Allexivirus

Molecular biology

VIRION

Non-enveloped, flexuous, filamentous, 800 nm long and 12 nm in diameter.

GENOME

Linear ssRNA(+) genome of 9 kb in size. The 3’ terminus is polyadenylated. Encodes for 6 proteins.

GENE EXPRESSION

The virion RNA is infectious and serves as both the genome and viral messenger RNA. RNA-dependent RNA polymerase (RdRp) is translated directly from the genomic RNA. The other ORFS are presumably transcribed as monocistronic subgenomic mRNAs (sgRNAs.

REPLICATION

CYTOPLASMIC

  1. Virus penetrates into the host cell.
  2. Uncoating, and release of the viral genomic RNA into the cytoplasm.
  3. The viral RNA is translated as a monocistronic mRNA to produce the RdRp (encoded by the 5’-proximal ORF).
  4. A negative-sense complementary ssRNA is synthesized using the genomic RNA as a template.
  5. New genomic RNA is synthesized using the negative-sense RNA as a template.
  6. Internal subgenomic promoters are used to transcribe the sgRNAs. Traduction of these sgRNAs yields the capsid and movement proteins.
  7. Formation of new virus particles.

Matching UniProtKB/Swiss-Prot entries

6 entries grouped by strain

6 entries

Shallot virus X (ShVX) reference strain

Select_all Deselect_all  
CAPSD_SHVXCapsid protein (CP) (Coat protein)
ORF4_SHVXUncharacterized ORF4 protein (42 kDa protein)
RDRP_SHVXRNA replication protein (194 kDa protein)
TGB1_SHVXMovement and silencing protein TGBp1 (25 kDa protein) (Silencing suppressor ...
TGB2_SHVXMovement protein TGB2 (12 kDa protein) (Triple gene block 2 protein) (TGBp2)
VNBP_SHVX14.7 kDa protein (Putative nucleic acid-binding protein)