protein VP1)

CAPSD_HBVGBGibbon hepatitis B virus subtype ayw3q (isolate Hope) (HBVgbn)

Capsid protein (Core antigen) (Core protein) (HBcAg)

CAPSD_GOCVGoose circovirus (GoCV)

Probable capsid protein

CAPSD_HBVGOGorilla hepatitis B virus (isolate Cameroon/gor97) (HBVgor)

Capsid protein (Core antigen) (Core protein) (HBcAg)

CAPSD_PAVHHHamster parvovirus H1

Capsid protein VP1 (Coat protein VP1)

CAPSD_HBVA6Hepatitis B virus genotype A1 subtype adw2 (isolate South Africa/84/2001) ...
CAPSD_HBVA7Hepatitis B virus genotype A2 (isolate Japan/11D11HCCW/1998) (HBV-A)
CAPSD_HBVA2Hepatitis B virus genotype A2 subtype adw (isolate Japan/Nishioka/1983) (HBV-A)
CAPSD_HBVA4Hepatitis B virus genotype A2 subtype adw2 (isolate Germany/991/1990) (HBV-A)
CAPSD_HBVA3Hepatitis B virus genotype A2 subtype adw2 (strain Rutter 1979) (HBV-A)
CAPSD_HBVA9Hepatitis B virus genotype A3 (isolate Cameroon/CMR711/1994) (HBV-A)
CAPSD_HBVA8Hepatitis B virus genotype A3 (isolate Cameroon/CMR983/1994) (HBV-A)
CAPSD_HBVB4Hepatitis B virus genotype B/C subtype adw (isolate Okinawa/pODW282/1998) ...
CAPSD_HBVB8Hepatitis B virus genotype B1 (isolate Japan/Ry30/2002) (HBV-B)
CAPSD_HBVB7Hepatitis B virus genotype B1 (isolate Japan/Yamagata-2/1998) (HBV-B)
CAPSD_HBVB1Hepatitis B virus genotype B1 subtype adw (isolate Japan/pJDW233/1988) (HBV-B)
CAPSD_HBVB2Hepatitis B virus genotype B2 (isolate Indonesia/pIDW420/1988) (HBV-B)
CAPSD_HBVB3Hepatitis B virus genotype B2 (isolate Vietnam/9873/1997) (HBV-B)
CAPSD_HBVB6Hepatitis B virus genotype B2 subtype adw (isolate China/patient4/1996) (HBV-B)
CAPSD_HBVC0Hepatitis B virus genotype C (isolate Vietnam/3270/2000) (HBV-C)
CAPSD_HBVC5Hepatitis B virus genotype C subtype ad (isolate Japan/S-179/1988) (HBV-C)
CAPSD_HBVC8Hepatitis B virus genotype C subtype adr (isolate Japan/A4/1994) (HBV-C)
CAPSD_HBVC1Hepatitis B virus genotype C subtype adr (isolate Japan/Nishioka/1983) (HBV-C)
CAPSD_HBVC3Hepatitis B virus genotype C subtype adr (strain Japan/adr4/1983) (HBV-C)
CAPSD_HBVC2Hepatitis B virus genotype C subtype ar (isolate Japan/S-207/1988) (HBV-C)
CAPSD_HBVC9Hepatitis B virus genotype C subtype ayw (isolate Australia/AustRC/1992) (HBV-C)
CAPSD_HBVC7Hepatitis B virus genotype C subtype ayw (isolate China/Tibet127/2002) (HBV-C)
CAPSD_HBVD2Hepatitis B virus genotype D (isolate France/alpha1/1989) (HBV-D)
CAPSD_HBVD7Hepatitis B virus genotype D (isolate Germany/1-91/1991) (HBV-D)
CAPSD_HBVD1Hepatitis B virus genotype D subtype adw (isolate United Kingdom/adyw/1979) ...
CAPSD_HBVD5Hepatitis B virus genotype D subtype ayw (isolate Australia/AustKW/1991) (HBV-D)
CAPSD_HBVD3Hepatitis B virus genotype D subtype ayw (isolate France/Tiollais/1979) (HBV-D)
CAPSD_HBVD6Hepatitis B virus genotype D subtype ayw (isolate Italy/CI/1992) (HBV-D)
CAPSD_HBVD4Hepatitis B virus genotype D subtype ayw (isolate Japan/JYW796/1988) (HBV-D)
CAPSD_HBVF1Hepatitis B virus genotype F2 (isolate Brazil/w4B) (HBV-F)
CAPSD_HBVF6Hepatitis B virus genotype F2 subtype adw4q (isolate Senegal/9203) (HBV-F)
CAPSD_HBVG2Hepatitis B virus genotype G (isolate United States/USG17/2002) (HBV-G)
CAPSD_HBVG1Hepatitis B virus genotype G subtype adw2 (isolate United States/sf/1990) ...
CAPSD_HBVH3Hepatitis B virus genotype H subtype adw4 (isolate Nicaragua/2928Nic/1997) ...
CAPSD_HHBVHeron hepatitis B virus (HHBV)

Capsid protein (Core antigen) (Core protein) (HBcAg)

CAPSD_PAVHUHuman parvovirus B19 (isolate AU) (HPV B19)

Capsid protein VP1 (Coat protein VP1)

CAPSD_ICMVIndian cassava mosaic virus (ICMV)

Capsid protein (Coat protein) (CP)

CAPSD_MSVKMaize streak virus genotype A (isolate Kenya) (MSV)

Capsid protein (Coat protein) (CP)

CAPSD_MSVNMaize streak virus genotype A (isolate Nigeria) (MSV)

Capsid protein (Coat protein) (CP)

CAPSD_MSVTAMaize streak virus genotype B (isolate Tas) (MSV)

Capsid protein (Coat protein) (CP)

CAPSD_MSVSEMaize streak virus genotype C (isolate Set) (MSV)

Capsid protein (Coat protein) (CP)

CAPSD_MSVRAMaize streak virus genotype D (isolate Raw) (MSV)

Capsid protein (Coat protein) (CP)

CAPSD_MSVPAMaize streak virus genotype E (isolate Pat) (MSV)

Capsid protein (Coat protein) (CP)

CAPSD_MUMIMMurine minute virus (strain MVMi) (MVM) (Murine parvovirus)

Capsid protein VP1 (Coat protein VP1)

CAPSD_PASVKPanicum streak virus (isolate Kenya) (PanSV)

Capsid protein (Coat protein) (CP)

CAPSD_PAVL3Parvovirus LuIII

Capsid protein VP1 (Coat protein VP1)

CAPSD_PICVPigeon circovirus (PiCV) (Columbid circovirus)

Probable capsid protein

CAPSD_PCV2Porcine circovirus 2 (PCV2)

Capsid protein

CAPSD_PAVP9Porcine parvovirus (strain 90HS) (PPV)

Capsid protein VP1 (Coat protein VP1)

CAPSD_PAVPKPorcine parvovirus (strain Kresse) (PPV)

Capsid protein VP1 (Coat protein VP1)

CAPSD_PAVPNPorcine parvovirus (strain NADL-2) (PPV)

Capsid protein VP1 (Coat protein VP1)

CAPSD_TYDVATobacco yellow dwarf virus (strain Australia) (TYDV)

Capsid protein (Coat protein) (CP)

CAPSD_TGMVYTomato golden mosaic virus (strain Yellow vein) (TGMV)

Capsid protein (Coat protein) (CP)

CAPSD_TMOVTomato mottle virus (isolate Florida) (ToMoV)

Capsid protein (Coat protein) (CP)

CAPSD_TYCS1Tomato yellow leaf curl Sardinia virus (isolate Spain-1) (TYLCSV)

Capsid protein (Coat protein) (CP)

CAPSD_TYCS2Tomato yellow leaf curl Sardinia virus (isolate Spain-2) (TYLCSV)

Capsid protein (Coat protein) (CP)

CAPSD_WHV1Woodchuck hepatitis B virus (isolate 1) (WHV)

Capsid protein (Core antigen) (Core protein) (HBcAg)

CAPSD_WHV2Woodchuck hepatitis B virus (isolate 2) (WHV)

Capsid protein (Core antigen) (Core protein) (HBcAg)

CAPSD_WHV3Woodchuck hepatitis B virus (isolate 59) (WHV)

Capsid protein (Core antigen) (Core protein) (HBcAg)

CAPSD_WHV4Woodchuck hepatitis B virus (isolate 7) (WHV)

Capsid protein (Core antigen) (Core protein) (HBcAg)

CAPSD_WHV5Woodchuck hepatitis B virus (isolate 8) (WHV)

Capsid protein (Core antigen) (Core protein) (HBcAg)

CAPSD_WMHBVWoolly monkey hepatitis B virus (isolate Louisville) (WMHBV)

Capsid protein (Core antigen) (Core protein) (HBcAg)

Capsid vertex component 2

Select_all Deselect_all  
CVC2_ALHV1Alcelaphine herpesvirus 1 (strain C500) (AlHV-1) (Malignant catarrhal fever ... reference strain
CVC2_EBVA8Epstein-Barr virus (strain AG876) (HHV-4) (Human herpesvirus 4) reference strain
CVC2_EBVB9Epstein-Barr virus (strain B95-8) (HHV-4) (Human herpesvirus 4) reference strain
CVC2_EHV1BEquine herpesvirus 1 (strain Ab4p) (EHV-1) (Equine abortion virus) reference strain
CVC2_EHV2Equine herpesvirus 2 (strain 86/87) (EHV-2) reference strain
CVC2_GAHVMGallid herpesvirus 2 (strain Chicken/Md5/ATCC VR-987) (GaHV-2) (Marek's disease ... reference strain
CVC2_HCMVAHuman cytomegalovirus (strain AD169) (HHV-5) (Human herpesvirus 5) reference strain
CVC2_HCMVMHuman cytomegalovirus (strain Merlin) (HHV-5) (Human herpesvirus 5) reference strain
CVC2_HHV11Human herpesvirus 1 (strain 17) (HHV-1) (Human herpes simplex virus 1) reference strain
CVC2_HHV2HHuman herpesvirus 2 (strain HG52) (HHV-2) (Human herpes simplex virus 2) reference strain
CVC2_HHV6UHuman herpesvirus 6A (strain Uganda-1102) (HHV-6 variant A) (Human B ... reference strain
CVC2_HHV6ZHuman herpesvirus 6B (strain Z29) (HHV-6 variant B) (Human B lymphotropic virus) reference strain
CVC2_HHV7JHuman herpesvirus 7 (strain JI) (HHV-7) (Human T lymphotropic virus) reference strain
CVC2_HHV8PHuman herpesvirus 8 type P (isolate GK18) (HHV-8) (Kaposi's sarcoma-associated ... reference strain
CVC2_PSHV1Psittacid herpesvirus 1 (isolate Amazon parrot/-/97-0001/1997) (PsHV-1) ... reference strain
CVC2_SHV21Saimiriine herpesvirus 2 (strain 11) (SaHV-2) (Herpesvirus saimiri) reference strain
CVC2_VZVDVaricella-zoster virus (strain Dumas) (HHV-3) (Human herpesvirus 3) reference strain
CVC2_ELHVKElephantid herpesvirus 1 (isolate Asian elephant/Berlin/Kiba/1998) (EIHV-1) ...
CVC2_EBVGEpstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4)
CVC2_EHV1VEquine herpesvirus 1 (strain V592) (EHV-1) (Equine abortion virus)
CVC2_ILTVTInfectious laryngotracheitis virus (strain Thorne V882) (ILTV) (Gallid ...

Large delta antigen (L-HDAg) (p27)

Select_all Deselect_all  
LHDAG_HDVD3Hepatitis delta virus genotype I (isolate D380) (HDV) reference strain
LHDAG_HDVP1Hepatitis delta virus genotype III (isolate Peru-1) (HDV) reference strain
LHDAG_HDVAMHepatitis delta virus genotype I (isolate American) (HDV)
LHDAG_HDVITHepatitis delta virus genotype I (isolate Italian) (HDV)
LHDAG_HDVM1Hepatitis delta virus genotype I (isolate Japanese M-1) (HDV)
LHDAG_HDVM2Hepatitis delta virus genotype I (isolate Japanese M-2) (HDV)
LHDAG_HDVS2Hepatitis delta virus genotype I (isolate Japanese S-2) (HDV)
LHDAG_HDVL1Hepatitis delta virus genotype I (isolate Lebanon-1) (HDV)
LHDAG_HDVNAHepatitis delta virus genotype I (isolate Nauru) (HDV)
LHDAG_HDVU2Hepatitis delta virus genotype I (isolate US-2) (HDV)
LHDAG_HDVWOHepatitis delta virus genotype I (isolate Woodchuck) (HDV)
LHDAG_HDV83Hepatitis delta virus genotype II (isolate 7/18/83) (HDV)
LHDAG_HDVS1Hepatitis delta virus genotype II (isolate Japanese S-1) (HDV)
LHDAG_HDVTWHepatitis delta virus genotype II (isolate TW2476) (HDV)
LHDAG_HDVV2Hepatitis delta virus genotype III (isolate VnzD8349) (HDV)
LHDAG_HDVV3Hepatitis delta virus genotype III (isolate VnzD8375) (HDV)
LHDAG_HDVV1Hepatitis delta virus genotype III (isolate VnzD8624) (HDV)

Nucleoprotein (Nucleocapsid protein) (Protein N)

Select_all Deselect_all  
NCAP_BDVVBorna disease virus (strain V) (BDV) reference strain

Nucleoprotein (N protein) (Nucleocapsid protein) (p38) (p40)

NCAP_ISAV8Infectious salmon anemia virus (isolate Atlantic salmon/Norway/810/9/99) (ISAV) reference strain
NCAP_I49A1Influenza A virus (strain A/Duck/Germany/1949 H10N7) reference strain
NCAP_I96A0Influenza A virus (strain A/Goose/Guangdong/1/1996 H5N1 genotype Gs/Gd) reference strain
NCAP_I34A1Influenza A virus (strain A/Puerto Rico/8/1934 H1N1) reference strain
NCAP_I80A2Influenza A virus (strain A/Seal/Massachusetts/1/1980 H7N7) reference strain
NCAP_I72A5Influenza A virus (strain A/Shearwater/Australia/1972 H6N5) reference strain
NCAP_I80A8Influenza A virus (strain A/Turkey/Minnesota/833/1980 H4N2) reference strain
NCAP_INBLEInfluenza B virus (strain B/Lee/1940) reference strain
NCAP_INCAAInfluenza C virus (strain C/Ann Arbor/1/1950) reference strain
NCAP_THOGVThogoto virus (isolate SiAr 126) (Tho) reference strain
NCAP_DHVI1Dhori virus (strain Indian/1313/61) (Dho)
NCAP_I76A0Influenza A virus (strain A/Anas acuta/Primorje/695/1976 H2N3)
NCAP_I60A0Influenza A virus (strain A/Ann Arbor/6/1960 H2N2)
NCAP_I89A0Influenza A virus (strain A/Beijing/337/1989 H3N2)
NCAP_I89A1Influenza A virus (strain A/Beijing/352/1989 H3N2)
NCAP_I89A2Influenza A virus (strain A/Beijing/353/1989 H3N2)
NCAP_I75A0Influenza A virus (strain A/Beijing/39/1975 H3N2)
NCAP_I77AAInfluenza A virus (strain A/Brazil/11/1978 H1N1)
NCAP_I18A0Influenza A virus (strain A/Brevig Mission/1/1918 H1N1) (Influenza A virus ...
NCAP_I77AGInfluenza A virus (strain A/Budgerigar/Hokkaido/1/1977 H4N6)
NCAP_I78A6Influenza A virus (strain A/California/10/1978 H1N1)
NCAP_I49A0Influenza A virus (strain A/Chicken/Germany/n/1949 H10N7)
NCAP_I02A2Influenza A virus (strain A/Chicken/Hong Kong/31.2/2002 H5N1 genotype X1)
NCAP_I02A3Influenza A virus (strain A/Chicken/Hong Kong/37.4/2002 H5N1 genotype X2)
NCAP_I01A3Influenza A virus (strain A/Chicken/Hong Kong/715.5/2001 H5N1 genotype E)

Nucleoprotein

NCAP_I02A5Influenza A virus (strain A/Chicken/Hong Kong/96.1/2002 H5N1 genotype Y)

Nucleoprotein

NCAP_I01A2Influenza A virus (strain A/Chicken/Hong Kong/FY150/2001 H5N1 genotype D)
NCAP_I02A6Influenza A virus (strain A/Chicken/Hong Kong/YU22/2002 H5N1 genotype Z)

Nucleoprotein

NCAP_I01A1Influenza A virus (strain A/Chicken/Hong Kong/YU562/2001 H5N1 genotype B)
NCAP_I83A5Influenza A virus (strain A/Chicken/Pennsylvania/1/1983 H5N2)
NCAP_I59A0Influenza A virus (strain A/Chicken/Scotland/1959 H5N1)
NCAP_I03A1Influenza A virus (strain A/Chicken/Shantou/4231/2003 H5N1 genotype V)

Nucleoprotein

NCAP_I83A1Influenza A virus (strain A/Chile/1/1983 H1N1)
NCAP_I96A3Influenza A virus (strain A/China:Nanchang/11/1996 H1N1)
NCAP_I80A1Influenza A virus (strain A/Duck/Australia/749/1980 H1N1)
NCAP_I77A3Influenza A virus (strain A/Duck/Bavaria/2/1977 H1N1)
NCAP_I78A5Influenza A virus (strain A/Duck/Beijing/1/1978 H3N6)
NCAP_I56A1Influenza A virus (strain A/Duck/Czechoslovakia/1956 H4N6)
NCAP_I56A2Influenza A virus (strain A/Duck/England/1/1956 H11N6)
NCAP_I62A0Influenza A virus (strain A/Duck/England/1/1962 H4N6)
NCAP_I80A6Influenza A virus (strain A/Duck/Hokkaido/8/1980 H3N8)
NCAP_I00A0Influenza A virus (strain A/Duck/Hong Kong/2986.1/2000 H5N1 genotype C)
NCAP_I75A2Influenza A virus (strain A/Duck/Hong Kong/7/1975 H3N2)
NCAP_I53A0Influenza A virus (strain A/Duck/Manitoba/1/1953 H10N7)
NCAP_I74A2Influenza A virus (strain A/Duck/Memphis/928/1974 H3N8)
NCAP_I76AKInfluenza A virus (strain A/Duck/New Zealand/31/1976 H4N6)
NCAP_I69A1Influenza A virus (strain A/Duck/Pennsylvania/1/1969 H6N1)
NCAP_I60A2Influenza A virus (strain A/Duck/Ukraine/2/1960 H11N8)
NCAP_I55A0Influenza A virus (strain A/England/19/1955 H1N1)
NCAP_I89A7Influenza A virus (strain A/Equine/Jillin/1/1989 H3N8)
NCAP_I86A2Influenza A virus (strain A/Equine/Kentucky/2/1986 H3N8)
NCAP_I73A4Influenza A virus (strain A/Equine/London/1416/1973 H7N7)
NCAP_I63A2Influenza A virus (strain A/Equine/Miami/1/1963 H3N8)
NCAP_I56A3Influenza A virus (strain A/Equine/Prague/1/1956 H7N7)
NCAP_I85A5Influenza A virus (strain A/Equine/Santiago/1/1985 H3N8)
NCAP_I86A3Influenza A virus (strain A/Equine/Tennessee/5/1986 H3N8)
NCAP_I47A0Influenza A virus (strain A/Fort Monmouth/1/1947 H1N1)
NCAP_I50A0Influenza A virus (strain A/Fort Warren/1/1950 H1N1)
NCAP_I27A0Influenza A virus (strain A/Fowl plague virus/Dobson/'Dutch'/1927 H7N7)
NCAP_I34A0Influenza A virus (strain A/Fowl plague virus/Rostock/8/1934 H7N1)
NCAP_I79A7Influenza A virus (strain A/Grey teal/Australia/2/1979 H4N4)
NCAP_I77A5Influenza A virus (strain A/Guangdong/38/1977 H3N2)
NCAP_I89A3Influenza A virus (strain A/Guangdong/39/1989 H3N2)
NCAP_I87A2Influenza A virus (strain A/Guangdong/9/1987 H3N2)
NCAP_I02A1Influenza A virus (strain A/Guinea fowl/Hong Kong/38/2002 H5N1 genotype X0)
NCAP_I84A4Influenza A virus (strain A/Gull/Astrakhan/227/1984 H13N6)
NCAP_I79A8Influenza A virus (strain A/Gull/Maryland/1815/1979 H13N6)
NCAP_I78AFInfluenza A virus (strain A/Gull/Maryland/1824/1978 H13N6)
NCAP_I77AEInfluenza A virus (strain A/Gull/Maryland/5/1977 H11N9)
NCAP_I77AFInfluenza A virus (strain A/Gull/Maryland/704/1977 H13N6)
NCAP_I80ACInfluenza A virus (strain A/Gull/Massachusetts/26/1980 H13N6)
NCAP_I80ADInfluenza A virus (strain A/Gull/Minnesota/945/1980 H13N6)
NCAP_I36A0Influenza A virus (strain A/Henry/1936 H1N1)
NCAP_I40A0Influenza A virus (strain A/Hickox/1940 H1N1)
NCAP_I68A4Influenza A virus (strain A/Hong Kong/1/1968 H3N2)
NCAP_I97A1Influenza A virus (strain A/Hong Kong/156/1997 H5N1 genotype Gs/Gd)
NCAP_I03A0Influenza A virus (strain A/Hong Kong/212/2003 H5N1 genotype Z+)
NCAP_I83A8Influenza A virus (strain A/Hong Kong/5/1983 H3N2)
NCAP_I80AAInfluenza A virus (strain A/India/6263/1980 H1N1)
NCAP_I79A4Influenza A virus (strain A/Kiev/59/1979 H1N1)
NCAP_I93A0Influenza A virus (strain A/Kitakyushu/159/1993 H3N2)
NCAP_I54A0Influenza A virus (strain A/Leningrad/1/1954 H1N1)
NCAP_I54A2Influenza A virus (strain A/Malaysia:Malaya/302/1954 H1N1)
NCAP_I82A0Influenza A virus (strain A/Mallard/Astrakhan/244/1982 H14N6) (Influenza A ...
NCAP_I82A1Influenza A virus (strain A/Mallard/Astrakhan/263/1982 H14N5) (Influenza A ...
NCAP_I78A3Influenza A virus (strain A/Mallard/New York/6750/1978 H2N2)
NCAP_I71A1Influenza A virus (strain A/Memphis/1/1971 H3N2)
NCAP_I73A3Influenza A virus (strain A/Memphis/1/1973 H3N2)
NCAP_I72A4Influenza A virus (strain A/Memphis/101/1972 H3N2)
NCAP_I76A6Influenza A virus (strain A/Memphis/110/1976 H3N2)
NCAP_I85A0Influenza A virus (strain A/Memphis/14/1985 H3N2)
NCAP_I78A8Influenza A virus (strain A/Memphis/18/1978 H3N2)
NCAP_I78A7Influenza A virus (strain A/Memphis/2/1978 H3N2)
NCAP_I88A2Influenza A virus (strain A/Memphis/3/1988 H3N2)
NCAP_I73A2Influenza A virus (strain A/Memphis/4/1973 H3N2)
NCAP_I80A4Influenza A virus (strain A/Memphis/4/1980 H3N2)
NCAP_I80A3Influenza A virus (strain A/Memphis/5/1980 H3N2)
NCAP_I86A1Influenza A virus (strain A/Memphis/6/1986 H3N2)
NCAP_I88A3Influenza A virus (strain A/Memphis/8/1988 H3N2)
NCAP_I84A3Influenza A virus (strain A/Mink/Sweden/1984 H10N4)
NCAP_I76A7Influenza A virus (strain A/New Jersey/8/1976 H1N1)
NCAP_I00A1Influenza A virus (strain A/New Zealand:South Canterbury/35/2000 H1N1)
NCAP_I68A6Influenza A virus (strain A/Northern Territory/60/1968 H3N2) (Influenza A virus ...
NCAP_I83A2Influenza A virus (strain A/Ohio/4/1983 H1N1)
NCAP_I73A0Influenza A virus (strain A/Parrot/Ulster/1973 H7N1)
NCAP_I73A5Influenza A virus (strain A/Port Chalmers/1/1973 H3N2)
NCAP_I85A7Influenza A virus (strain A/Ruddy Turnstone/New Jersey/47/1985 H4N6)
NCAP_I06A0Influenza A virus (strain A/Russia:St.Petersburg/8/2006 H1N1)
NCAP_I87A0Influenza A virus (strain A/Shanghai/11/1987 H3N2)
NCAP_I89A4Influenza A virus (strain A/Shanghai/16/1989 H3N2)
NCAP_I80A0Influenza A virus (strain A/Shanghai/31/1980 H3N2)
NCAP_I90A0Influenza A virus (strain A/Shanghai/6/1990 H3N2)
NCAP_I01A0Influenza A virus (strain A/Silky Chicken/Hong Kong/SF189/2001 H5N1 genotype A)

Nucleoprotein

NCAP_I02A4Influenza A virus (strain A/Silky Chicken/Hong Kong/YU100/2002 H5N1 genotype X3)
NCAP_I57A5Influenza A virus (strain A/Singapore/1/1957 H2N2)
NCAP_I37A0Influenza A virus (strain A/Swine/29/1937 H1N1)
NCAP_I49A2Influenza A virus (strain A/Swine/41/1949 H1N1)
NCAP_I35A1Influenza A virus (strain A/Swine/Cambridge/1/1935 H1N1)
NCAP_I77A4Influenza A virus (strain A/Swine/Colorado/1/1977 H3N2)
NCAP_I83A0Influenza A virus (strain A/Swine/Dandong/9/1983 H3N2)
NCAP_I81A0Influenza A virus (strain A/Swine/Germany/2/1981 H1N1)
NCAP_I82A4Influenza A virus (strain A/Swine/Hong Kong/126/1982 H3N2)
NCAP_I82A7Influenza A virus (strain A/Swine/Hong Kong/127/1982 H3N2)
NCAP_I76AAInfluenza A virus (strain A/Swine/Hong Kong/6/1976 H3N2)
NCAP_I30A0Influenza A virus (strain A/Swine/Iowa/15/1930 H1N1)
NCAP_I88A5Influenza A virus (strain A/Swine/Iowa/17672/1988 H1N1)
NCAP_I46A1Influenza A virus (strain A/Swine/Iowa/1946 H1N1)
NCAP_I76AFInfluenza A virus (strain A/Swine/Iowa/1976/1931 H1N1)
NCAP_I81A1Influenza A virus (strain A/Swine/Italy/141/1981 H1N1)
NCAP_I79A5Influenza A virus (strain A/Swine/Italy/2/1979 H1N1)
NCAP_I76AGInfluenza A virus (strain A/Swine/Italy/437/1976 H1N1)
NCAP_I89A6Influenza A virus (strain A/Swine/Italy/839/1989 H1N1)
NCAP_I42A0Influenza A virus (strain A/Swine/Jamesburg/1942 H1N1)
NCAP_I54A1Influenza A virus (strain A/Swine/May/1954 H1N1)
NCAP_I85A4Influenza A virus (strain A/Swine/Netherlands/12/1985 H1N1)
NCAP_I35A2Influenza A virus (strain A/Swine/Ohio/23/1935 H1N1)
NCAP_I81A4Influenza A virus (strain A/Swine/Ontario/2/1981 H1N1)
NCAP_I77ACInfluenza A virus (strain A/Swine/Tennessee/24/1977 H1N1)
NCAP_I57A7Influenza A virus (strain A/Swine/Wisconsin/1/1957 H1N1)
NCAP_I61A1Influenza A virus (strain A/Swine/Wisconsin/1/1961 H1N1)
NCAP_I67A2Influenza A virus (strain A/Swine/Wisconsin/1/1967 H1N1)
NCAP_I02A7Influenza A virus (strain A/Teal/China/2978.1/2002 H5N1 genotype W)

Nucleoprotein

NCAP_I80A5Influenza A virus (strain A/Teal/Iceland/29/1980 H7N7)
NCAP_I61A0Influenza A virus (strain A/Tern/South Africa/1961 H5N3)
NCAP_I72A6Influenza A virus (strain A/Tern/Turkmenia/18/1972 H3N3)
NCAP_I77AHInfluenza A virus (strain A/Texas/1/1977 H3N2)
NCAP_I83A4Influenza A virus (strain A/Turkey/Ireland/1378/1983 H5N8)
NCAP_I81A3Influenza A virus (strain A/Turkey/Minnesota/1661/1981 H1N1)
NCAP_I68A3Influenza A virus (strain A/Turkey/Ontario/6118/1968 H8N4)
NCAP_I66A0Influenza A virus (strain A/Turkey/Ontario/7732/1966 H5N9)
NCAP_I66A1Influenza A virus (strain A/Turkey/Wisconsin/1/1966 H9N2)
NCAP_I72A2Influenza A virus (strain A/Udorn/307/1972 H3N2)
NCAP_I51A0Influenza A virus (strain A/USA:Albany/12/1951 H1N1)
NCAP_I45A0Influenza A virus (strain A/USA:Huston/AA/1945 H1N1)
NCAP_I43A0Influenza A virus (strain A/USA:Iowa/1943 H1N1)
NCAP_I96A2Influenza A virus (strain A/USA:Memphis/10/1996 H1N1)
NCAP_I35A3Influenza A virus (strain A/USA:Phila/1935 H1N1)
NCAP_I07A0Influenza A virus (strain A/USA:Texas/UR06-0195/2007 H1N1)

Nucleocapsid protein

NCAP_I77ABInfluenza A virus (strain A/USSR/90/1977 H1N1)
NCAP_I68A2Influenza A virus (strain A/Victoria/5/1968 H2N2)
NCAP_I84A2Influenza A virus (strain A/Whale/Maine/328/1984 H13N2)
NCAP_I76AEInfluenza A virus (strain A/Whale/Pacific ocean/19/1976 H1N3)
NCAP_I33A0Influenza A virus (strain A/Wilson-Smith/1933 H1N1) (Influenza A virus (strain ...
NCAP_I88A7Influenza A virus (strain A/Wisconsin/3523/1988 H1N1)
NCAP_INBACInfluenza B virus (strain B/Ann Arbor/1/1966 [cold-adapted])
NCAP_INBADInfluenza B virus (strain B/Ann Arbor/1/1966 [wild-type])
NCAP_INBAAInfluenza B virus (strain B/Ann Arbor/1/1986)
NCAP_INBP9Influenza B virus (strain B/Panama/45/1990)
NCAP_INBSIInfluenza B virus (strain B/Singapore/222/1979)
NCAP_INCCAInfluenza C virus (strain C/California/1978)
NCAP_INCJHInfluenza C virus (strain C/Johannesburg/1/1966)

Pre-histone-like nucleoprotein (Pre-core protein VII) (pVII)

Select_all Deselect_all  
NP_ADEG1Fowl adenovirus A serotype 1 (strain CELO / Phelps) (FAdV-1) (Avian adenovirus ... reference strain
NP_ADE02Human adenovirus C serotype 2 (HAdV-2) (Human adenovirus 2) reference strain
NP_ADEB2Bovine adenovirus 2 (BAdV-2) (Mastadenovirus bos2)
NP_ADECCCanine adenovirus serotype 1 (strain CLL) (CAdV-1) (Canine adenovirus 1 (strain ...
NP_ADECRCanine adenovirus serotype 1 (strain RI261) (CAdV-1) (Canine adenovirus 1 ...
NP_ADECUCanine adenovirus serotype 1 (strain Utrecht) (CAdV-1) (Canine adenovirus 1 ...
NP_ADECTCanine adenovirus serotype 2 (strain Toronto A 26-61) (CAdV-2) (Canine ...
NP_ADE05Human adenovirus C serotype 5 (HAdV-5) (Human adenovirus 5)
NP_ADE40Human adenovirus F serotype 40 (HAdV-40) (Human adenovirus 40)
NP_ADEM1Murine adenovirus A serotype 1 (MAdV-1) (Murine adenovirus 1)
NP_ADES1Snake adenovirus serotype 1 (SnAdV-1)

Gag-Pol polyprotein (Pr160Gag-Pol)

Select_all Deselect_all  
POL_COYMVCommelina yellow mottle virus (CoYMV) reference strain

Polyprotein P3

POL_FFVFeline foamy virus (FFV) (Feline syncytial virus) reference strain

Pro-Pol polyprotein (Pr125Pol)

POL_HV1MAHuman immunodeficiency virus type 1 group M subtype A (isolate MAL) (HIV-1) reference strain
POL_HV1B1Human immunodeficiency virus type 1 group M subtype B (isolate BH10) (HIV-1) reference strain

pdb 1A9M  1AJV  1AJX  1AXA  1BQM  1BQN  1D4H  1D4I  1D4J  1DLO  1DW6  1EBK  1EBW  1EBY  1EBZ  1EC0  1EC1  1EC2  1EC3  1EET  1G35  1GNM  1GNN  1GNO  1HAR  1HBV  1HEF  1HEG  1HIH  1HMV  1HNI  1HNV  1HOS  1HPS  1HPZ  1HQE  1HQU  1HRH  1HTE  1HTF  1HTG  1HVI  1HVK  1HVP  1HVU  1HYS  1IKV  1IKW  1IKX  1IKY  1J5O  1KJH  1MER  1MES  1MET  1MEU  1N5Y  1N6Q  1NPA  1NPV  1NPW  1QE1  1QMC  1R0A  1RDH  1RTD  1RVL  1RVM  1RVN  1RVO  1RVP  1RVQ  1RVR  1S6P  1S6Q  1S9E  1S9G  1SBG  1SUQ  1SV5  1T03  1T05  1T7K  1TV6  1TVR  1UWB  1W5V  1W5W  1W5X  1W5Y  1YT9  1ZP8  1ZPA  1ZSF  1ZSR  2AQU  2B5J  2B6A  2BAN  2BBB  2BE2  2EXF  2G69  2HB3  2HMI  2HNZ  2HS1  2HS2  2I4D  2I4U  2I4V  2I4W  2I4X  2I5J  2IAJ  2IC3  2IDW  2IEO  2JZW  2L45  2L46  2L4L  2UXZ  2UY0  2VG5  2VG6  2VG7  2X4U  2YKM  2YKN  2ZD1  2ZE2  3AVI  3BGR  3DLK  3GGA  3GGV  3GGX  3HVT  3IG1  3IRX  3IS9  3ISN  3ITH  3JSM  3JYT  3K2P  3K4V  3KLE  3KLF  3KLG  3KLH  3KLI  3NDT  3NU3  3NU4  3NU5  3NU6  3NU9  3NUJ  3NUO  3OK9  3PSU  3QAA  3QLH  3QO9  3TKG  3TKW  3TL9  3TLH  3V4I  3V6D  3V81  3ZPS  3ZPT  3ZPU  4COE  4CP7  4CPQ  4CPR  4CPS  4CPT  4CPU  4CPW  4CPX  4DG1  4G1Q  4G8G  4G8I  4G9D  4G9F  4H4M  4H4O  4I2P  4I2Q  4ICL  4ID5  4IDK  4IFV  4IFY  4IG0  4IG3  4KFB  4KKO  4KO0  4LSL  4LSN  4MFB  4O44  4O4G  4OJR  4PQU  4PUO  4PWD  4Q0B  4QAG  4R5P  4RW4  4RW6  4RW7  4RW8  4RW9  4U8W  4WE1  4YE3  4YHQ  4ZIP  4ZLS  5AGZ  5AH6  5AH7  5AH8  5AH9  5AHA  5AHB  5AHC  5BRY  5BS4  5C24  5C25  5C42  5CYM  5CYQ  5D3G  5FDL  5HBM  5HLF  5HP1  5HRO  5I3U  5I42  5J1E  5JFP  5JFU  5JG1  5TEP  5TER 

POL_HV1BRHuman immunodeficiency virus type 1 group M subtype B (isolate BRU/LAI) (HIV-1) reference strain
POL_HV1H2Human immunodeficiency virus type 1 group M subtype B (isolate HXB2) (HIV-1) reference strain
POL_HV193Human immunodeficiency virus type 1 group M subtype F1 (isolate 93BR020) (HIV-1) reference strain
POL_HV1VIHuman immunodeficiency virus type 1 group M subtype F1 (isolate VI850) (HIV-1) reference strain
POL_HV1ANHuman immunodeficiency virus type 1 group O (isolate ANT70) (HIV-1) reference strain
POL_HV1MVHuman immunodeficiency virus type 1 group O (isolate MVP5180) (HIV-1) reference strain
POL_HV2BEHuman immunodeficiency virus type 2 subtype A (isolate BEN) (HIV-2) reference strain
POL_FOAMVHuman spumaretrovirus (SFVcpz(hu)) (Human foamy virus) reference strain

Pro-Pol polyprotein (Pr125Pol)

POL_RTBVPRice tungro bacilliform virus (isolate Philippines) (RTBV) reference strain

Polyprotein P3 (P194 protein)

POL_SFVCPSimian foamy virus (isolate chimpanzee) (SFVcpz) reference strain

Pro-Pol polyprotein (Pr125Pol)

POL_SFV1Simian foamy virus type 1 (SFVmac) (SFV-1) reference strain

Pro-Pol polyprotein (Pr125Pol)

POL_SIVEKSimian immunodeficiency virus (isolate EK505) (SIV-cpz) (Chimpanzee ... reference strain
POL_SIVMBSimian immunodeficiency virus (isolate MB66) (SIV-cpz) (Chimpanzee ... reference strain
POL_SIVTNSimian immunodeficiency virus (isolate TAN1) (SIV-cpz) (Chimpanzee ... reference strain
POL_HV1U4Human immunodeficiency virus type 1 group M subtype A (isolate U455) (HIV-1)
POL_HV1A2Human immunodeficiency virus type 1 group M subtype B (isolate ARV2/SF2) (HIV-1)
POL_HV1B5Human immunodeficiency virus type 1 group M subtype B (isolate BH5) (HIV-1)
POL_HV1JRHuman immunodeficiency virus type 1 group M subtype B (isolate JRCSF) (HIV-1)
POL_HV1LWHuman immunodeficiency virus type 1 group M subtype B (isolate LW123) (HIV-1)
POL_HV1MNHuman immunodeficiency virus type 1 group M subtype B (isolate MN) (HIV-1)
POL_HV1N5Human immunodeficiency virus type 1 group M subtype B (isolate NY5) (HIV-1)
POL_HV1OYHuman immunodeficiency virus type 1 group M subtype B (isolate OYI) (HIV-1)
POL_HV1RHHuman immunodeficiency virus type 1 group M subtype B (isolate RF/HAT3) (HIV-1)
POL_HV1Y2Human immunodeficiency virus type 1 group M subtype B (isolate YU-2) (HIV-1)
POL_HV1B9Human immunodeficiency virus type 1 group M subtype B (strain 89.6) (HIV-1)
POL_HV192Human immunodeficiency virus type 1 group M subtype C (isolate 92BR025) (HIV-1)
POL_HV1ETHuman immunodeficiency virus type 1 group M subtype C (isolate ETH2220) (HIV-1)
POL_HV1ELHuman immunodeficiency virus type 1 group M subtype D (isolate ELI) (HIV-1)
POL_HV1NDHuman immunodeficiency virus type 1 group M subtype D (isolate NDK) (HIV-1)
POL_HV1Z2Human immunodeficiency virus type 1 group M subtype D (isolate Z2/CDC-Z34) ...
POL_HV1MPHuman immunodeficiency virus type 1 group M subtype F2 (isolate MP255) (HIV-1)
POL_HV1M2Human immunodeficiency virus type 1 group M subtype F2 (isolate MP257) (HIV-1)
POL_HV19NHuman immunodeficiency virus type 1 group M subtype G (isolate 92NG083) (HIV-1)
POL_HV1SEHuman immunodeficiency virus type 1 group M subtype G (isolate SE6165) (HIV-1)
POL_HV190Human immunodeficiency virus type 1 group M subtype H (isolate 90CF056) (HIV-1)
POL_HV1V9Human immunodeficiency virus type 1 group M subtype H (isolate VI991) (HIV-1)
POL_HV1S9Human immunodeficiency virus type 1 group M subtype J (isolate SE9173) (HIV-1)
POL_HV1S2Human immunodeficiency virus type 1 group M subtype J (isolate SE9280) (HIV-1)
POL_HV196Human immunodeficiency virus type 1 group M subtype K (isolate 96CM-MP535) ...
POL_HV197Human immunodeficiency virus type 1 group M subtype K (isolate 97ZR-EQTB11) ...
POL_HV1YBHuman immunodeficiency virus type 1 group N (isolate YBF106) (HIV-1)
POL_HV1YFHuman immunodeficiency virus type 1 group N (isolate YBF30) (HIV-1)
POL_HV2CAHuman immunodeficiency virus type 2 subtype A (isolate CAM2) (HIV-2)
POL_HV2D1Human immunodeficiency virus type 2 subtype A (isolate D194) (HIV-2)
POL_HV2G1Human immunodeficiency virus type 2 subtype A (isolate Ghana-1) (HIV-2)
POL_HV2KRHuman immunodeficiency virus type 2 subtype A (isolate KR) (HIV-2)
POL_HV2NZHuman immunodeficiency virus type 2 subtype A (isolate NIH-Z) (HIV-2)
POL_HV2ROHuman immunodeficiency virus type 2 subtype A (isolate ROD) (HIV-2)
POL_HV2SBHuman immunodeficiency virus type 2 subtype A (isolate SBLISY) (HIV-2)
POL_HV2STHuman immunodeficiency virus type 2 subtype A (isolate ST) (HIV-2)
POL_HV2D2Human immunodeficiency virus type 2 subtype B (isolate D205) (HIV-2)
POL_HV2EHHuman immunodeficiency virus type 2 subtype B (isolate EHO) (HIV-2)
POL_HV2UCHuman immunodeficiency virus type 2 subtype B (isolate UC1) (HIV-2)
POL_SFV3LSimian foamy virus type 3 (strain LK3) (SFVagm) (SFV-3)

Pro-Pol polyprotein (Pr125Pol)

POL_SIVCZSimian immunodeficiency virus (isolate CPZ GAB1) (SIV-cpz) (Chimpanzee ...
POL_SIVS4Simian immunodeficiency virus (isolate F236/smH4) (SIV-sm) (Simian ...
POL_SIVGBSimian immunodeficiency virus (isolate GB1) (SIV-mnd) (Simian immunodeficiency ...
POL_SIVMKSimian immunodeficiency virus (isolate K6W) (SIV-mac) (Simian immunodeficiency ...
POL_SIVM1Simian immunodeficiency virus (isolate Mm142-83) (SIV-mac) (Simian ...
POL_SIVSPSimian immunodeficiency virus (isolate PBj14/BCL-3) (SIV-sm) (Simian ...
POL_SIVG1Simian immunodeficiency virus agm.grivet (isolate AGM gr-1) (SIV-agm.gri) ...
POL_SIVVTSimian immunodeficiency virus agm.vervet (isolate AGM TYO-1) (SIV-agm.ver) ...
POL_SIVV1Simian immunodeficiency virus agm.vervet (isolate AGM155) (SIV-agm.ver) (Simian ...
POL_SIVVGSimian immunodeficiency virus agm.vervet (isolate AGM3) (SIV-agm.ver) (Simian ...

Small delta antigen (S-HDAg) (p24)

Select_all Deselect_all  
SHDAG_HDVD3Hepatitis delta virus genotype I (isolate D380) (HDV) reference strain
SHDAG_HDVP1Hepatitis delta virus genotype III (isolate Peru-1) (HDV) reference strain
SHDAG_HDVAMHepatitis delta virus genotype I (isolate American) (HDV)
SHDAG_HDVITHepatitis delta virus genotype I (isolate Italian) (HDV)
SHDAG_HDVM1Hepatitis delta virus genotype I (isolate Japanese M-1) (HDV)
SHDAG_HDVM2Hepatitis delta virus genotype I (isolate Japanese M-2) (HDV)
SHDAG_HDVS2Hepatitis delta virus genotype I (isolate Japanese S-2) (HDV)
SHDAG_HDVL1Hepatitis delta virus genotype I (isolate Lebanon-1) (HDV)
SHDAG_HDVNAHepatitis delta virus genotype I (isolate Nauru) (HDV)
SHDAG_HDVU2Hepatitis delta virus genotype I (isolate US-2) (HDV)
SHDAG_HDVWOHepatitis delta virus genotype I (isolate Woodchuck) (HDV)
SHDAG_HDV83Hepatitis delta virus genotype II (isolate 7/18/83) (HDV)
SHDAG_HDVS1Hepatitis delta virus genotype II (isolate Japanese S-1) (HDV)
SHDAG_HDVTWHepatitis delta virus genotype II (isolate TW2476) (HDV)
SHDAG_HDVV2Hepatitis delta virus genotype III (isolate VnzD8349) (HDV)
SHDAG_HDVV3Hepatitis delta virus genotype III (isolate VnzD8375) (HDV)
SHDAG_HDVV1Hepatitis delta virus genotype III (isolate VnzD8624) (HDV)

Major core protein (Protein VII) (pVII)


VCO7_ADE04Human adenovirus E serotype 4 (HAdV-4) (Human adenovirus 4)

Minor capsid protein L2

Select_all Deselect_all  
VL2_BPV1Bovine papillomavirus type 1 reference strain
VL2_BPV3Bovine papillomavirus type 3 reference strain
VL2_BPV4Bovine papillomavirus type 4 reference strain
VL2_BPV5Bovine papillomavirus type 5 reference strain
VL2_COPV6Canine oral papillomavirus (strain Y62) (COPV) reference strain
VL2_CRPVKCottontail rabbit papillomavirus (strain Kansas) (CRPV) (Papillomavirus ... reference strain
VL2_PAPVEEuropean elk papillomavirus (EEPV) reference strain
VL2_HPV1Human papillomavirus type 1 (Human papillomavirus type 1a) reference strain
VL2_HPV10Human papillomavirus type 10 reference strain
VL2_HPV11Human papillomavirus type 11 reference strain
VL2_HPV12Human papillomavirus type 12 reference strain
VL2_HPV16Human papillomavirus type 16 reference strain
VL2_HPV18Human papillomavirus type 18 reference strain
VL2_HPV25Human papillomavirus type 25 reference strain
VL2_HPV26Human papillomavirus type 26 reference strain
VL2_HPV27Human papillomavirus type 27 reference strain
VL2_HPV29Human papillomavirus type 29 reference strain
VL2_HPV2AHuman papillomavirus type 2a reference strain
VL2_HPV31Human papillomavirus type 31 reference strain
VL2_HPV32Human papillomavirus type 32 reference strain
VL2_HPV33Human papillomavirus type 33 reference strain
VL2_HPV34Human papillomavirus type 34 reference strain
VL2_HPV35Human papillomavirus type 35 reference strain
VL2_HPV38Human papillomavirus type 38 reference strain
VL2_HPV04Human papillomavirus type 4 reference strain
VL2_HPV41Human papillomavirus type 41 reference strain
VL2_HPV44Human papillomavirus type 44 reference strain
VL2_HPV45Human papillomavirus type 45 reference strain
VL2_HPV47Human papillomavirus type 47 reference strain
VL2_HPV49Human papillomavirus type 49 reference strain
VL2_HPV05Human papillomavirus type 5 reference strain
VL2_HPV51Human papillomavirus type 51 reference strain
VL2_HPV52Human papillomavirus type 52 reference strain
VL2_HPV54Human papillomavirus type 54 reference strain
VL2_HPV56Human papillomavirus type 56 reference strain
VL2_HPV58Human papillomavirus type 58 reference strain
VL2_HPV61Human papillomavirus type 61 reference strain
VL2_HPV62Human papillomavirus type 62 reference strain
VL2_HPV63Human papillomavirus type 63 reference strain
VL2_HPV69Human papillomavirus type 69 reference strain
VL2_HPV07Human papillomavirus type 7 reference strain
VL2_HPV09Human papillomavirus type 9 reference strain
VL2_PCPV1Pygmy chimpanzee papillomavirus type 1 (PCPV-1) reference strain
VL2_BPV2Bovine papillomavirus type 2
VL2_PAPVDDeer papillomavirus (DPV) (Deer fibroma virus)
VL2_HPV13Human papillomavirus type 13
VL2_HPV14Human papillomavirus type 14
VL2_HPV15Human papillomavirus type 15
VL2_HPV17Human papillomavirus type 17
VL2_HPV19Human papillomavirus type 19
VL2_HPV20Human papillomavirus type 20
VL2_HPV21Human papillomavirus type 21
VL2_HPV22Human papillomavirus type 22
VL2_HPV23Human papillomavirus type 23
VL2_HPV24Human papillomavirus type 24
VL2_HPV28Human papillomavirus type 28
VL2_HPV03Human papillomavirus type 3
VL2_HPV30Human papillomavirus type 30
VL2_HPV36Human papillomavirus type 36
VL2_HPV37Human papillomavirus type 37
VL2_HPV39Human papillomavirus type 39
VL2_HPV40Human papillomavirus type 40
VL2_HPV42Human papillomavirus type 42
VL2_HPV43Human papillomavirus type 43
VL2_HPV48Human papillomavirus type 48
VL2_HPV50Human papillomavirus type 50
VL2_HPV53Human papillomavirus type 53
VL2_HPV55Human papillomavirus type 55
VL2_HPV57Human papillomavirus type 57
VL2_HPV5BHuman papillomavirus type 5b
VL2_HPV60Human papillomavirus type 60
VL2_HPV65Human papillomavirus type 65
VL2_HPV66Human papillomavirus type 66
VL2_HPV67Human papillomavirus type 67
VL2_HPV6AHuman papillomavirus type 6a
VL2_HPV6BHuman papillomavirus type 6b
VL2_HPV70Human papillomavirus type 70
VL2_HPV08Human papillomavirus type 8
VL2_HPV82Human papillomavirus type 82
VL2_HPVMEHuman papillomavirus type ME180
VL2_RHPV1Rhesus papillomavirus type 1 (Rhpv 1)

Minor capsid protein VP2 (Minor structural protein VP2)

Select_all Deselect_all  
VP2_POVBOBovine polyomavirus (BPyV) (Bos taurus polyomavirus 1) reference strain
VP2_BFPYVBudgerigar fledgling disease virus (BFPyV) (Aves polyomavirus 1) reference strain
VP2_POVHAHamster polyomavirus (HaPyV) (Mesocricetus auratus polyomavirus 1) reference strain
VP2_POVJCJC polyomavirus (JCPyV) (JCV) reference strain
VP2_POVMAMurine polyomavirus (strain A2) (MPyV) reference strain
VP2_SV40Simian virus 40 (SV40) reference strain
VP2_POVSMSquirrel monkey polyomavirus reference strain
VP2_POVLYB-lymphotropic polyomavirus (LPV)
VP2_POVBKBK polyomavirus (BKPyV) (Human polyomavirus 1)
VP2_POVBABK polyomavirus (strain AS) (BKPyV)
VP2_POVKIKI polyomavirus (isolate Stockholm 350) (KIPyV)
VP2_POVM3Murine polyomavirus (strain 3) (MPyV)
VP2_POVMCMurine polyomavirus (strain Crawford small-plaque) (MPyV)
VP2_POVMKMurine polyomavirus (strain Kilham) (MPyV) (Murine pneumotropic virus)
VP2_POVS1Simian virus 12 (strain wt100) (SV-12) (Baboon polyomavirus 1)
VP2_POVWUWU polyomavirus (WUPyV)

Protein Vpr (R ORF protein) (Viral protein R)

Select_all Deselect_all  
VPR_HV1MAHuman immunodeficiency virus type 1 group M subtype A (isolate MAL) (HIV-1) reference strain
VPR_HV1B1Human immunodeficiency virus type 1 group M subtype B (isolate BH10) (HIV-1) reference strain
VPR_HV1BRHuman immunodeficiency virus type 1 group M subtype B (isolate BRU/LAI) (HIV-1) reference strain
VPR_HV1H2Human immunodeficiency virus type 1 group M subtype B (isolate HXB2) (HIV-1) reference strain
VPR_HV193Human immunodeficiency virus type 1 group M subtype F1 (isolate 93BR020) (HIV-1) reference strain
VPR_HV1VIHuman immunodeficiency virus type 1 group M subtype F1 (isolate VI850) (HIV-1) reference strain
VPR_HV1ANHuman immunodeficiency virus type 1 group O (isolate ANT70) (HIV-1) reference strain
VPR_HV1MVHuman immunodeficiency virus type 1 group O (isolate MVP5180) (HIV-1) reference strain
VPR_HV2BEHuman immunodeficiency virus type 2 subtype A (isolate BEN) (HIV-2) reference strain
VPR_SIVEKSimian immunodeficiency virus (isolate EK505) (SIV-cpz) (Chimpanzee ... reference strain
VPR_SIVMBSimian immunodeficiency virus (isolate MB66) (SIV-cpz) (Chimpanzee ... reference strain
VPR_SIVTNSimian immunodeficiency virus (isolate TAN1) (SIV-cpz) (Chimpanzee ... reference strain
VPR_HV1A2Human immunodeficiency virus type 1 group M subtype B (isolate ARV2/SF2) (HIV-1)
VPR_HV1B5Human immunodeficiency virus type 1 group M subtype B (isolate BH5) (HIV-1)
VPR_HV1H3Human immunodeficiency virus type 1 group M subtype B (isolate HXB3) (HIV-1)
VPR_HV1JRHuman immunodeficiency virus type 1 group M subtype B (isolate JRCSF) (HIV-1)
VPR_HV1MNHuman immunodeficiency virus type 1 group M subtype B (isolate MN) (HIV-1)
VPR_HV1N5Human immunodeficiency virus type 1 group M subtype B (isolate NY5) (HIV-1)
VPR_HV1OYHuman immunodeficiency virus type 1 group M subtype B (isolate OYI) (HIV-1)
VPR_HV112Human immunodeficiency virus type 1 group M subtype B (isolate PCV12) (HIV-1)
VPR_HV1RHHuman immunodeficiency virus type 1 group M subtype B (isolate RF/HAT3) (HIV-1)
VPR_HV1SCHuman immunodeficiency virus type 1 group M subtype B (isolate SC) (HIV-1)
VPR_HV1S3Human immunodeficiency virus type 1 group M subtype B (isolate SF33) (HIV-1)
VPR_HV1Y2Human immunodeficiency virus type 1 group M subtype B (isolate YU-2) (HIV-1)
VPR_HV1B9Human immunodeficiency virus type 1 group M subtype B (strain 89.6) (HIV-1)
VPR_HV192Human immunodeficiency virus type 1 group M subtype C (isolate 92BR025) (HIV-1)
VPR_HV1ETHuman immunodeficiency virus type 1 group M subtype C (isolate ETH2220) (HIV-1)
VPR_HV1ELHuman immunodeficiency virus type 1 group M subtype D (isolate ELI) (HIV-1)
VPR_HV1Z2Human immunodeficiency virus type 1 group M subtype D (isolate Z2/CDC-Z34) ...
VPR_HV1MPHuman immunodeficiency virus type 1 group M subtype F2 (isolate MP255) (HIV-1)
VPR_HV1M2Human immunodeficiency virus type 1 group M subtype F2 (isolate MP257) (HIV-1)
VPR_HV19NHuman immunodeficiency virus type 1 group M subtype G (isolate 92NG083) (HIV-1)
VPR_HV1SEHuman immunodeficiency virus type 1 group M subtype G (isolate SE6165) (HIV-1)
VPR_HV190Human immunodeficiency virus type 1 group M subtype H (isolate 90CF056) (HIV-1)
VPR_HV1V9Human immunodeficiency virus type 1 group M subtype H (isolate VI991) (HIV-1)
VPR_HV1S9Human immunodeficiency virus type 1 group M subtype J (isolate SE9173) (HIV-1)
VPR_HV1S2Human immunodeficiency virus type 1 group M subtype J (isolate SE9280) (HIV-1)
VPR_HV196Human immunodeficiency virus type 1 group M subtype K (isolate 96CM-MP535) ...
VPR_HV197Human immunodeficiency virus type 1 group M subtype K (isolate 97ZR-EQTB11) ...
VPR_HV1YBHuman immunodeficiency virus type 1 group N (isolate YBF106) (HIV-1)
VPR_HV1YFHuman immunodeficiency virus type 1 group N (isolate YBF30) (HIV-1)
VPR_HV2CAHuman immunodeficiency virus type 2 subtype A (isolate CAM2) (HIV-2)
VPR_HV2D1Human immunodeficiency virus type 2 subtype A (isolate D194) (HIV-2)
VPR_HV2G1Human immunodeficiency virus type 2 subtype A (isolate Ghana-1) (HIV-2)
VPR_HV2KRHuman immunodeficiency virus type 2 subtype A (isolate KR) (HIV-2)
VPR_HV2NZHuman immunodeficiency virus type 2 subtype A (isolate NIH-Z) (HIV-2)
VPR_HV2ROHuman immunodeficiency virus type 2 subtype A (isolate ROD) (HIV-2)
VPR_HV2SBHuman immunodeficiency virus type 2 subtype A (isolate SBLISY) (HIV-2)
VPR_HV2STHuman immunodeficiency virus type 2 subtype A (isolate ST) (HIV-2)
VPR_HV2D2Human immunodeficiency virus type 2 subtype B (isolate D205) (HIV-2)
VPR_HV2EHHuman immunodeficiency virus type 2 subtype B (isolate EHO) (HIV-2)

Protein Vpr (Viral protein R)

VPR_HV2UCHuman immunodeficiency virus type 2 subtype B (isolate UC1) (HIV-2)
VPR_SIVCZSimian immunodeficiency virus (isolate CPZ GAB1) (SIV-cpz) (Chimpanzee ...
VPR_SIVS4Simian immunodeficiency virus (isolate F236/smH4) (SIV-sm) (Simian ...
VPR_SIVGBSimian immunodeficiency virus (isolate GB1) (SIV-mnd) (Simian immunodeficiency ...
VPR_SIVMKSimian immunodeficiency virus (isolate K6W) (SIV-mac) (Simian immunodeficiency ...
VPR_SIVMLSimian immunodeficiency virus (isolate K78) (SIV-mac) (Simian immunodeficiency ...
VPR_SIVM1Simian immunodeficiency virus (isolate Mm142-83) (SIV-mac) (Simian ...
VPR_SIVSPSimian immunodeficiency virus (isolate PBj14/BCL-3) (SIV-sm) (Simian ...

Nucleoprotein (N protein) (Nucleocapsid protein) (p38) (p40)


WNCAP_BDVBorna disease virus (BDV)