Potyvirus (taxid:12195)

VIRION

image

Non-enveloped, flexuous, filamentous, of 720-850 nm long and 12-15 nm in diameter. Symmetry helical. Presence of characteristic inclusion bodies within infected plant cells.

GENOME

image

Monopartite, linear, ssRNA(+) genome of 10 kb in size. 3' terminus has a poly (A) tract. 5' terminus has a genome-linked protein (VPg).

GENE EXPRESSION

Virion RNA is infectious and serves as both the genome and viral messenger RNA. The genomic RNA is translated into polyproteins by VPG-EIF4 Viral initiation of translation. The polyproteins are then processed into functional products by the action of three viral-encoded proteinases. P3N-PIPO is expressed by polymerase slippage mechanism from the P3 ORF and probably acts as a movement protein .

ENZYMES

REPLICATION

CYTOPLASMIC

  1. Virus penetrates into the host cell.
  2. Uncoating, and release of the viral genomic RNA into the cytoplasm.
  3. The viral RNA is translated to produce a polyprotein which is processed by viral proteases into the RdRp protein and structural proteins.
  4. Replication takes place in cytoplasmic viral factories. A dsRNA genome is synthesized from the genomic ssRNA(+).
  5. The dsRNA genome is transcribed/replicated thereby providing viral mRNAs/new ssRNA(+) genomes.
  6. Virus assembly in the cytoplasm.
  7. Viral movement protein P3N-PIPO probably mediates virion cell-to-cell transfer.

Host-virus interaction

Suppression of RNA silencing

Potyviruses HC-PRO functions as a suppressor of RNA silencing .

Suppression of other plant defenses

VPg is a potent inhibitor of PAP depurination of RNA, thereby suppressing one of the plant defense mechanisms .

Matching UniProtKB/Swiss-Prot entries

(all links/actions below point to uniprot.org website)

49 entries grouped by strain

2 entries

Potato virus Y (strain N) (PVY) reference strain

Select_allDeselect_all
POLG_PVYN Genome polyprotein [Cleaved into: P1 protease (EC 3.4.21.-) (Leader protease P1) (N-terminal ...
MVP_PVYN P3N-PIPO polyprotein [Cleaved into: P1 protease (EC 3.4.21.-) (N-terminal protein) (P1 proteinase); ...

2 entries

Soybean mosaic virus (strain N) (SMV) reference strain

Select_allDeselect_all
POLG_SBMVN Genome polyprotein [Cleaved into: P1 protease (EC 3.4.21.-) (Leader protease P1) (N-terminal ...
MVP_SBMVN P3N-PIPO polyprotein [Cleaved into: P1 protease (EC 3.4.21.-) (N-terminal protein) (P1 proteinase); ...

2 entries

Turnip mosaic virus (strain Japanese) (TuMV) reference strain

Select_allDeselect_all
MVP_TUMVJ P3N-PIPO polyprotein [Cleaved into: P1 protease (EC 3.4.21.-) (N-terminal protein) (P1 proteinase); ...
POLG_TUMVJ Genome polyprotein [Cleaved into: P1 protease (EC 3.4.21.-) (Leader protease P1) (N-terminal ...

2 entries

Bean common mosaic necrosis virus (strain NL-3) (BCMNV) (Bean common mosaic virus serotype A (strain NL-3))

Select_allDeselect_all
POLG_BCMNN Genome polyprotein [Cleaved into: P1 protease (EC 3.4.21.-) (Leader protease P1) (N-terminal ...
MVP_BCMNN P3N-PIPO polyprotein [Cleaved into: P1 protease (EC 3.4.21.-) (N-terminal protein) (P1 proteinase); ...

2 entries

Bean yellow mosaic virus

Select_allDeselect_all
POLG_BYMV Genome polyprotein [Cleaved into: P1 protease (EC 3.4.21.-) (Leader protease P1) (N-terminal ...
MVP_BYMV P3N-PIPO polyprotein [Cleaved into: P1 protease (EC 3.4.21.-) (N-terminal protein) (P1 proteinase); ...

2 entries

Beet mosaic virus (BtMV)

Select_allDeselect_all
POLG_BTMV Genome polyprotein [Cleaved into: P1 protease (EC 3.4.21.-) (Leader protease P1) (N-terminal ...
MVP_BTMV P3N-PIPO polyprotein [Cleaved into: P1 protease (EC 3.4.21.-) (N-terminal protein) (P1 proteinase); ...

2 entries

Lettuce mosaic virus (strain 0 / isolate French) (LMV)

Select_allDeselect_all
POLG_LMV0 Genome polyprotein [Cleaved into: P1 protease (EC 3.4.21.-) (Leader protease P1) (N-terminal ...
MVP_LMV0 P3N-PIPO polyprotein [Cleaved into: P1 protease (EC 3.4.21.-) (N-terminal protein) (P1 proteinase); ...

2 entries

Lettuce mosaic virus (strain E) (LMV)

Select_allDeselect_all
POLG_LMVE Genome polyprotein [Cleaved into: P1 proteinase (EC 3.4.-.-) (N-terminal protein); Helper component ...
MVP_LMVE P3N-PIPO polyprotein [Cleaved into: P1 protease (EC 3.4.21.-) (N-terminal protein) (P1 proteinase); ...

2 entries

Papaya ringspot virus (strain P / mutant HA)

Select_allDeselect_all
POLG_PRSVH Genome polyprotein [Cleaved into: P1 proteinase (EC 3.4.-.-) (N-terminal protein); Helper component ...
MVP_PRSVH P3N-PIPO polyprotein [Cleaved into: P1 protease (EC 3.4.21.-) (N-terminal protein) (P1 proteinase); ...

2 entries

Pea seed-borne mosaic virus (strain DPD1)

Select_allDeselect_all
POLG_PSBMV Genome polyprotein [Cleaved into: P1 proteinase (EC 3.4.-.-) (N-terminal protein); Helper component ...
MVP_PSBMV P3N-PIPO polyprotein [Cleaved into: P1 protease (EC 3.4.21.-) (N-terminal protein) (P1 proteinase); ...

2 entries

Peanut mottle virus (strain M)

Select_allDeselect_all
POLG_PEMVM Genome polyprotein [Cleaved into: P1 protease (EC 3.4.21.-) (Leader protease P1) (N-terminal ...
MVP_PEMVM P3N-PIPO polyprotein [Cleaved into: P1 protease (EC 3.4.21.-) (N-terminal protein) (P1 proteinase); ...

2 entries

Pepper mottle virus (isolate California) (PeMV) (PepMoV C)

Select_allDeselect_all
POLG_PEMVC Genome polyprotein [Cleaved into: P1 protease (EC 3.4.21.-) (Leader protease P1) (N-terminal ...
MVP_PEMVC P3N-PIPO polyprotein [Cleaved into: P1 protease (EC 3.4.21.-) (N-terminal protein) (P1 proteinase); ...

2 entries

Plum pox potyvirus (isolate NAT) (PPV)

Select_allDeselect_all
POLG_PPVNA Genome polyprotein [Cleaved into: P1 protease (EC 3.4.21.-) (Leader protease P1) (N-terminal ...
MVP_PPVNA P3N-PIPO polyprotein [Cleaved into: P1 protease (EC 3.4.21.-) (N-terminal protein) (P1 proteinase); ...

2 entries

Plum pox potyvirus (strain D) (PPV)

Select_allDeselect_all
POLG_PPVD Genome polyprotein [Cleaved into: P1 protease (EC 3.4.21.-) (Leader protease P1) (N-terminal ...
MVP_PPVD P3N-PIPO polyprotein [Cleaved into: P1 protease (EC 3.4.21.-) (N-terminal protein) (P1 proteinase); ...

2 entries

Plum pox potyvirus (strain SK 68) (PPV)

Select_allDeselect_all
POLG_PPVSK Genome polyprotein [Cleaved into: P1 protease (EC 3.4.21.-) (Leader protease P1) (N-terminal ...
MVP_PPVSK P3N-PIPO polyprotein [Cleaved into: P1 protease (EC 3.4.21.-) (N-terminal protein) (P1 proteinase); ...

2 entries

Potato virus A (PVA)

Select_allDeselect_all
POLG_PVMA Genome polyprotein [Cleaved into: P1 protease (EC 3.4.21.-) (Leader protease P1) (N-terminal ...
MVP_PVMA P3N-PIPO polyprotein [Cleaved into: P1 protease (EC 3.4.21.-) (N-terminal protein) (P1 proteinase); ...

2 entries

Potato virus Y (strain Hungarian) (PVY)

Select_allDeselect_all
POLG_PVYHU Genome polyprotein [Cleaved into: P1 protease (EC 3.4.21.-) (Leader protease P1) (N-terminal ...
MVP_PVYHU P3N-PIPO polyprotein [Cleaved into: P1 protease (EC 3.4.21.-) (N-terminal protein) (P1 proteinase); ...

2 entries

Soybean mosaic virus (strain G2) (SMV)

Select_allDeselect_all
POLG_SBMVG Genome polyprotein [Cleaved into: P1 protease (EC 3.4.21.-) (Leader protease P1) (N-terminal ...
MVP_SBMVG P3N-PIPO polyprotein [Cleaved into: P1 protease (EC 3.4.21.-) (N-terminal protein) (P1 proteinase); ...

2 entries

Tobacco etch virus (TEV)

Select_allDeselect_all
POLG_TEV Genome polyprotein [Cleaved into: P1 protease (EC 3.4.21.-) (Leader protease P1) (N-terminal ...
MVP_TEV P3N-PIPO polyprotein [Cleaved into: P1 protease (EC 3.4.21.-) (N-terminal protein) (P1 proteinase); ...

2 entries

Tobacco vein mottling virus (TVMV)

Select_allDeselect_all
POLG_TVMV Genome polyprotein [Cleaved into: P1 protease (EC 3.4.21.-) (Leader protease P1) (N-terminal ...
MVP_TVMV P3N-PIPO polyprotein [Cleaved into: P1 protease (EC 3.4.21.-) (N-terminal protein) (P1 proteinase); ...

2 entries

Turnip mosaic virus (strain Quebec) (TuMV)

Select_allDeselect_all
POLG_TUMVQ Genome polyprotein [Cleaved into: P1 proteinase (EC 3.4.-.-) (N-terminal protein); Helper component ...
MVP_TUMVQ P3N-PIPO polyprotein [Cleaved into: P1 protease (EC 3.4.21.-) (N-terminal protein) (P1 proteinase); ...

2 entries

Zucchini yellow mosaic virus (strain California) (ZYMV)

Select_allDeselect_all
POLG_ZYMVC Genome polyprotein [Cleaved into: P1 protease (EC 3.4.21.-) (Leader protease P1) (N-terminal ...
MVP_ZYMVC P3N-PIPO polyprotein [Cleaved into: P1 protease (EC 3.4.21.-) (N-terminal protein) (P1 proteinase); ...

2 entries

Zucchini yellow mosaic virus (strain Reunion Island) (ZYMV)

Select_allDeselect_all
POLG_ZYMVR Genome polyprotein [Cleaved into: P1 proteinase (EC 3.4.-.-) (N-terminal protein); Helper component ...
MVP_ZYMVR P3N-PIPO polyprotein [Cleaved into: P1 protease (EC 3.4.21.-) (N-terminal protein) (P1 proteinase); ...

2 entries

Zucchini yellow mosaic virus (strain Singapore) (ZYMV)

Select_allDeselect_all
POLG_ZYMVS Genome polyprotein [Cleaved into: P1 protease (EC 3.4.21.-) (Leader protease P1) (N-terminal ...
MVP_ZYMVS P3N-PIPO polyprotein [Cleaved into: P1 protease (EC 3.4.21.-) (N-terminal protein) (P1 proteinase); ...

1 entry

Plum pox potyvirus (strain Rankovic) (PPV)

POLG_PPVRA Genome polyprotein [Cleaved into: P1 protease (EC 3.4.21.-) (Leader protease P1) (N-terminal ...
These structures were created with the help of Colabfold by Jason Nomburg, Nathan Price and Jennifer Doudna (ModelArchive).

Brugmansia mosaic virus taxid:1239452

Protein ModelArchive
PIPO ma-jd-viral-34670

Callistephus mottle virus taxid:1886606

Protein ModelArchive
PIPO ma-jd-viral-30643

Euphorbia ringspot virus taxid:291286

Protein ModelArchive
PIPO ma-jd-viral-36500

Habenaria mosaic virus taxid:1324128

Protein ModelArchive
PIPO ma-jd-viral-30645

Pecan mosaic-associated virus taxid:1856031

Protein ModelArchive
Genome polyprotein ma-jd-viral-02838
Genome polyprotein ma-jd-viral-06774
Genome polyprotein ma-jd-viral-08216
Genome polyprotein ma-jd-viral-14512
Genome polyprotein ma-jd-viral-15877
Genome polyprotein ma-jd-viral-30037
Genome polyprotein ma-jd-viral-18843
Genome polyprotein ma-jd-viral-23896
Genome polyprotein ma-jd-viral-19559
Genome polyprotein ma-jd-viral-54472

Potato virus A taxid:12215

Protein ModelArchive
PIPO ma-jd-viral-33461
PIPO ma-jd-viral-33461

Sweet potato virus G taxid:46619

Protein ModelArchive
Genome polyprotein ma-jd-viral-32464