Clathrin-mediated endocytosis of virus by host

fusion lysis permeabilisation

Clathrin-mediated endoycytosis (CME) is triggered by the binding of the virion to host receptors. The virion attachment to the host receptor induces the binding of an adaptor protein to the receptor cytoplasmic tail. Adaptor proteins bind to clathrin, and the local concentration of adaptor proteins on the inside face of the plasma membrane allows clathrin to multimerize to form characteristic invaginations or Clathrin-Coated Pit (CCP). Membrane scission proteins DNM1/Dynamin-1 or DNM2/Dynamin-2 pinch off the CCP from the host membrane thereby releasing the Clathrin-Coated Vesicle (CCV).
The clathrin basket is subsequently released from the vesicle by auxilin and hsc70. The vesicle then delivers its viral content to early endosomes. Endosomal acidic pH and /or receptor binding usually induces structural modifications of the virus surface proteins that leads to genome penetration into the cytoplasm via fusion or permeabilization mechanisms.

Matching UniProtKB/Swiss-Prot entries

387 entries grouped by protein (browse by keywords)

36 entries

Capsid protein VP1 (Coat protein VP1)

Select_allDeselect_all
CAPSD_AADNV
Aedes albopictus densovirus (isolate Boublik/1994) (AalDNV) reference strain

Capsid protein VP1/VP2 (Coat protein VP1/VP2)

CAPSD_AAV2S
Adeno-associated virus 2 (isolate Srivastava/1982) (AAV-2) reference strain

Capsid protein VP1

CAPSD_ADVG
Aleutian mink disease parvovirus (strain G) (ADV) reference strain

Capsid protein VP1

CAPSD_HASV1
Human astrovirus-1 (HAstV-1) reference strain

Capsid polyprotein VP90

CAPSD_JDNVP
Junonia coenia densovirus (isolate pBRJ/1990) (JcDNV) reference strain

Capsid protein VP1 (Coat protein VP1) (Structural protein VP1)

CAPSD_MUMIP
Murine minute virus (strain MVM prototype) (MVM) (Murine minute virus (strain MVM(p))) reference strain
CAPSD_PAVBP
Bovine parvovirus (isolate pAT153/1986) (BPV) reference strain

Minor capsid protein VP1 (EC 3.1.1.4)

CAPSD_PAVHV
Human parvovirus B19 (strain HV) (HPV B19) reference strain

Minor capsid protein VP1 (EC 3.1.1.4) (Coat protein VP1)

CAPSD_AEDEV
Aedes densonucleosis virus (strain GKV 002 002) (Aedes densovirus)

Capsid protein VP1/VP2 (Coat protein VP1/VP2)

CAPSD_DSDNV
Diatraea saccharalis densovirus (DsDNV)

Capsid protein VP1 (Coat protein VP1) (Structural protein VP1)

CAPSD_FPV
Feline panleukopenia virus (FPV)
CAPSD_FPV19
Feline panleukopenia virus (strain 193) (FPV)
CAPSD_GMDNV
Galleria mellonella densovirus (GmDNV)

Capsid protein VP1 (Coat protein VP1) (Structural protein VP1)

CAPSD_HASV2
Human astrovirus-2 (HAstV-2)

Capsid polyprotein VP90

CAPSD_HASV3
Human astrovirus-3 (HAstV-3)

Capsid polyprotein VP90

CAPSD_HASV4
Human astrovirus-4 (HAstV-4)

Capsid polyprotein VP90

CAPSD_HASV5
Human astrovirus-5 (HAstV-5)

Capsid polyprotein VP90

CAPSD_HASV6
Human astrovirus-6 (HAstV-6)

Capsid polyprotein VP90

CAPSD_HASV7
Human astrovirus-7 (HAstV-7)

Capsid polyprotein VP90

CAPSD_HASV8
Human astrovirus-8 (HAstV-8)

Capsid polyprotein VP90

CAPSD_MASV1
Mink astrovirus 1 (MAstV-1)

Capsid polyprotein VP90

CAPSD_MEVA
Mink enteritis virus (strain Abashiri) (MEV)
CAPSD_MUMIM
Murine minute virus (strain MVMi) (MVM) (Murine parvovirus)
CAPSD_OASV1
Ovine astrovirus 1 (OAstV-1)

Capsid polyprotein VP90

CAPSD_PASV1
Porcine astrovirus 1 (PAstV-1)

Capsid polyprotein VP90

CAPSD_PAVC
Canine parvovirus type 2 (CPV-2)

Capsid protein VP2 (Coat protein VP2)

CAPSD_PAVC7
Canine parvovirus type 2 (strain Dog/United States/780929/-) (CPV-2)
CAPSD_PAVCB
Canine parvovirus type 2 (isolate Dog/United States/CPV-b/1978) (CPV-2)
CAPSD_PAVCD
Canine parvovirustype 2 (isolate Dog/United States/CPV-d/1988) (CPV-2)
CAPSD_PAVCN
Canine parvovirus type 2 (isolate Dog/United States/CPV-N/1978) (CPV-2)
CAPSD_PAVHH
Hamster parvovirus H1
CAPSD_PAVHU
Human parvovirus B19 (isolate AU) (HPV B19)

Minor capsid protein VP1 (EC 3.1.1.4) (Coat protein VP1)

CAPSD_PAVL3
Parvovirus LuIII
CAPSD_PAVP9
Porcine parvovirus (strain 90HS) (PPV)
CAPSD_PAVPK
Porcine parvovirus (strain Kresse) (PPV)
CAPSD_PAVPN
Porcine parvovirus (strain NADL-2) (PPV)

3 entries

Penton protein (CP-P) (Penton base protein) (Protein III)

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CAPSP_ADE02
Human adenovirus C serotype 2 (HAdV-2) (Human adenovirus 2) reference strain
CAPSP_ADE05
Human adenovirus C serotype 5 (HAdV-5) (Human adenovirus 5) reference strain
CAPSP_ADE12
Human adenovirus A serotype 12 (HAdV-12) (Human adenovirus 12)

65 entries

Envelope glycoprotein gp160 (Env polyprotein)

Select_allDeselect_all
ENV_HV192
Human immunodeficiency virus type 1 group M subtype C (isolate 92BR025) (HIV-1) reference strain
ENV_HV193
Human immunodeficiency virus type 1 group M subtype F1 (isolate 93BR020) (HIV-1) reference strain
ENV_HV1A2
Human immunodeficiency virus type 1 group M subtype B (isolate ARV2/SF2) (HIV-1) reference strain
ENV_HV1AN
Human immunodeficiency virus type 1 group O (isolate ANT70) (HIV-1) reference strain
ENV_HV1B9
Human immunodeficiency virus type 1 group M subtype B (strain 89.6) (HIV-1) reference strain
ENV_HV1BR
Human immunodeficiency virus type 1 group M subtype B (isolate BRU/LAI) (HIV-1) reference strain
ENV_HV1H2
Human immunodeficiency virus type 1 group M subtype B (isolate HXB2) (HIV-1) reference strain
ENV_HV1JR
Human immunodeficiency virus type 1 group M subtype B (isolate JRCSF) (HIV-1) reference strain
ENV_HV1MA
Human immunodeficiency virus type 1 group M subtype A (isolate MAL) (HIV-1) reference strain
ENV_HV1RH
Human immunodeficiency virus type 1 group M subtype B (isolate RF/HAT3) (HIV-1) reference strain
ENV_HV1Y2
Human immunodeficiency virus type 1 group M subtype B (isolate YU-2) (HIV-1) reference strain
ENV_HV1YB
Human immunodeficiency virus type 1 group N (isolate YBF106) (HIV-1) reference strain
ENV_HV1YF
Human immunodeficiency virus type 1 group N (isolate YBF30) (HIV-1) reference strain
ENV_HV2BE
Human immunodeficiency virus type 2 subtype A (isolate BEN) (HIV-2) reference strain
ENV_HV2G1
Human immunodeficiency virus type 2 subtype A (isolate Ghana-1) (HIV-2) reference strain
ENV_HV2RO
Human immunodeficiency virus type 2 subtype A (isolate ROD) (HIV-2) reference strain
ENV_HV2UC
Human immunodeficiency virus type 2 subtype B (isolate UC1) (HIV-2) reference strain
ENV_SIVCZ
Simian immunodeficiency virus (isolate CPZ GAB1) (SIV-cpz) (Chimpanzee immunodeficiency virus) reference strain
ENV_SIVEK
Simian immunodeficiency virus (isolate EK505) (SIV-cpz) (Chimpanzee immunodeficiency virus) reference strain
ENV_SIVMB
Simian immunodeficiency virus (isolate MB66) (SIV-cpz) (Chimpanzee immunodeficiency virus) reference strain
ENV_HV190
Human immunodeficiency virus type 1 group M subtype H (isolate 90CF056) (HIV-1)
ENV_HV196
Human immunodeficiency virus type 1 group M subtype K (isolate 96CM-MP535) (HIV-1)
ENV_HV197
Human immunodeficiency virus type 1 group M subtype K (isolate 97ZR-EQTB11) (HIV-1)
ENV_HV19N
Human immunodeficiency virus type 1 group M subtype G (isolate 92NG083) (HIV-1)
ENV_HV1B1
Human immunodeficiency virus type 1 group M subtype B (isolate BH10) (HIV-1)
ENV_HV1B8
Human immunodeficiency virus type 1 group M subtype B (isolate BH8) (HIV-1)
ENV_HV1BN
Human immunodeficiency virus type 1 group M subtype B (isolate BRVA) (HIV-1)
ENV_HV1C4
Human immunodeficiency virus type 1 group M subtype B (isolate CDC-451) (HIV-1)
ENV_HV1EL
Human immunodeficiency virus type 1 group M subtype D (isolate ELI) (HIV-1)
ENV_HV1ET
Human immunodeficiency virus type 1 group M subtype C (isolate ETH2220) (HIV-1)
ENV_HV1H3
Human immunodeficiency virus type 1 group M subtype B (isolate HXB3) (HIV-1)
ENV_HV1J3
Human immunodeficiency virus type 1 group M subtype B (isolate JH32) (HIV-1)
ENV_HV1KB
Human immunodeficiency virus type 1 group M subtype B (isolate KB-1/ETR) (HIV-1)
ENV_HV1LW
Human immunodeficiency virus type 1 group M subtype B (isolate LW123) (HIV-1)
ENV_HV1M2
Human immunodeficiency virus type 1 group M subtype F2 (isolate MP257) (HIV-1)
ENV_HV1MF
Human immunodeficiency virus type 1 group M subtype B (isolate MFA) (HIV-1)
ENV_HV1MN
Human immunodeficiency virus type 1 group M subtype B (isolate MN) (HIV-1)
ENV_HV1MP
Human immunodeficiency virus type 1 group M subtype F2 (isolate MP255) (HIV-1)
ENV_HV1MV
Human immunodeficiency virus type 1 group O (isolate MVP5180) (HIV-1)
ENV_HV1N5
Human immunodeficiency virus type 1 group M subtype B (isolate NY5) (HIV-1)

Truncated surface protein (SU) (Glycoprotein 120) (gp120)

ENV_HV1ND
Human immunodeficiency virus type 1 group M subtype D (isolate NDK) (HIV-1)
ENV_HV1OY
Human immunodeficiency virus type 1 group M subtype B (isolate OYI) (HIV-1)
ENV_HV1S1
Human immunodeficiency virus type 1 group M subtype B (isolate SF162) (HIV-1)
ENV_HV1S2
Human immunodeficiency virus type 1 group M subtype J (isolate SE9280) (HIV-1)
ENV_HV1S3
Human immunodeficiency virus type 1 group M subtype B (isolate SF33) (HIV-1)
ENV_HV1S9
Human immunodeficiency virus type 1 group M subtype J (isolate SE9173) (HIV-1)
ENV_HV1SC
Human immunodeficiency virus type 1 group M subtype B (isolate SC) (HIV-1)
ENV_HV1V9
Human immunodeficiency virus type 1 group M subtype H (isolate VI991) (HIV-1)
ENV_HV1VI
Human immunodeficiency virus type 1 group M subtype F1 (isolate VI850) (HIV-1)
ENV_HV1W1
Human immunodeficiency virus type 1 group M subtype B (isolate WMJ1) (HIV-1)
ENV_HV1W2
Human immunodeficiency virus type 1 group M subtype B (isolate WMJ22) (HIV-1)
ENV_HV1Z2
Human immunodeficiency virus type 1 group M subtype D (isolate Z2/CDC-Z34) (HIV-1)
ENV_HV1Z3
Human immunodeficiency virus type 1 group M subtype U (isolate Z3) (HIV-1)

Truncated surface protein (SU) (Glycoprotein 120) (gp120)

ENV_HV1Z6
Human immunodeficiency virus type 1 group M subtype D (isolate Z6) (HIV-1)
ENV_HV1Z8
Human immunodeficiency virus type 1 group M subtype D (isolate Z84) (HIV-1)
ENV_HV1ZH
Human immunodeficiency virus type 1 group M subtype A (isolate Z321) (HIV-1)
ENV_HV2CA
Human immunodeficiency virus type 2 subtype A (isolate CAM2) (HIV-2)
ENV_HV2D1
Human immunodeficiency virus type 2 subtype A (isolate D194) (HIV-2)
ENV_HV2D2
Human immunodeficiency virus type 2 subtype B (isolate D205) (HIV-2)
ENV_HV2EH
Human immunodeficiency virus type 2 subtype B (isolate EHO) (HIV-2)
ENV_HV2KR
Human immunodeficiency virus type 2 subtype A (isolate KR) (HIV-2)
ENV_HV2NZ
Human immunodeficiency virus type 2 subtype A (isolate NIH-Z) (HIV-2)
ENV_HV2S2
Human immunodeficiency virus type 2 subtype A (isolate ST/24.1C#2) (HIV-2)
ENV_HV2SB
Human immunodeficiency virus type 2 subtype A (isolate SBLISY) (HIV-2)
ENV_HV2ST
Human immunodeficiency virus type 2 subtype A (isolate ST) (HIV-2)

11 entries

Glycoprotein

Select_allDeselect_all
GLYCO_DMSVA
Drosophila melanogaster sigma virus (isolate Drosophila/USA/AP30/2005) (DMelSV) reference strain
GLYCO_SVCV
Spring viremia of carp virus (Rhabdovirus carpia) reference strain
GLYCO_TIBVC
Tibrogargan virus (strain CS132) (TIBV) reference strain
GLYCO_TUPVT
Tupaia virus (isolate Tupaia/Thailand/-/1986) (TUPV) reference strain
GLYCO_VSIVA
Vesicular stomatitis Indiana virus (strain San Juan) (VSIV) reference strain
GLYCO_VSIVG
Vesicular stomatitis Indiana virus (strain Glasgow) (VSIV) reference strain
GLYCO_VSNJO
Vesicular stomatitis New Jersey virus (strain Ogden subtype Concan) (VSNJV) reference strain
GLYCO_VSIVC
Vesicular stomatitis Indiana virus (strain 94GUB Central America) (VSIV)
GLYCO_VSIVN
Vesicular stomatitis Indiana virus (strain 98COE North America) (VSIV)
GLYCO_VSIVO
Vesicular stomatitis Indiana virus (strain Orsay) (VSIV)
GLYCO_VSIVS
Vesicular stomatitis Indiana virus (strain 85CLB South America) (VSIV)

1 entry

Glycoprotein G

GLYCP_NIPAV
Nipah virus reference strain

1 entry

Envelopment polyprotein (M polyprotein)

GP_CCHFI
Crimean-Congo hemorrhagic fever virus (strain Nigeria/IbAr10200/1970) (CCHFV) reference strain

1 entry

Glycoprotein 2b (Protein GP2b) (GP(S))

GP2B_EAVBU
Equine arteritis virus (strain Bucyrus) (EAV) reference strain

1 entry

Glycoprotein 3 (Protein GP3)

GP3_EAVBU
Equine arteritis virus (strain Bucyrus) (EAV) reference strain

1 entry

Glycoprotein 4 (Protein GP4)

GP4_EAVBU
Equine arteritis virus (strain Bucyrus) (EAV) reference strain

2 entries

Glycoprotein 5 (Protein GP5) (G(L))

Select_allDeselect_all
GP5_PRRSL
Porcine reproductive and respiratory syndrome virus (strain Lelystad) (PRRSV) reference strain
GP5_PRRSS
Porcine reproductive and respiratory syndrome virus (isolate Pig/United States/SD 01-08/2001) (PRRSV)

124 entries

Hemagglutinin

Select_allDeselect_all
HEMA_I34A1
Influenza A virus (strain A/Puerto Rico/8/1934 H1N1) reference strain
HEMA_I80A8
Influenza A virus (strain A/Turkey/Minnesota/833/1980 H4N2) reference strain
HEMA_I80AD
Influenza A virus (strain A/Gull/Minnesota/945/1980 H13N6) reference strain
HEMA_I96A0
Influenza A virus (strain A/Goose/Guangdong/1/1996 H5N1 genotype Gs/Gd) reference strain
HEMA_I000F
Influenza A virus (strain A/Chicken/Weybridge H7N7) (Influenza A virus (strain A/FPV/Weybridge H7N7))
HEMA_I000X
Influenza A virus (strain A/X-31 H3N2)
HEMA_I00A0
Influenza A virus (strain A/Duck/Hong Kong/2986.1/2000 H5N1 genotype C)
HEMA_I00A1
Influenza A virus (strain A/New Zealand:South Canterbury/35/2000 H1N1)
HEMA_I06A0
Influenza A virus (strain A/Russia:St.Petersburg/8/2006 H1N1)
HEMA_I07A0
Influenza A virus (strain A/USA:Texas/UR06-0195/2007 H1N1)
HEMA_I18A0
Influenza A virus (strain A/Brevig Mission/1/1918 H1N1) (Influenza A virus (strain A/South Carolina/1/1918 H1N1))
HEMA_I30A0
Influenza A virus (strain A/Swine/Iowa/15/1930 H1N1)
HEMA_I33A0
Influenza A virus (strain A/Wilson-Smith/1933 H1N1) (Influenza A virus (strain A/WS/1933 H1N1))
HEMA_I34A0
Influenza A virus (strain A/Fowl plague virus/Rostock/8/1934 H7N1)
HEMA_I35A3
Influenza A virus (strain A/USA:Phila/1935 H1N1)
HEMA_I36A0
Influenza A virus (strain A/Henry/1936 H1N1)
HEMA_I40A0
Influenza A virus (strain A/Hickox/1940 H1N1)
HEMA_I43A0
Influenza A virus (strain A/USA:Iowa/1943 H1N1)
HEMA_I45A0
Influenza A virus (strain A/USA:Huston/AA/1945 H1N1)
HEMA_I49A0
Influenza A virus (strain A/Chicken/Germany/n/1949 H10N7)
HEMA_I49A1
Influenza A virus (strain A/Duck/Germany/1949 H10N7)
HEMA_I51A0
Influenza A virus (strain A/USA:Albany/12/1951 H1N1)
HEMA_I54A0
Influenza A virus (strain A/Leningrad/1/1954 H1N1)
HEMA_I54A2
Influenza A virus (strain A/Malaysia:Malaya/302/1954 H1N1)
HEMA_I56A1
Influenza A virus (strain A/Duck/Czechoslovakia/1956 H4N6)
HEMA_I56A2
Influenza A virus (strain A/Duck/England/1/1956 H11N6)
HEMA_I56A3
Influenza A virus (strain A/Equine/Prague/1/1956 H7N7)
HEMA_I57A0
Influenza A virus (strain A/Japan/305/1957 H2N2)
HEMA_I57A5
Influenza A virus (strain A/Singapore/1/1957 H2N2)
HEMA_I59A0
Influenza A virus (strain A/Chicken/Scotland/1959 H5N1)
HEMA_I61A0
Influenza A virus (strain A/Tern/South Africa/1961 H5N3)
HEMA_I61A1
Influenza A virus (strain A/Swine/Wisconsin/1/1961 H1N1)
HEMA_I63A0
Influenza A virus (strain A/Equine/Cambridge/1/1963 H7N7)
HEMA_I63A2
Influenza A virus (strain A/Equine/Miami/1/1963 H3N8)
HEMA_I63A3
Influenza A virus (strain A/Duck/Ukraine/1/1963 H3N8)
HEMA_I63A4
Influenza A virus (strain A/Equine/Uruguay/1/1963 H3N8)
HEMA_I64A5
Influenza A virus (strain A/Equine/C.Detroit/1/1964 H7N7)
HEMA_I64A6
Influenza A virus (strain A/Equine/Detroit/1/1964 H7N7)
HEMA_I66A0
Influenza A virus (strain A/Turkey/Ontario/7732/1966 H5N9)
HEMA_I66A1
Influenza A virus (strain A/Turkey/Wisconsin/1/1966 H9N2)
HEMA_I66A2
Influenza A virus (strain A/Equine/Lexington/1/1966 H7N7)
HEMA_I67A2
Influenza A virus (strain A/Swine/Wisconsin/1/1967 H1N1)
HEMA_I68A0
Influenza A virus (strain A/Aichi/2/1968 H3N2)
HEMA_I68A3
Influenza A virus (strain A/Turkey/Ontario/6118/1968 H8N4)
HEMA_I68A4
Influenza A virus (strain A/Hong Kong/1/1968 H3N2)
HEMA_I68A5
Influenza A virus (strain A/Korea/426/1968 H2N2)
HEMA_I68A6
Influenza A virus (strain A/Northern Territory/60/1968 H3N2) (Influenza A virus (strain NT60)) (Influenza A virus (strain A/NT/60/1968 H3N2))
HEMA_I71A1
Influenza A virus (strain A/Memphis/1/1971 H3N2)
HEMA_I71A2
Influenza A virus (strain A/Turkey/Oregon/1971 H7N3)
HEMA_I71A3
Influenza A virus (strain A/Equine/Tokyo/1971 H3N2)
HEMA_I72A0
Influenza A virus (strain A/Equine/Algiers/1972 H3N8)
HEMA_I72A2
Influenza A virus (strain A/Udorn/307/1972 H3N2)
HEMA_I72A3
Influenza A virus (strain A/Memphis/102/1972 H3N2)
HEMA_I72A4
Influenza A virus (strain A/Memphis/101/1972 H3N2)
HEMA_I72A5
Influenza A virus (strain A/Shearwater/Australia/1972 H6N5)
HEMA_I72A7
Influenza A virus (strain A/Equine/Switzerland/137/1972 H7N7)
HEMA_I73A1
Influenza A virus (strain A/Equine/Cambridge/1/1973 H7N7)
HEMA_I73A4
Influenza A virus (strain A/Equine/London/1416/1973 H7N7)
HEMA_I73A5
Influenza A virus (strain A/Port Chalmers/1/1973 H3N2)
HEMA_I74A2
Influenza A virus (strain A/Duck/Memphis/928/1974 H3N8)
HEMA_I75A0
Influenza A virus (strain A/Beijing/39/1975 H3N2)
HEMA_I75A3
Influenza A virus (strain A/Victoria/3/1975 H3N2)
HEMA_I75A4
Influenza A virus (strain A/Chicken/Alabama/1/1975 H4N8)
HEMA_I76A1
Influenza A virus (strain A/Duck/Alberta/28/1976 H4N6)
HEMA_I76A2
Influenza A virus (strain A/Duck/Alberta/60/1976 H12N5)
HEMA_I76A3
Influenza A virus (strain A/Duck/Alberta/78/1976 H3N8)
HEMA_I76A4
Influenza A virus (strain A/Duck/Alberta/35/1976 H1N1)
HEMA_I76A6
Influenza A virus (strain A/Memphis/110/1976 H3N2)
HEMA_I76A8
Influenza A virus (strain A/Equine/Fontainebleau/1976 H3N8) (Influenza A virus (strain A/Equine/France/1/1976 H3N8))
HEMA_I76AI
Influenza A virus (strain A/Swine/New Jersey/11/1976 H1N1)
HEMA_I76AJ
Influenza A virus (strain A/Equine/New Market/1976 H3N8)
HEMA_I76AK
Influenza A virus (strain A/Duck/New Zealand/31/1976 H4N6)
HEMA_I76AL
Influenza A virus (strain A/Equine/Sao Paulo/1/1976 H7N7)
HEMA_I77A4
Influenza A virus (strain A/Swine/Colorado/1/1977 H3N2)
HEMA_I77A8
Influenza A virus (strain A/England/321/1977 H3N2)
HEMA_I77A9
Influenza A virus (strain A/Equine/New Market/1/1977 H7N7)
HEMA_I77AA
Influenza A virus (strain A/Brazil/11/1978 H1N1)
HEMA_I77AB
Influenza A virus (strain A/USSR/90/1977 H1N1)
HEMA_I77AF
Influenza A virus (strain A/Gull/Maryland/704/1977 H13N6)
HEMA_I77AG
Influenza A virus (strain A/Budgerigar/Hokkaido/1/1977 H4N6)
HEMA_I78A3
Influenza A virus (strain A/Mallard/New York/6750/1978 H2N2)
HEMA_I78A4
Influenza A virus (strain A/Mallard/New York/6874/1978 H3N2)
HEMA_I78A7
Influenza A virus (strain A/Memphis/2/1978 H3N2)
HEMA_I78A8
Influenza A virus (strain A/Memphis/18/1978 H3N2)
HEMA_I79A4
Influenza A virus (strain A/Kiev/59/1979 H1N1)
HEMA_I79A7
Influenza A virus (strain A/Grey teal/Australia/2/1979 H4N4)
HEMA_I80A1
Influenza A virus (strain A/Duck/Australia/749/1980 H1N1)
HEMA_I80A2
Influenza A virus (strain A/Seal/Massachusetts/1/1980 H7N7)
HEMA_I80A4
Influenza A virus (strain A/Memphis/4/1980 H3N2)
HEMA_I80A6
Influenza A virus (strain A/Duck/Hokkaido/8/1980 H3N8)
HEMA_I80AA
Influenza A virus (strain A/India/6263/1980 H1N1)
HEMA_I80AB
Influenza A virus (strain A/Equine/Romania/1980 H3N8)
HEMA_I81A2
Influenza A virus (strain A/Equine/Kentucky/1/1981)
HEMA_I81A3
Influenza A virus (strain A/Turkey/Minnesota/1661/1981 H1N1)
HEMA_I82A1
Influenza A virus (strain A/Mallard/Astrakhan/263/1982 H14N5) (Influenza A virus (strain A/Mallard/Gurjev/263/1982 H14N5))
HEMA_I82A3
Influenza A virus (strain A/Seal/Massachusetts/133/1982 H4N5)
HEMA_I83A1
Influenza A virus (strain A/Chile/1/1983 H1N1)
HEMA_I83A3
Influenza A virus (strain A/Duck/Ireland/113/1983 H5N8)
HEMA_I83A4
Influenza A virus (strain A/Turkey/Ireland/1378/1983 H5N8)
HEMA_I83A5
Influenza A virus (strain A/Chicken/Pennsylvania/1/1983 H5N2)
HEMA_I83A8
Influenza A virus (strain A/Hong Kong/5/1983 H3N2)
HEMA_I84A2
Influenza A virus (strain A/Whale/Maine/328/1984 H13N2)
HEMA_I84A3
Influenza A virus (strain A/Mink/Sweden/1984 H10N4)
HEMA_I84A4
Influenza A virus (strain A/Gull/Astrakhan/227/1984 H13N6)
HEMA_I84A5
Influenza A virus (strain A/Swine/Ukkel/1/1984 H3N2)
HEMA_I85A3
Influenza A virus (strain A/Chicken/Victoria/1/1985 H7N7)
HEMA_I85A4
Influenza A virus (strain A/Swine/Netherlands/12/1985 H1N1)
HEMA_I85A5
Influenza A virus (strain A/Equine/Santiago/1/1985 H3N8)
HEMA_I85A6
Influenza A virus (strain A/Starling/Victoria/5156/1985 H7N7)
HEMA_I85A7
Influenza A virus (strain A/Ruddy Turnstone/New Jersey/47/1985 H4N6)
HEMA_I86A1
Influenza A virus (strain A/Memphis/6/1986 H3N2)
HEMA_I86A2
Influenza A virus (strain A/Equine/Kentucky/2/1986 H3N8)
HEMA_I86A3
Influenza A virus (strain A/Equine/Tennessee/5/1986 H3N8)
HEMA_I87A1
Influenza A virus (strain A/Mallard/Ohio/556/1987 H5N9)
HEMA_I87A3
Influenza A virus (strain A/Equine/Kentucky/1/1987 H3N8)
HEMA_I88A4
Influenza A virus (strain A/Herring gull/DE/677/1988 H2N8)
HEMA_I88A6
Influenza A virus (strain A/Swine/Indiana/1726/1988 H1N1)
HEMA_I89A2
Influenza A virus (strain A/Beijing/353/1989 H3N2)
HEMA_I89A7
Influenza A virus (strain A/Equine/Jillin/1/1989 H3N8)
HEMA_I89A8
Influenza A virus (strain A/Equine/Suffolk/1989 H3N8)
HEMA_I96A2
Influenza A virus (strain A/USA:Memphis/10/1996 H1N1)
HEMA_I96A3
Influenza A virus (strain A/China:Nanchang/11/1996 H1N1)
HEMA_I97A0
Influenza A virus (strain A/Chicken/Hong Kong/220/1997 H5N1 genotype Gs/Gd)
HEMA_I97A1
Influenza A virus (strain A/Hong Kong/156/1997 H5N1 genotype Gs/Gd)

96 entries

Genome polyprotein

Select_allDeselect_all
POLG_BVDVN
Bovine viral diarrhea virus (isolate NADL) (BVDV) (Mucosal disease virus) reference strain
POLG_DEN1W
Dengue virus type 1 (strain Nauru/West Pac/1974) (DENV-1) reference strain
POLG_HCV77
Hepatitis C virus genotype 1a (isolate H77) (HCV) reference strain
POLG_YEFV1
Yellow fever virus (strain 17D vaccine) (YFV) reference strain
POLG_BUSV
Bussuquara virus (BUSV)
POLG_BVDVC
Bovine viral diarrhea virus (strain CP7) (BVDV) (Mucosal disease virus)
POLG_BVDVS
Bovine viral diarrhea virus (strain SD-1) (BVDV) (Mucosal disease virus)
POLG_DEN1B
Dengue virus type 1 (strain Brazil/97-11/1997) (DENV-1)
POLG_DEN1S
Dengue virus type 1 (strain Singapore/S275/1990) (DENV-1)
POLG_DEN26
Dengue virus type 2 (strain Thailand/16681/1984) (DENV-2)
POLG_DEN27
Dengue virus type 2 (strain 16681-PDK53) (DENV-2)
POLG_DEN28
Dengue virus type 2 (isolate Thailand/0168/1979) (DENV-2)
POLG_DEN2J
Dengue virus type 2 (strain Jamaica/1409/1983) (DENV-2)
POLG_DEN2N
Dengue virus type 2 (strain Thailand/NGS-C/1944) (DENV-2)
POLG_DEN2P
Dengue virus type 2 (strain Puerto Rico/PR159-S1/1969) (DENV-2)
POLG_DEN2Q
Dengue virus type 2 (strain Peru/IQT2913/1996) (DENV-2)
POLG_DEN3C
Dengue virus type 3 (strain China/80-2/1980) (DENV-3)
POLG_DEN3I
Dengue virus type 3 (strain Singapore/8120/1995) (DENV-3)
POLG_DEN3M
Dengue virus type 3 (strain Martinique/1243/1999) (DENV-3)
POLG_DEN3P
Dengue virus type 3 (strain Philippines/H87/1956) (DENV-3)
POLG_DEN3S
Dengue virus type 3 (strain Sri Lanka/1266/2000) (DENV-3)
POLG_DEN4D
Dengue virus type 4 (strain Dominica/814669/1981) (DENV-4)
POLG_DEN4H
Dengue virus type 4 (strain Thailand/0476/1997) (DENV-4)
POLG_DEN4P
Dengue virus type 4 (strain Philippines/H241/1956) (DENV-4)
POLG_DEN4S
Dengue virus type 4 (strain Singapore/8976/1995) (DENV-4)
POLG_DEN4T
Dengue virus type 4 (strain Thailand/0348/1991) (DENV-4)
POLG_FMDV1
Foot-and-mouth disease virus (strain A10-61) (Aphthovirus A) (FMDV)
POLG_FMDV5
Foot-and-mouth disease virus (isolate -/Germany/A5Westerwald/1951 serotype A) (FMDV)
POLG_FMDVA
Foot-and-mouth disease virus (isolate Bovine/United Kingdom/A12Valle119/1932 serotype A) (FMDV)
POLG_FMDVC
Foot-and-mouth disease virus (isolate Bovine/Brazil/A24Cruzeiro/1955 serotype A) (FMDV)
POLG_FMDVI
Foot-and-mouth disease virus (isolate -/Brazil/C3Indaial/1971 serotype C) (FMDV)
POLG_FMDVO
Foot-and-mouth disease virus (isolate Bovine/Germany/O1Kaufbeuren/1966 serotype O) (FMDV)
POLG_FMDVS
Foot-and-mouth disease virus (isolate -/Spain/S8c1SantaPau/1970 serotype C) (FMDV)
POLG_FMDVT
Foot-and-mouth disease virus (isolate -/Germany/C1Oberbayen/1960 serotype C) (FMDV)
POLG_FMDVZ
Foot-and-mouth disease virus (isolate -/Azerbaijan/A22-550/1965 serotype A) (FMDV)
POLG_HCV1
Hepatitis C virus genotype 1a (isolate 1) (HCV)
POLG_HCV6A
Hepatitis C virus genotype 6a (isolate 6a33) (HCV)
POLG_HCVBB
Hepatitis C virus genotype 2c (isolate BEBE1) (HCV)
POLG_HCVCO
Hepatitis C virus genotype 1b (isolate Con1) (HCV)
POLG_HCVED
Hepatitis C virus genotype 4a (isolate ED43) (HCV)
POLG_HCVEU
Hepatitis C virus genotype 6a (isolate EUHK2) (HCV)
POLG_HCVEV
Hepatitis C virus genotype 5a (isolate EUH1480) (HCV)
POLG_HCVH9
Hepatitis C virus genotype 1c (isolate HC-G9) (HCV)
POLG_HCVIN
Hepatitis C virus genotype 1c (isolate India) (HCV)
POLG_HCVJ1
Hepatitis C virus genotype 1b (isolate HC-J1) (HCV)
POLG_HCVJ4
Hepatitis C virus genotype 1b (strain HC-J4) (HCV)
POLG_HCVJ6
Hepatitis C virus genotype 2a (isolate HC-J6) (HCV)
POLG_HCVJ8
Hepatitis C virus genotype 2b (isolate HC-J8) (HCV)
POLG_HCVJA
Hepatitis C virus genotype 1b (isolate Japanese) (HCV)
POLG_HCVJF
Hepatitis C virus genotype 2a (isolate JFH-1) (HCV)
POLG_HCVJK
Hepatitis C virus genotype 3k (isolate JK049) (HCV)
POLG_HCVJL
Hepatitis C virus genotype 6g (isolate JK046) (HCV)
POLG_HCVJP
Hepatitis C virus genotype 2b (isolate JPUT971017) (HCV)
POLG_HCVJT
Hepatitis C virus genotype 1b (isolate HC-JT) (HCV)
POLG_HCVK3
Hepatitis C virus genotype 3a (isolate k3a) (HCV)
POLG_HCVNZ
Hepatitis C virus genotype 3a (isolate NZL1) (HCV)
POLG_HCVR6
Hepatitis C virus genotype 1b (isolate HCR6) (HCV)
POLG_HCVSA
Hepatitis C virus genotype 5a (isolate SA13) (HCV)
POLG_HCVT5
Hepatitis C virus genotype 6b (isolate Th580) (HCV)
POLG_HCVTR
Hepatitis C virus genotype 3b (isolate Tr-Kj) (HCV)
POLG_HCVTW
Hepatitis C virus genotype 1b (isolate Taiwan) (HCV)
POLG_HCVVA
Hepatitis C virus genotype 2k (isolate VAT96) (HCV)
POLG_HCVVN
Hepatitis C virus genotype 6d (isolate VN235) (HCV)
POLG_HCVVO
Hepatitis C virus genotype 6k (isolate VN405) (HCV)
POLG_HCVVP
Hepatitis C virus genotype 6h (isolate VN004) (HCV)
POLG_HE71
Human enterovirus 71 (EV71) (EV-71)
POLG_HE71B
Human enterovirus 71 (strain USA/BrCr/1970) (EV71) (EV-71)
POLG_HE71M
Human enterovirus 71 (strain 7423/MS/87) (EV71) (EV-71)
POLG_HPE1H
Human parechovirus 1 (strain Harris) (HPeV-1) (Echovirus 22)
POLG_ILHV
Ilheus virus (ILHV)
POLG_JAEV1
Japanese encephalitis virus (strain SA-14) (JEV)
POLG_JAEV5
Japanese encephalitis virus (strain SA(v)) (JEV)
POLG_JAEVJ
Japanese encephalitis virus (strain Jaoars982) (JEV)
POLG_JAEVM
Japanese encephalitis virus (strain M28) (JEV)
POLG_KUNJM
Kunjin virus (strain MRM61C)
POLG_LANVT
Langat virus (strain TP21)
POLG_LIV
Louping ill virus (Li)
POLG_MVEV5
Murray valley encephalitis virus (strain MVE-1-51) (MVEV)
POLG_POWVL
Tick-borne powassan virus (strain LB) (POWV) (Powassan virus)
POLG_ROCV
Rocio virus (ROCV)
POLG_TBEVH
Tick-borne encephalitis virus (strain Hypr) (TBEV)
POLG_TBEVS
Tick-borne encephalitis virus Far Eastern subtype (strain Sofjin) (SOFV) (Sofjin virus)
POLG_TBEVW
Tick-borne encephalitis virus European subtype (strain Neudoerfl) (NEUV) (Neudoerfl virus)
POLG_USUV
Usutu virus (USUV)
POLG_WNV
West Nile virus (WNV)
POLG_YEFVA
Yellow fever virus (strain Ghana/Asibi/1927) (YFV)
POLG_YEFVC
Yellow fever virus (isolate Ivory Coast/1999) (YFV)
POLG_YEFVE
Yellow fever virus (isolate Ethiopia/Couma/1961) (YFV)
POLG_YEFVF
Yellow fever virus (strain French neurotropic vaccine FNV) (YFV)
POLG_YEFVI
Yellow fever virus (isolate Ivory Coast/85-82H/1982) (YFV)
POLG_YEFVN
Yellow fever virus (isolate Angola/14FA/1971) (YFV)
POLG_YEFVT
Yellow fever virus (strain Trinidad/TRINID79A/1979) (YFV)
POLG_YEFVU
Yellow fever virus (isolate Uganda/A7094A4/1948) (YFV)
POLG_ZIKVF
Zika virus (isolate ZIKV/Human/French Polynesia/10087PF/2013) (ZIKV)

21 entries

Structural polyprotein (p110)

Select_allDeselect_all
POLS_RUBVM
Rubella virus (strain M33) (RUBV) reference strain
POLS_RUBVN
Rubella virus (strain RN-UK86) (RUBV) reference strain
POLS_RUBVT
Rubella virus (strain Therien) (RUBV) reference strain
POLS_SFV
Semliki forest virus (SFV) reference strain

Structural polyprotein (p130)

POLS_SINDV
Sindbis virus (SINV) reference strain

Structural polyprotein (p130)

POLS_EEVV3
Venezuelan equine encephalitis virus (strain 3880) (VEEV)

Structural polyprotein (p130)

POLS_EEVV8
Venezuelan equine encephalitis virus (strain TC-83) (VEEV)

Structural polyprotein (p130)

POLS_EEVVE
Venezuelan equine encephalitis virus (strain Everglades Fe3-7c) (VEEV)

Structural polyprotein (p130)

POLS_EEVVM
Venezuelan equine encephalitis virus (strain Mena II) (VEEV)

Structural polyprotein (p130)

POLS_EEVVP
Venezuelan equine encephalitis virus (strain P676) (VEEV)

Structural polyprotein (p130)

POLS_EEVVT
Venezuelan equine encephalitis virus (strain Trinidad donkey) (VEEV)

Structural polyprotein (p130)

POLS_JAEV1
Japanese encephalitis virus (strain SA-14) (JEV)

Structural polyprotein

POLS_JAEV5
Japanese encephalitis virus (strain SA(v)) (JEV)

Structural polyprotein

POLS_JAEVJ
Japanese encephalitis virus (strain Jaoars982) (JEV)

Structural polyprotein

POLS_JAEVM
Japanese encephalitis virus (strain M28) (JEV)

Structural polyprotein

POLS_RUBVB
Rubella virus (strain BRD1) (RUBV)
POLS_RUBVC
Rubella virus (strain BRDII) (RUBV)
POLS_RUBVD
Rubella virus (strain Cendehill) (RUBV)
POLS_RUBVO
Rubella virus (strain TO-336 vaccine) (RUBV)
POLS_RUBVR
Rubella virus (strain RA27/3 vaccine) (RUBV)
POLS_RUBVV
Rubella virus (strain TO-336) (RUBV)

2 entries

Frameshifted structural polyprotein (p130)

Select_allDeselect_all
POLSF_SINDV
Sindbis virus (SINV) reference strain
POLSF_SFV
Semliki forest virus (SFV)

2 entries

Envelope glycoprotein p57 (gp84) (gp94)

Select_allDeselect_all
VGLG_BDVV
Borna disease virus (strain V) (BDV) reference strain
VGLG_BDV1
Borna disease virus 1 (BoDV-1)

11 entries

Envelope glycoprotein (GP1,2) (GP)

Select_allDeselect_all
VGP_EBOSU
Sudan ebolavirus (strain Human/Uganda/Gulu/2000) (SEBOV) (Sudan Ebola virus) reference strain
VGP_EBOZM
Zaire ebolavirus (strain Mayinga-76) (ZEBOV) (Zaire Ebola virus) reference strain
VGP_EBOEC
Zaire ebolavirus (strain Eckron-76) (ZEBOV) (Zaire Ebola virus)
VGP_EBOG4
Zaire ebolavirus (strain Gabon-94) (ZEBOV) (Zaire Ebola virus)
VGP_EBORE
Reston ebolavirus (strain Philippines-96) (REBOV) (Reston Ebola virus)
VGP_EBORR
Reston ebolavirus (strain Reston-89) (REBOV) (Reston Ebola virus)
VGP_EBORS
Reston ebolavirus (strain Siena/Philippine-92) (REBOV) (Reston Ebola virus)
VGP_EBOSB
Sudan ebolavirus (strain Boniface-76) (SEBOV) (Sudan Ebola virus)
VGP_EBOSM
Sudan ebolavirus (strain Maleo-79) (SEBOV) (Sudan Ebola virus)
VGP_EBOZ5
Zaire ebolavirus (strain Kikwit-95) (ZEBOV) (Zaire Ebola virus)
VGP_TAFVC
Tai Forest ebolavirus (strain Cote d'Ivoire-94) (TAFV) (Cote d'Ivoire Ebola virus)

1 entry

Major capsid protein VP1 (Major structural protein VP1)

VP1_POVJC
JC polyomavirus (JCPyV) (JCV)

8 entries

Outer capsid protein VP2

Select_allDeselect_all
VP2_BTV10
Bluetongue virus 10 (isolate USA) (BTV 10) reference strain
VP2_BTV11
Bluetongue virus 11 (isolate USA) (BTV 11)
VP2_BTV13
Bluetongue virus 13 (isolate USA) (BTV 13)
VP2_BTV17
Bluetongue virus 17 (isolate USA) (BTV 17)
VP2_BTV1A
Bluetongue virus 1 (isolate Australia) (BTV 1)
VP2_BTV1S
Bluetongue virus 1 (isolate South Africa) (BTV 1)
VP2_BTV1V
Bluetongue virus 1 (isolate South Africa vaccine) (BTV 1)
VP2_BTV3V
Bluetongue virus 3 (isolate South Africa vaccine) (BTV 3)