Phenuiviridae (taxid:1980418)

VIRION

image

Enveloped, spherical. Diameter from 80 to 120nm. Glycoproteins at the surface of the envelope are arranged on an icosahedral lattice, with T=12 symmetry.

GENOME

image

Segmented Negative-stranded RNA linear genome, L segment is about 6.4kb, M segment about 3.2kb and S segment about 1.7kb.
Encodes for six proteins.

GENE EXPRESSION

Transcription starts by viral RNA dependent RNA polymerase (L) binding to a promoter on each encapsidated segment, and is terminated by a strong hairpin sequence at the end of each gene. These are capped by L protein during synthesis using cap snatching , but are not polyadenylated.
S segment uses ambisense strategy to encode for several proteins: both genomic and antigenomic RNA are transcribed. The hairpin sequence is a stop polymerase signal which prevents ambisense transcription from producing dsRNA. M segment encodes for several polyproteins by leaky scanning, which are cleaved by host protease into Nsm-GN, Nsm, NSm',Gn and Gc proteins.

ENZYMES

REPLICATION

CYTOPLASMIC

  1. Virus attaches to host receptors though Gn-Gc glycoprotein dimer, and is endocytosed into vesicles in the host cell.
  2. Fusion of virus membrane with the vesicle membrane; ribonucleocapsid segments are released in the cytoplasm.
  3. Transcription, viral mRNAs are capped in the cytoplasm.
  4. Replication presumably starts when enough nucleoprotein is present to encapsidate neo-synthetized antigenomes and genomes.
  5. The ribonucleocapsids buds at Golgi apparatus, releasing the virion by exocytosis.

Host-virus interaction

Inhibition of host transcription initiation

The Rift valley fever virus NSs protein instead plays a role in the inhibition of the host transcription initiation by acting on host TFIIH.

Matching UniProtKB/Swiss-Prot entries

(all links/actions below point to uniprot.org website)

47 entries grouped by strain

7 entries

Rice stripe virus (isolate T) (RSV) reference strain

Select_allDeselect_all
L_RSVT RNA-directed RNA polymerase L (Protein L) (EC 2.7.7.48) (Large structural protein) (Replicase) ...
VSR_RSVT Suppressor of RNA silencing p3 (Protein NS3) (Protein p3)
NCAP_RSVT Nucleoprotein (Coat protein) (CP) (Nucleocapsid protein) (Protein N) (Protein pc3)
MVP_RSVT Movement protein (Non-structural protein 4) (NS4) (Protein pc4)
NCP_RSVT Major non-capsid protein (NCP) (20.5 kDa protein) (Protein p4) (Stripe disease-specific protein) ...
GLYC_RSVT Putative envelope glycoprotein (GP) (Protein pc2) [Cleaved into: Putative glycoprotein G1; Putative ...
P2_RSVT Protein p2

4 entries

Rift valley fever virus (strain ZH-548 M12) (RVFV) reference strain

Select_allDeselect_all
GP_RVFVZ Envelopment polyprotein (M polyprotein) [Cleaved into: NSm-Gn protein (p78); Glycoprotein N (Gn) ...
NSS_RVFVZ Non-structural protein S (NSs)
L_RVFVZ RNA-directed RNA polymerase L (Protein L) (EC 2.7.7.48) (Large structural protein) (Replicase) ...
NCAP_RVFVZ Nucleoprotein (Nucleocapsid protein) (Protein N)

4 entries

Uukuniemi virus (strain S23) (UUKV) reference strain

Select_allDeselect_all
GP_UUKS Envelopment polyprotein (M polyprotein) (p110) [Cleaved into: Glycoprotein N (Gn) (Glycoprotein G1); ...
L_UUKS RNA-directed RNA polymerase L (Protein L) (EC 2.7.7.48) (Large structural protein) (Replicase) ...
NCAP_UUKS Nucleoprotein (Nucleocapsid protein) (Protein N)
NSS_UUKS Non-structural protein NS-S (NSs)

3 entries

SFTS phlebovirus (isolate SFTSV/Human/China/HB29/2010) (Severe fever with thrombocytopenia virus) reference strain

Select_allDeselect_all
GP_SFTSV Envelopment polyprotein (M polyprotein) [Cleaved into: Glycoprotein N (Gn) (Glycoprotein G1); ...
NSS_SFTSV Non-structural protein NS-S (NSs)
NCAP_SFTSV Nucleoprotein (Nucleocapsid protein) (Protein N)

3 entries

Toscana virus (Tos) reference strain

Select_allDeselect_all
L_TOSV RNA-directed RNA polymerase L (Protein L) (EC 2.7.7.48) (Large structural protein) (Replicase) ...
NCAP_TOSV Nucleoprotein (Nucleocapsid protein) (Protein N)
NSS_TOSV Non-structural protein NS-S (NSs)

1 entry

Bhanja virus (BHAV) reference strain

GP_BHAV Envelopment polyprotein (M polyprotein) [Cleaved into: Glycoprotein N (Gn) (Glycoprotein G1); ...

5 entries

Maize stripe virus (MStV)

Select_allDeselect_all
NCAP_MSTV Nucleoprotein (Coat protein) (CP) (Nucleocapsid protein) (Protein N) (Protein pc3)
VSR_MSTV Suppressor of RNA silencing p3 (Protein NS3) (Protein p3)
MVP_MSTV Movement protein (Non-structural protein 4) (NS4) (Protein pc4)
NCP_MSTV Major non-capsid protein (NCP) (Protein p4) (Stripe disease-specific protein) (Protein S)
VNS5_MSTV Non-structural protein NS5

4 entries

Rice stripe virus (isolate M) (RSV)

Select_allDeselect_all
MVP_RSVM Movement protein (Non-structural protein 4) (NS4) (Protein pc4)
NCAP_RSVM Nucleoprotein (Coat protein) (CP) (Nucleocapsid protein) (Protein N) (Protein pc3)
NCP_RSVM Major non-capsid protein (NCP) (20.5 kDa protein) (Protein p4) (Stripe disease-specific protein) ...
VSR_RSVM Suppressor of RNA silencing p3 (Protein NS3) (Protein p3)

3 entries

Dabie bandavirus (Severe fever with thrombocytopenia virus) (Huaiyangshan banyangvirus)

Select_allDeselect_all
L_SFTS RNA-directed RNA polymerase L (Protein L) (EC 2.7.7.48) (Large structural protein) (Replicase) ...
GP_SFTS Envelopment polyprotein (M polyprotein) [Cleaved into: Glycoprotein N (Gn) (Glycoprotein G1); ...
NCAP_SFTS Nucleoprotein (Nucleocapsid protein) (Protein N)

3 entries

Heartland virus (HTRV)

Select_allDeselect_all
L_HTRV RNA-directed RNA polymerase L (Protein L) (EC 2.7.7.48) (Large structural protein) (Replicase) ...
GP_HTRV Envelopment polyprotein (M polyprotein) [Cleaved into: Glycoprotein N (Gn) (Glycoprotein G1); ...
NSS_HTRV Non-structural protein NS-S (NSs)

3 entries

Punta toro phlebovirus

Select_allDeselect_all
GP_PTPV Envelopment polyprotein (M polyprotein) [Cleaved into: NSm-Gn protein; Glycoprotein N (Gn) ...
NCAP_PTPV Nucleoprotein (Nucleocapsid protein) (Protein N)
NSS_PTPV Non-structural protein NS-S

3 entries

Rift valley fever virus (RVFV)

Select_allDeselect_all
L_RVFV RNA-directed RNA polymerase L (Protein L) (EC 2.7.7.48) (Large structural protein) (Replicase) ...
NCAP_RVFV Nucleoprotein (Nucleocapsid protein) (Protein N)
GP_RVFV Envelopment polyprotein (M polyprotein) [Cleaved into: NSm-Gn protein; Glycoprotein N (Gn) ...

2 entries

Sandfly fever sicilian virus (SFS)

Select_allDeselect_all
NCAP_SFSV Nucleoprotein (Nucleocapsid protein) (Protein N)
NSS_SFSV Non-structural protein NS-S

1 entry

Rice hoja blanca virus (strain cr) (RHBV) (Rice hoja blanca virus (strain Costa Rica))

VSR_RHBVC Suppressor of RNA silencing p3 (Protein NS3) (Protein p3)

1 entry

Wheat yellow head virus (WYHV)

NCAP_WYHV Nucleoprotein (Coat protein) (CP) (Nucleocapsid protein) (Protein N) (Protein pc3)
These structures were created with the help of Colabfold by Jason Nomburg, Nathan Price and Jennifer Doudna (ModelArchive).

Adana virus taxid:1611877

Protein ModelArchive
Envelopment polyprotein (M polyprotein) ma-jd-viral-61252
Nonstructural protein ma-jd-viral-25090
Nucleoprotein ma-jd-viral-17413

Aguacate virus taxid:1006583

Protein ModelArchive
Envelopment polyprotein (M polyprotein) ma-jd-viral-61239
Nonstructural protein ma-jd-viral-25114
Nucleoprotein ma-jd-viral-17406

Bhanja virus taxid:1213620

Protein ModelArchive
Envelopment polyprotein (M polyprotein) ma-jd-viral-66157
Nonstructural protein ma-jd-viral-25080
Nucleoprotein (Nucleocapsid protein) ma-jd-viral-17416

Chandiru virus taxid:629725

Protein ModelArchive
Nonstructural protein ma-jd-viral-25084
Nucleoprotein ma-jd-viral-17405

Heartland virus taxid:1216928

Protein ModelArchive
Non-structural protein NS-S (NSs) ma-jd-viral-25076
Nucleoprotein (Nucleocapsid protein) ma-jd-viral-17444

Huangpi Tick Virus 2 taxid:1608048

Protein ModelArchive
Envelopment polyprotein (M polyprotein) ma-jd-viral-66159
Nonstructural protein ma-jd-viral-25063
Nucleoprotein ma-jd-viral-17382

Hubei diptera virus 3 taxid:1922884

Protein ModelArchive
Nucleoprotein (Nucleocapsid protein) ma-jd-viral-65458
Putative glycoprotein ma-jd-viral-66146

Hubei diptera virus 4 taxid:1922885

Protein ModelArchive
Nucleoprotein (Nucleocapsid protein) ma-jd-viral-17459
Putative glycoprotein ma-jd-viral-66153

Hubei diptera virus 5 taxid:1922886

Protein ModelArchive
Envelopment polyprotein (M polyprotein) ma-jd-viral-63990
Nucleoprotein (Nucleocapsid protein) ma-jd-viral-17463

Hubei lepidoptera virus 1 taxid:1922903

Protein ModelArchive
Nucleoprotein (Nucleocapsid protein) ma-jd-viral-17380
Putative glycoprotein ma-jd-viral-48436

Hunter Island virus taxid:1457386

Protein ModelArchive
Envelopment polyprotein (M polyprotein) ma-jd-viral-66150
Nonstructural protein (Nucleoprotein) ma-jd-viral-25078
Nucleoprotein (Nucleocapsid protein) ma-jd-viral-17443

Lone Star virus taxid:1219465

Protein ModelArchive
Envelopment polyprotein (M polyprotein) ma-jd-viral-66163
Nonstructural S protein ma-jd-viral-25081
Nucleoprotein (Nucleocapsid protein) ma-jd-viral-17396

Rift valley fever virus taxid:11588

Protein ModelArchive
Nucleoprotein ma-jd-viral-17430
Nucleoprotein (Nucleocapsid protein) ma-jd-viral-17430
Nucleoprotein (Nucleocapsid protein) ma-jd-viral-17430
Nucleoprotein (Nucleocapsid protein) ma-jd-viral-17430
Nucleoprotein (Nucleocapsid protein) ma-jd-viral-17430

Rift valley fever virus (strain ZH-548 M12) taxid:11589

Protein ModelArchive
Non-structural protein NS-S ma-jd-viral-25083
Non-structural protein S (NSs) ma-jd-viral-25083
Nucleoprotein ma-jd-viral-17430

SFTS phlebovirus (isolate SFTSV/Human/China/HB29/2010) taxid:992212

Protein ModelArchive
Non-structural protein NS-S (NSs) ma-jd-viral-25077
Nucleoprotein (Nucleocapsid protein) ma-jd-viral-17414
Nucleoprotein (Nucleocapsid protein) ma-jd-viral-17414
Nucleoprotein (Nucleocapsid protein) (Protein N) ma-jd-viral-17414

Sandfly fever Naples virus taxid:206160

Protein ModelArchive
Nucleoprotein (Nucleocapsid protein) ma-jd-viral-17426

Tenuivirus oryzabrevis taxid:3052762

Protein ModelArchive
20.6K nonstructural protein (Disease-specific protein) (Noncapsid protein) (p6v... ma-jd-viral-33897
21.6K protein (NS5) ma-jd-viral-60236
36.4K protein ma-jd-viral-27849
Nucleoprotein (Nucleocapsid protein) ma-jd-viral-17454

Wenzhou Shrimp Virus 1 taxid:1608095

Protein ModelArchive
Envelopment polyprotein (M polyprotein) ma-jd-viral-66156
Nucleoprotein (Nucleocapsid protein) ma-jd-viral-17391

Wuhan Fly Virus 1 taxid:1608101

Protein ModelArchive
Glycoprotein ma-jd-viral-63993
Nucleoprotein (Nucleocapsid protein) ma-jd-viral-17458

Wuhan horsefly Virus taxid:1608139

Protein ModelArchive
Glycoprotein ma-jd-viral-53013
Nonstructural protein ma-jd-viral-38613
Nucleoprotein (Nucleocapsid protein) ma-jd-viral-17456

Yichang Insect virus taxid:1608144

Protein ModelArchive
Envelopment polyprotein (M polyprotein) ma-jd-viral-66152
Nucleoprotein (Nucleocapsid protein) ma-jd-viral-17411

sandfly fever Turkey virus taxid:688699

Protein ModelArchive
Non-structural protein NS-S ma-jd-viral-25101
Nucleoprotein ma-jd-viral-17420