Totivirus (taxid:11007)

VIRION

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Non enveloped, icosahedral virion composed of a 60 asymmetric dimers of the single capsid protein (CP), about 40 nm in diameter. The capsid has a T=2* icosahedral symmetry.
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GENOME

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Linear dsRNA genome of 4.6-6.7 kb. Contains 2 overlapping ORFs gag and pol, respectively encoding CP and RdRp.
Some isolates contain additional satellite dsRNAs which encode "killer" proteins and are encapsidated separately.

GENE EXPRESSION

The dsRNA genome is never completely uncoated, to prevent activation of antiviral state by the cell in response to dsRNA. The viral polymerase synthesizes a mRNA, which is translocated to the cell cytoplasm where it is translated.
Translation is initiated on a unique internal ribosome entry site (IRES) element situated at the 5'-UTR.
In most totiviruses, the plus-strand viral transcript is flanked by a 5'untranslated region (5'-UTR) and a 3'-UTR and directs the translation of a major CP (Gag) and a minor fusion protein CP-RdRP (Gag-Pol) via a -1 ribosomal frameshift.
In other totiviruses (e.g. Hv190SV), RDRP is detected only as a separate, nonfused polypeptide and may be expressed through a termination-reinitiation mechanism.
Cap-snatching in totivirus L-A furnishes its transcript with a cap structure derived from host mRNAs .

ENZYMES

REPLICATION

CYTOPLASMIC

  1. Virus remains intracellular.
  2. Transcription of the dsRNA genome by viral polymerase occurs inside the virion, so that dsRNA is never exposed to the cytoplasm. This plus-strand transcript is used as template for translation.
  3. The 5' termini of the transcripts are diphosphorylated.
  4. (+)RNAs are encapsidated in a sub-viral particle, in which they are transcribed to give RNA (-) molecules with which they become base-paired to produce dsRNA genomes.
  5. Mature virions are transmitted to new cell by cytoplasmic exchange, sporogenesis or hyphal anastomosis.

Matching UniProtKB/Swiss-Prot entries

(all links/actions below point to uniprot.org website)

6 entries grouped by strain

2 entries

Saccharomyces cerevisiae virus L-A (ScV-L-A) (ScVL1) reference strain

Select_allDeselect_all
GAG_SCVLA Major capsid protein (Gag protein) (Major coat protein)
RDRP_SCVLA Probable RNA-directed RNA polymerase (EC 2.7.7.48) (Gag-Pol protein)

2 entries

Saccharomyces cerevisiae virus L-BC (ScV-L-BC) (ScVLa) reference strain

Select_allDeselect_all
RDRP_SCVLB Probable RNA-directed RNA polymerase (EC 2.7.7.48) (Gag-Pol protein)
GAG_SCVLB Major capsid protein (Gag protein) (Major coat protein)

1 entry

Ustilago maydis P4 virus (UmV4) (UmV-P4)

KP4T_UMV4 KP4 killer toxin (Fungal toxin KP4) (Killer protein 4)

1 entry

Ustilago maydis P6 virus (UmV6) (UmV-P6)

KP6T_UMV6 KP6 killer toxin (Killer protein 6) [Cleaved into: KP6 killer toxin subunit alpha (VP10); KP6 killer ...
These structures were created with the help of Colabfold by Jason Nomburg, Nathan Price and Jennifer Doudna (ModelArchive).

Beihai blue swimmer crab virus 3 taxid:1922370

Protein ModelArchive
Capsid protein ma-jd-viral-58819
RNA-directed RNA polymerase (EC 2.7.7.48) ma-jd-viral-19940

Gremmeniella abietina RNA virus L2 taxid:279539

Protein ModelArchive
Putative coat protein ma-jd-viral-15402
RNA-directed RNA polymerase (EC 2.7.7.48) ma-jd-viral-19842

Hubei toti-like virus 2 taxid:1923308

Protein ModelArchive
Major coat protein L-A virus domain-containing protein ma-jd-viral-21430
RNA-directed RNA polymerase (EC 2.7.7.48) ma-jd-viral-19931

Maize-associated totivirus 1 taxid:1729670

Protein ModelArchive
Capsid protein ma-jd-viral-32287
RNA-directed RNA polymerase (EC 2.7.7.48) ma-jd-viral-19703

Panax notoginseng virus A taxid:1777016

Protein ModelArchive
Putative coat protein ma-jd-viral-21434
RNA-directed RNA polymerase (EC 2.7.7.48) ma-jd-viral-19929

Red clover powdery mildew-associated totivirus 1 taxid:1714362

Protein ModelArchive
Capsid protein ma-jd-viral-21436
RNA-directed RNA polymerase (EC 2.7.7.48) ma-jd-viral-19928

Red clover powdery mildew-associated totivirus 2 taxid:1714363

Protein ModelArchive
Capsid protein ma-jd-viral-21410
RNA-directed RNA polymerase (EC 2.7.7.48) ma-jd-viral-19945

Red clover powdery mildew-associated totivirus 3 taxid:1714364

Protein ModelArchive
Capsid protein ma-jd-viral-21438
RNA-directed RNA polymerase (EC 2.7.7.48) ma-jd-viral-19930

Red clover powdery mildew-associated totivirus 5 taxid:1714366

Protein ModelArchive
Capsid protein ma-jd-viral-61198
RNA-directed RNA polymerase (EC 2.7.7.48) ma-jd-viral-19933

Red clover powdery mildew-associated totivirus 6 taxid:1714367

Protein ModelArchive
Capsid protein ma-jd-viral-61197
RNA-directed RNA polymerase (EC 2.7.7.48) ma-jd-viral-19936

Red clover powdery mildew-associated totivirus 7 taxid:1714368

Protein ModelArchive
Capsid protein ma-jd-viral-61199
RNA-directed RNA polymerase (EC 2.7.7.48) ma-jd-viral-19939

Saccharomyces cerevisiae virus L-BC taxid:42478

Protein ModelArchive
Major capsid protein (Gag protein) (Major coat protein) ma-jd-viral-21444
Probable RNA-directed RNA polymerase (EC 2.7.7.48) (Gag-Pol protein) ma-jd-viral-19944

Wuhan insect virus 26 taxid:1923730

Protein ModelArchive
Capsid protein ma-jd-viral-21437
RNA-directed RNA polymerase (EC 2.7.7.48) ma-jd-viral-19935

Wuhan insect virus 27 taxid:1923731

Protein ModelArchive
Major coat protein L-A virus domain-containing protein ma-jd-viral-21441
RNA-directed RNA polymerase (EC 2.7.7.48) ma-jd-viral-19934

Xanthophyllomyces dendrorhous virus L1A taxid:1167690

Protein ModelArchive
Capsid protein ma-jd-viral-21440
RNA-directed RNA polymerase (EC 2.7.7.48) ma-jd-viral-19943