Polyomavirus

Molecular biology

VIRION

Non-enveloped, icosahedral capsid with a T=7d symmetry, about 45 nm in diameter.

GENOME

Circular dsDNA about 5 kb in size, associated with cellular histones in a chromatin-like complex. Encodes for 5-9 proteins.

GENE EXPRESSION

Transcription is nuclear, in two phases; early (replication), late (virion assembly). All genes are transcribed by host RNA pol II.

REPLICATION

NUCLEAR

  1. Virus attaches to host receptors and is endocytosed into vesicles in the host cell.
  2. Virion transits through endoplasmic reticulum where host protein disulfide isomerases rearrange its capsid structure
  3. Export of misfolded virion to the cytoplasm possibly through host ERAD pathway
  4. Loss of VP1 in the low-calcium conditions of the cytosol
  5. Import of genomic DNA into host nucleus.
  6. Transcription of early genes (LT and sT genes)
  7. Replication of the DNA genome in the nucleus.
  8. Transcription of late genes encoding for structural proteins (VP1, VP2 and VP3).
  9. Assembly of new virions in the nucleus.
  10. Virions are released by lysis of the cell.

Matching UniProtKB/Swiss-Prot entries

50 entries grouped by strain

Only complete proteome entries are shown ( view all 79 entries)

6 entries

Simian virus 40 (SV40) reference strain

Select_all Deselect_all  
AGNO_SV40Agnoprotein
LT_SV40Large T antigen (LT) (LT-AG) (EC 3.6.4.-)
SELP_SV40SV40 early leader protein (SELP)
ST_SV40Small t antigen (ST) (ST-AG)
VP1_SV40Major capsid protein VP1 (Major structural protein VP1)
VP2_SV40Minor capsid protein VP2 (Minor structural protein VP2)

6 entries

Budgerigar fledgling disease virus (BFPyV)

Select_all Deselect_all  
AGNO1_BFPYVAvian agnoprotein 1a (Agno-1a)
AGNO2_BFPYVAvian agnoprotein 2b (Agno-2b)
LT_BFPYVLarge T antigen (LT) (LT-AG) (EC 3.6.4.-)
ST_BFPYVSmall t antigen (ST) (ST-AG)
VP1_BFPYVMajor capsid protein VP1 (Major structural protein VP1)
VP2_BFPYVMinor capsid protein VP2 (Minor structural protein VP2)

5 entries

BK polyomavirus (BKPyV)

Select_all Deselect_all  
AGNO_POVBKAgnoprotein (Agno)
LT_POVBKLarge T antigen (LT) (LT-AG) (EC 3.6.4.-)
ST_POVBKSmall t antigen (ST) (ST-AG)
VP1_POVBKMajor capsid protein VP1 (Major structural protein VP1)
VP2_POVBKMinor capsid protein VP2 (Minor structural protein VP2)

5 entries

BK polyomavirus (strain AS) (BKPyV)

Select_all Deselect_all  
AGNO_POVBAAgnoprotein (Agno)
LT_POVBALarge T antigen (LT) (LT-AG) (EC 3.6.4.-)
ST_POVBASmall t antigen (ST) (ST-AG)
VP1_POVBAMajor capsid protein VP1 (Major structural protein VP1)
VP2_POVBAMinor capsid protein VP2 (Minor structural protein VP2)

5 entries

Bovine polyomavirus (BPyV)

Select_all Deselect_all  
AGNO_POVBOBovine agnoprotein (Agno)
LT_POVBOLarge T antigen (LT) (LT-AG) (EC 3.6.4.-)
ST_POVBOSmall t antigen (ST) (ST-AG)
VP1_POVBOMajor capsid protein VP1 (Major structural protein VP1)
VP2_POVBOMinor capsid protein VP2 (Minor structural protein VP2)

5 entries

JC polyomavirus (JCPyV) (JCV)

Select_all Deselect_all  
AGNO_POVJCAgnoprotein (Agno)
LT_POVJCLarge T antigen (LT) (LT-AG) (EC 3.6.4.-)
ST_POVJCSmall t antigen (ST) (ST-AG)
VP1_POVJCMajor capsid protein VP1 (Major structural protein VP1)
VP2_POVJCMinor capsid protein VP2 (Minor structural protein VP2)

5 entries

Murine polyomavirus (strain A2) (MPyV)

Select_all Deselect_all  
LT_POVMALarge T antigen (LT) (LT-AG) (EC 3.6.4.-)
MT_POVMAMiddle T antigen (MT) (MT-AG)
ST_POVMASmall t antigen (ST) (ST-AG)
VP1_POVMAMajor capsid protein VP1 (Major structural protein VP1)
VP2_POVMAMinor capsid protein VP2 (Minor structural protein VP2)

5 entries

Murine polyomavirus (strain Crawford small-plaque) (MPyV)

Select_all Deselect_all  
LT_POVMCLarge T antigen (LT) (LT-AG) (EC 3.6.4.-)
MT_POVMCMiddle T antigen (MT) (MT-AG)
ST_POVMCSmall t antigen (ST) (ST-AG)
VP1_POVMCMajor capsid protein VP1 (Major structural protein VP1)
VP2_POVMCMinor capsid protein VP2 (Minor structural protein VP2)

4 entries

Hamster polyomavirus (HaPyV)

Select_all Deselect_all  
LT_POVHALarge T antigen (LT) (LT-AG) (EC 3.6.4.-)
MT_POVHAMiddle T antigen (MT) (MT-AG)
ST_POVHASmall t antigen (ST) (ST-AG)
VP2_POVHAMinor capsid protein VP2 (Minor structural protein VP2)

4 entries

Murine polyomavirus (strain 3) (MPyV)

Select_all Deselect_all  
LT_POVM3Large T antigen (LT) (LT-AG) (EC 3.6.4.-)
MT_POVM3Middle T antigen (MT) (MT-AG)
ST_POVM3Small t antigen (ST) (ST-AG)
VP2_POVM3Minor capsid protein VP2 (Minor structural protein VP2)