Rhadinovirus

VIRION

Enveloped, spherical to pleomorphic, 150-200 nm in diameter, T=16 icosahedral symmetry. Capsid consists of 162 capsomers and is surrounded by an amorphous tegument. Glycoproteins complexes are embedded in the lipid envelope.

GENOME

Monopartite, linear, dsDNA genome of about 180 kb. The genome contains terminal and internal reiterated sequences.

GENE EXPRESSION

Each viral transcript usually encodes a single protein and has a promoter/regulatory sequence, a TATA box, a transcription initiation site, a 5’ leader sequence of 30-300 bp (not translated), a 3’ untranslated sequence of 10-30 bp, and a poly A signal. There are many gene overlaps. There are only few spliced genes. Some of the expressed ORFs are antisense to each other. Some ORFs can be accessed from more than one promoter. There are some non-coding genes.

REPLICATION

NUCLEAR

Lytic replication:

  1. Attachment of the viral glycoproteins to host receptors mediates endocytosis of the virus into the host cell.
  2. Fusion with the plasma membrane to release the core and the tegument proteins into the host cytoplasm.
  3. The capsid is transported to the nuclear pore where the viral DNA is released into the nucleus.
  4. Transcription of immediate early genes which promote transcription of early genes and protect the virus against innate host immunity.
  5. Transcription of early viral mRNA by host polymerase II, encoding proteins involved in replication of the viral DNA.
  6. A first round of circular genome amplification occurs by bidirectional replication
  7. Synthesis of linear concatemer copies of viral DNA by rolling circle.
  8. Transcription of late mRNAs by host polymerase II, encoding structural proteins.
  9. Assembly of the virus in nuclear viral factories and budding through the inner lamella of the nuclear membrane which has been modified by the insertion of herpes glycoproteins, throughout the Golgi and final release at the plasma membrane.

Latent replication : replication of circular viral episome in tandem with the host cell DNA using the host cell replication machinery.

Host-virus interaction

Adaptive immune response inhibition

Kaposi proteins MIR1/K3 and MIR2/K5 are E3 ubiquitin ligase which promote the ubiquitination and subsequent degradation of host MHC-I and CD1D molecules, thereby inhibiting the host adaptive immune response.

Apoptosis modulation

Kaposi sarcoma-associated herpesvirus encodes a viral FLICE inhibitory protein that blocks apoptosis .

Autophagy modulation

The KSHV v-Bcl-2 inhibits host autophagy by interacting with host beclin-1 .

Cell-cycle modulation

KSHV v-cyclin encoded by ORF72, is a cyclin-like protein that shares homology to cellular D-type cyclins. Like human cyclins, v-cyclin interacts with cdk4 and cdk6 to activate these kinases and promote the G1/S phase transition. The conserved UL24 family of human alpha, beta and gamma herpesviruses induces a cell cycle arrest at G2/M transition through inactivation of the host cyclinB/cdc2 complex. EBV encodes an UL24 homolog termed ORF20 that should perform this role .

Innate immune response inhibition

Human herpes virus 8 (HHV-8) has developed unique mechanisms to modulate host immune system by incorporating viral homologs to several cellular regulatory genes into its genome. For instance, vIRF-1 is able to bind to both IRF-3 and IRF-7 and efficiently inhibits the formation of transcriptionally competent IRF-3-CBP/p300 complexes .

Splicing inhibition

KSHV ORF57 modulates the viral and host mRNA expression by exporting unspliced mRNA, thereby inducing alternative splicing .

Matching UniProtKB/Swiss-Prot entries

103 entries grouped by strain

All proteins are shown (view only 84 complete proteome entries)

75 entries

Saimiriine herpesvirus 2 (strain 11) (SaHV-2) (Herpesvirus saimiri) reference strain

Select_all Deselect_all  
BRLF1_SHV21Putative transcription activator BRLF1 homolog (Transcription activator EDRF1)
CCPH_SHV21Complement control protein homolog (CCPH)
CD59_SHV21Surface glycoprotein CD59 homolog
CGH2_SHV21Cyclin homolog (V-cyclin)
DNBI_SHV21Major DNA-binding protein
DPOL_SHV21DNA polymerase (EC 2.7.7.7)
DUT_SHV21Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) (EC 3.6.1.23) (dUTP ...
DYR_SHV21Viral dihydrofolate reductase (vDHFR) (EC 1.5.1.3)
EXON_SHV21Alkaline exonuclease (EC 3.1.11.-)
GB_SHV21Envelope glycoprotein B (gB)
GCVK_SHV21Probable ganciclovir kinase (EC 2.7.1.-)
GH_SHV21Glycoprotein H (gH)
GL_SHV21Envelope glycoprotein L (gL)
GM_SHV21Envelope glycoprotein M (gM)
GN_SHV21Glycoprotein N (gN)
HELI_SHV21Probable ATP-dependent helicase 44 (EC 3.6.4.-)
IE68_SHV21Immediate-early protein
IL17_SHV21Viral interleukin-17 (vIL-17) (Immediate early gene 13 protein)
KITH_SHV21Thymidine kinase (EC 2.7.1.21)
MCP_SHV21Major capsid protein (MCP)
ORF57_SHV21ORF57 protein (52 kDa immediate-early phosphoprotein) (EB2 protein homolog)
PORTL_SHV21Portal protein 43
PPR_SHV21Protease precursor (pPR) (Capsid protein P40)
RIR1_SHV21Ribonucleoside-diphosphate reductase large subunit (EC 1.17.4.1) ...
RIR2_SHV21Ribonucleoside-diphosphate reductase small chain (EC 1.17.4.1) (Ribonucleotide ...
TEGU_SHV21Probable large tegument protein
TG11_SHV21Tegument protein UL11 homolog
TRM1_SHV21Tripartite terminase subunit UL28 homolog
TRM3_SHV21Tripartite terminase subunit UL15 homolog (DNA-packaging protein 29) (Terminase ...
TSTP_SHV21Transforming protein STP
TYSY_SHV21Thymidylate synthase (TS) (TSase) (EC 2.1.1.45)
UL07_SHV21Gene 42 protein
UL16_SHV21Capsid-binding protein 33 (Gene 33 protein)
UL17_SHV21Virion-packaging protein 32
UL24_SHV21Gene 20 protein
UL25_SHV21Virion-packaging protein 19
UL31_SHV21Virion egress protein 69 (Primary envelopment factor 69)
UL32_SHV21Packaging protein UL32
UL34_SHV21Virion egress protein 67 (Primary envelopment factor 67)
UL49_SHV21Uncharacterized gene 66 protein
UL52_SHV21Helicase/primase complex protein (Probable DNA replication gene 56 protein)
UL71_SHV21Gene 55 protein
UL79_SHV21Gene 18 protein
UL87_SHV21Gene 24 protein
UL91_SHV21Uncharacterized gene 30 protein
UL92_SHV21Gene 31 protein
UL95_SHV21Gene 34 protein
UL96_SHV21Gene 35 protein
UNG_SHV21Uracil-DNA glycosylase (UDG) (EC 3.2.2.27)
V120_SHV21Capsid assembly protein 63
VG05_SHV21Uncharacterized gene 5 protein
VG10_SHV21Uncharacterized gene 10 protein
VG11_SHV21Uncharacterized gene 11 protein
VG12_SHV21Uncharacterized gene 12 protein
VG16_SHV21Bcl-2-like gene 16 protein
VG23_SHV21Uncharacterized gene 23 protein
VG27_SHV21Uncharacterized gene 27 protein
VG28_SHV21Uncharacterized gene 28 protein
VG40_SHV21Uncharacterized gene 40 protein
VG41_SHV21Uncharacterized gene 41 protein
VG45_SHV21Uncharacterized gene 45 protein
VG48_SHV21Uncharacterized gene 48 protein
VG49_SHV21Uncharacterized gene 49 protein
VG51_SHV21Gene 51 glycoprotein
VG52_SHV21Uncharacterized gene 52 protein
VG58_SHV21Gene 58 protein
VG59_SHV21Gene 59 protein
VG71_SHV21Uncharacterized gene 71 protein
VG74_SHV21G-protein coupled receptor homolog ECRF3
VIEG_SHV21Immediate-early protein IE-G
VP03_SHV21Probable membrane antigen 3 (Tegument protein)
VP19_SHV21Triplex capsid protein 62
VP23_SHV21Triplex capsid protein 26 (Gene 26 protein)
VP26_SHV21Capsid protein VP26
VP75_SHV21Probable membrane antigen 75 (Tegument protein)

8 entries

Human herpesvirus 8 type P (isolate GK18) (HHV-8) (Kaposi's sarcoma-associated herpesvirus) reference strain

Select_all Deselect_all  
DEN_HHV8PDeneddylase ORF64 (EC 3.4.19.12) (EC 3.4.22.-) (Tegument protein VP1-2) ...
MIR1_HHV8PE3 ubiquitin-protein ligase MIR1 (EC 6.3.2.-) (IE1B protein) (Modulator of ...
MIR2_HHV8PE3 ubiquitin-protein ligase MIR2 (EC 6.3.2.-) (IE1A protein) (Modulator of ...
ORF57_HHV8PORF57 protein (EB2 protein homolog)
OX2V_HHV8POX-2 membrane glycoprotein homolog (Viral OX2) (vOX2)
TYSY_HHV8PThymidylate synthase (TS) (TSase) (EC 2.1.1.45)
VG74_HHV8PG-protein coupled receptor homolog 74
VMI2_HHV8PViral macrophage inflammatory protein 2 (Viral macrophage inflammatory protein ...

6 entries

Saimiriine herpesvirus 2 (strain 488) (SaHV-2) (Herpesvirus saimiri)

Select_all Deselect_all  
DYR_SHV2CViral dihydrofolate reductase (vDHFR) (EC 1.5.1.3)
IL17_SHV2CViral interleukin-17 (vIL-17) (Immediate early gene 13 protein)
STP_SHV2CSaimiri transformation-associated protein (Collagen-like protein) (stpC)
TIP_SHV2CTyrosine-protein kinase-interacting protein (Tip)
YDH3_SHV2CUncharacterized 9.5 kDa protein in DHFR 3'region (ORF3)
YDH4_SHV2CUncharacterized 9.9 kDa protein in DHFR 3'region (ORF4)

3 entries

Bovine herpesvirus 4 (strain DN-599) (BoHV-4) (Movar virus)

Select_all Deselect_all  
BRLF1_BHV4DPutative transcription activator BRLF1 homolog
GCNT3_BHV4DBeta-1,3-galactosyl-O-glycosyl-glycoprotein ...
VIE1_BHV4DProbable E3 ubiquitin-protein ligase IE1 (EC 6.3.2.-) (32.7 kDa immediate early ...

3 entries

Saimiriine herpesvirus 2 (strain 484-77) (SaHV-2) (Herpesvirus saimiri)

Select_all Deselect_all  
DYR_SHV24Viral dihydrofolate reductase (vDHFR) (EC 1.5.1.3)
STP_SHV24Saimiri transformation-associated protein (Collagen-like protein) (stpC)
TIP_SHV24Tyrosine-protein kinase-interacting protein (Tip)

2 entries

Murid herpesvirus 4 (MuHV-4) (Murine gammaherpesvirus 68)

Select_all Deselect_all  
DEN_MHV68Deneddylase ORF64 (EC 3.4.19.12) (EC 3.4.22.-) (Tegument protein VP1-2) ...
MIR1_MHV68E3 ubiquitin-protein ligase MIR1 (EC 6.3.2.-) (MK3) (Modulator of immune ...

1 entry

Ateline herpesvirus 3 (AtHV-3) (Herpesvirus ateles)


TIO_ATHV3Protein tio

1 entry

Bovine herpesvirus 4 (BoHV-4) (Movar virus)


GCNT3_BHV4Beta-1,3-galactosyl-O-glycosyl-glycoprotein ...

1 entry

Bovine herpesvirus 4 (strain LVR140) (BoHV-4) (Movar virus)


GCNT3_BHV4LBeta-1,3-galactosyl-O-glycosyl-glycoprotein ...

1 entry

Bovine herpesvirus 4 (strain V. test) (BoHV-4) (Movar virus)


GCNT3_BHV4VBeta-1,3-galactosyl-O-glycosyl-glycoprotein ...

1 entry

Herpesvirus ateles


TYSY_HSVATThymidylate synthase (TS) (TSase) (EC 2.1.1.45)

1 entry

Saimiriine herpesvirus 2 (strain 484) (SaHV-2) (Herpesvirus saimiri)


TIP_SHV48Tyrosine protein kinase-interacting protein (Tip) (TipC484)