Viral genome packaging (kw:KW-0231)

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Large dsDNA bacteriophages, herpesviruses, adenoviruses and microviruses encode a powerful DNA-translocating machinenery that encapsidates a viral genome into a preassembled capsid or procapsid . The packaging machine is often composed of a portal structure, which provides a gate for DNA entry, and an ATP-driven motor . This motor is composed of the large subunit whose ATPase activity fuels DNA translocation, and most frequently, a small subunit that binds to the viral packaging site. DNA cleavage can be coupled to genome packaging .
Viral molecular biology Virion
Virus entry
Virus latency
Transcription and replication
Host-virus interactions
Virus exit
Links UniProt Keyword: KW-0231
GO ontology: GO:0019072
Virus Eukaryotic viruses:
Herpesviridae
Adenoviridae
Parvoviridae

Bacterial viruses:
Bacteriophage T4
(Myoviridae, T4likevirus)
Bacteriophage λ
(Siphoviridae, Lambdalikevirus)
Bacteriophage φ29
(Podoviridae, Phi29likevirus )
Human herpesvirus 1
(Herpesviridae, Simplexvirus )

Matching UniProtKB/Swiss-Prot entries

(all links/actions below point to uniprot.org website)

256 entries grouped by protein

8 entries

Pre-hexon-linking protein IIIa (Capsid vertex-specific component IIIa) (CVSC) (Protein IIIa) (pIIIa)

Select_allDeselect_all
CAP3_ADE02
Human adenovirus C serotype 2 (HAdV-2) (Human adenovirus 2) reference strain
CAP3_ADE12
Human adenovirus A serotype 12 (HAdV-12) (Human adenovirus 12) reference strain
CAP3_ADEG1
Fowl adenovirus A serotype 1 (strain CELO / Phelps) (FAdV-1) (Avian adenovirus gal1 (strain Phelps)) reference strain
CAP3_ADES1
Snake adenovirus serotype 1 (SnAdV-1) reference strain
CAP3_ADE05
Human adenovirus C serotype 5 (HAdV-5) (Human adenovirus 5)

pdb 6B1T; 6CGV; 7S78

CAP3_ADECC
Canine adenovirus serotype 1 (strain CLL) (CAdV-1) (Canine adenovirus 1 (strain CLL))
CAP3_ADECR
Canine adenovirus serotype 1 (strain RI261) (CAdV-1) (Canine adenovirus 1 (strain RI261))
CAP3_ADEM1
Murine adenovirus A serotype 1 (MAdV-1) (Murine adenovirus 1)

17 entries

Capsid vertex component 1

Select_allDeselect_all
CVC1_ALHV1
Alcelaphine herpesvirus 1 (strain C500) (AlHV-1) (Malignant catarrhal fever virus) reference strain
CVC1_EBVB9
Epstein-Barr virus (strain B95-8) (HHV-4) (Human herpesvirus 4) reference strain

pdb 6W2D; 6W2E; 7BQX; 7BR7

CVC1_EHV1B
Equine herpesvirus 1 (strain Ab4p) (EHV-1) (Equine abortion virus) reference strain
CVC1_EHV2
Equine herpesvirus 2 (strain 86/87) (EHV-2) reference strain
CVC1_GAHVM
Gallid herpesvirus 2 (strain Chicken/Md5/ATCC VR-987) (GaHV-2) (Marek's disease herpesvirus type 1) reference strain
CVC1_HCMVA
Human cytomegalovirus (strain AD169) (HHV-5) (Human herpesvirus 5) reference strain

pdb 7ET3; 8TEP; 8TES; 8TET; 8TEU; 8TEW

CVC1_HCMVM
Human cytomegalovirus (strain Merlin) (HHV-5) (Human herpesvirus 5) reference strain
CVC1_HHV11
Human herpesvirus 1 (strain 17) (HHV-1) (Human herpes simplex virus 1) reference strain
CVC1_HHV2H
Human herpesvirus 2 (strain HG52) (HHV-2) (Human herpes simplex virus 2) reference strain

pdb 6M6G; 6M6H

CVC1_HHV6U
Human herpesvirus 6A (strain Uganda-1102) (HHV-6 variant A) (Human B lymphotropic virus) reference strain
CVC1_HHV6Z
Human herpesvirus 6B (strain Z29) (HHV-6 variant B) (Human B lymphotropic virus) reference strain
CVC1_HHV7J
Human herpesvirus 7 (strain JI) (HHV-7) (Human T lymphotropic virus) reference strain
CVC1_HHV8P
Human herpesvirus 8 type P (isolate GK18) (HHV-8) (Kaposi's sarcoma-associated herpesvirus) reference strain

pdb 6PPB; 6PPH

CVC1_PSHV1
Psittacid herpesvirus 1 (isolate Amazon parrot/-/97-0001/1997) (PsHV-1) (Pacheco's disease virus) reference strain
CVC1_SHV21
Saimiriine herpesvirus 2 (strain 11) (SaHV-2) (Herpesvirus saimiri) reference strain
CVC1_VZVD
Varicella-zoster virus (strain Dumas) (HHV-3) (Human herpesvirus 3) reference strain
CVC1_ELHVK
Elephantid herpesvirus 1 (isolate Asian elephant/Berlin/Kiba/1998) (EIHV-1) (Elephant endotheliotropic herpesvirus)

21 entries

Capsid vertex component 2

Select_allDeselect_all
CVC2_ALHV1
Alcelaphine herpesvirus 1 (strain C500) (AlHV-1) (Malignant catarrhal fever virus) reference strain
CVC2_EBVA8
Epstein-Barr virus (strain AG876) (HHV-4) (Human herpesvirus 4) reference strain
CVC2_EBVB9
Epstein-Barr virus (strain B95-8) (HHV-4) (Human herpesvirus 4) reference strain

pdb 6W2D; 6W2E; 7BQX; 7BR7

CVC2_EHV1B
Equine herpesvirus 1 (strain Ab4p) (EHV-1) (Equine abortion virus) reference strain
CVC2_EHV2
Equine herpesvirus 2 (strain 86/87) (EHV-2) reference strain
CVC2_GAHVM
Gallid herpesvirus 2 (strain Chicken/Md5/ATCC VR-987) (GaHV-2) (Marek's disease herpesvirus type 1) reference strain
CVC2_HCMVA
Human cytomegalovirus (strain AD169) (HHV-5) (Human herpesvirus 5) reference strain

pdb 7ET3; 7NXP; 8TEP; 8TES; 8TET; 8TEU; 8TEW

CVC2_HCMVM
Human cytomegalovirus (strain Merlin) (HHV-5) (Human herpesvirus 5) reference strain
CVC2_HHV11
Human herpesvirus 1 (strain 17) (HHV-1) (Human herpes simplex virus 1) reference strain

pdb 2F5U

CVC2_HHV2H
Human herpesvirus 2 (strain HG52) (HHV-2) (Human herpes simplex virus 2) reference strain

pdb 6M6G; 6M6H

CVC2_HHV6U
Human herpesvirus 6A (strain Uganda-1102) (HHV-6 variant A) (Human B lymphotropic virus) reference strain
CVC2_HHV6Z
Human herpesvirus 6B (strain Z29) (HHV-6 variant B) (Human B lymphotropic virus) reference strain
CVC2_HHV7J
Human herpesvirus 7 (strain JI) (HHV-7) (Human T lymphotropic virus) reference strain
CVC2_HHV8P
Human herpesvirus 8 type P (isolate GK18) (HHV-8) (Kaposi's sarcoma-associated herpesvirus) reference strain

pdb 6PPB; 6PPH; 7NXQ

CVC2_PSHV1
Psittacid herpesvirus 1 (isolate Amazon parrot/-/97-0001/1997) (PsHV-1) (Pacheco's disease virus) reference strain
CVC2_SHV21
Saimiriine herpesvirus 2 (strain 11) (SaHV-2) (Herpesvirus saimiri) reference strain
CVC2_VZVD
Varicella-zoster virus (strain Dumas) (HHV-3) (Human herpesvirus 3) reference strain
CVC2_EBVG
Epstein-Barr virus (strain GD1) (HHV-4) (Human gammaherpesvirus 4)
CVC2_EHV1V
Equine herpesvirus 1 (strain V592) (EHV-1) (Equine abortion virus)
CVC2_ELHVK
Elephantid herpesvirus 1 (isolate Asian elephant/Berlin/Kiba/1998) (EIHV-1) (Elephant endotheliotropic herpesvirus)
CVC2_ILTVT
Infectious laryngotracheitis virus (strain Thorne V882) (ILTV) (Gallid herpesvirus 1)

1 entry

DNA N-6-adenine-methyltransferase (DAM) (EC 2.1.1.72) (EcoP1I DNA MTase) (M.EcoP1I) (Type II methyltransferase M.EphP1ORF2P) (M.EphP1ORF2P)

DAM_BPP1
Escherichia phage P1 (Bacteriophage P1) reference strain

1 entry

DNA-packaging protein FI

FI_LAMBD
Escherichia phage lambda (Bacteriophage lambda) reference strain

pdb 2LSM

4 entries

DNA-binding protein J (J protein) (Small core protein)

Select_allDeselect_all
J_BPAL3
Escherichia phage alpha3 (Bacteriophage alpha-3) reference strain

pdb 1M06

J_BPG4
Escherichia phage G4 (Bacteriophage G4) reference strain

pdb 1GFF

J_BPPHS
Enterobacteria phage phiX174 (Isolate Sanger) (Bacteriophage phi-X174) reference strain

pdb 1RB8; 2BPA

J_BPPHK
Enterobacteria phage phiK (Bacteriophage phi-K)

15 entries

Initiator protein NS1 (NS1) (EC 3.1.21.-) (EC 3.6.4.12) (NCVP1) (Non-capsid protein NS-1) (Non-structural protein 1) (Non-structural protein NS1)

Select_allDeselect_all
NS1_AADNV
Aedes albopictus densovirus (isolate Boublik/1994) (AalDNV) reference strain

Initiator protein NS1 (NS1) (EC 3.1.21.-) (EC 3.6.4.12) (Non-structural protein 1) (Non-structural protein NS1)

NS1_ADVG
Aleutian mink disease parvovirus (strain G) (ADV) reference strain

Initiator protein NS1 (NS1) (EC 3.1.21.-) (EC 3.6.4.12) (Non-structural protein 1) (Non-structural protein NS1)

NS1_JDNVP
Junonia coenia densovirus (isolate pBRJ/1990) (JcDNV) reference strain

Initiator protein NS1 (NS1) (EC 3.1.21.-) (EC 3.6.4.12) (Non-structural protein 1) (Non-structural protein NS1)

NS1_MUMIP
Murine minute virus (strain MVM prototype) (MVM) (Murine minute virus (strain MVM(p))) reference strain

Initiator protein NS1 (NS1) (EC 3.1.21.-) (EC 3.6.4.12) (NCVP1) (Non-capsid protein NS-1) (Non-structural protein NS1)

pdb 3WRN; 3WRO; 3WRQ; 3WRR; 3WRS; 4PP4; 4R94

NS1_AEDEV
Aedes densonucleosis virus (strain GKV 002 002) (Aedes densovirus)

Initiator protein NS1 (NS1) (EC 3.1.21.-) (EC 3.6.4.12) (Non-structural protein 1) (Non-structural protein NS1)

NS1_BMDNV
Bombyx mori densovirus (BmDNV) (Bombyx densonucleosis virus)

Initiator protein NS1 (NS1) (EC 3.1.21.-) (EC 3.6.4.12) (Non-structural protein 1) (Non-structural protein NS1)

NS1_DSDNV
Diatraea saccharalis densovirus (DsDNV)

Initiator protein NS1 (NS1) (EC 3.1.21.-) (EC 3.6.4.12) (Non-structural protein 1) (Non-structural protein NS1)

NS1_FPV19
Feline panleukopenia virus (strain 193) (FPV)
NS1_MEVA
Mink enteritis virus (strain Abashiri) (MEV)
NS1_MUMIM
Murine minute virus (strain MVMi) (MVM) (Murine parvovirus)
NS1_PAVCN
Canine parvovirus type 2 (isolate Dog/United States/CPV-N/1978) (CPV-2)
NS1_PAVHH
Hamster parvovirus H1
NS1_PAVL3
Parvovirus LuIII
NS1_PAVPK
Porcine parvovirus (strain Kresse) (PPV)
NS1_PAVPN
Porcine parvovirus (strain NADL-2) (PPV)

1 entry

Packaging enzyme P4 (EC 3.6.1.15)

P4_BPPH6
Pseudomonas phage phi6 (Bacteriophage phi-6) reference strain

pdb 4BLO; 5MUU; 5MUV; 5MUW; 6HY0

1 entry

Assembly protein P7

P7_BPPH6
Pseudomonas phage phi6 (Bacteriophage phi-6) reference strain

1 entry

Putative packaging signal terminase (PAC site terminase)

PACK_BPCPT
Vibrio phage CP-T1 (Bacteriophage CP-T1)

11 entries

Packaging protein 1 (Packaging protein IVa2)

Select_allDeselect_all
PKG1_ADE02
Human adenovirus C serotype 2 (HAdV-2) (Human adenovirus 2) reference strain
PKG1_ADE12
Human adenovirus A serotype 12 (HAdV-12) (Human adenovirus 12) reference strain
PKG1_ADE40
Human adenovirus F serotype 40 (HAdV-40) (Human adenovirus 40) reference strain
PKG1_ADEG1
Fowl adenovirus A serotype 1 (strain CELO / Phelps) (FAdV-1) (Avian adenovirus gal1 (strain Phelps)) reference strain
PKG1_ADES1
Snake adenovirus serotype 1 (SnAdV-1) reference strain
PKG1_ADE05
Human adenovirus C serotype 5 (HAdV-5) (Human adenovirus 5)
PKG1_ADE07
Human adenovirus B serotype 7 (HAdV-7) (Human adenovirus 7)
PKG1_ADECC
Canine adenovirus serotype 1 (strain CLL) (CAdV-1) (Canine adenovirus 1 (strain CLL))
PKG1_ADECR
Canine adenovirus serotype 1 (strain RI261) (CAdV-1) (Canine adenovirus 1 (strain RI261))
PKG1_ADECT
Canine adenovirus serotype 2 (strain Toronto A 26-61) (CAdV-2) (Canine adenovirus 2 (strain Toronto A 26-61))
PKG1_ADEM1
Murine adenovirus A serotype 1 (MAdV-1) (Murine adenovirus 1)

3 entries

DNA packaging protein (ATPase gp16) (EC 3.6.4.-) (Gene product 16) (gp16) (Protein p16)

Select_allDeselect_all
PKG16_BPPH2
Bacillus phage phi29 (Bacteriophage phi-29) reference strain

pdb 5HD9; 6V1W; 7CNB; 7JQQ

PKG16_BPB03
Bacillus phage B103 (Bacteriophage B103)
PKG16_BPPZA
Bacillus phage PZA (Bacteriophage PZA)

2 entries

Packaging protein 2 (Packaging protein 22K) (L4-22K)

Select_allDeselect_all
PKG2_ADE02
Human adenovirus C serotype 2 (HAdV-2) (Human adenovirus 2) reference strain
PKG2_ADE05
Human adenovirus C serotype 5 (HAdV-5) (Human adenovirus 5)

1 entry

Packaging protein P20

PKG20_BPPRD
Enterobacteria phage PRD1 (Bacteriophage PRD1) reference strain

1 entry

Packaging protein P22 (GpK) (Protein K)

PKG22_BPPRD
Enterobacteria phage PRD1 (Bacteriophage PRD1) reference strain

7 entries

Packaging protein 3 (L1-52/55 kDa protein) (Packaging protein 52K)

Select_allDeselect_all
PKG3_ADE02
Human adenovirus C serotype 2 (HAdV-2) (Human adenovirus 2) reference strain
PKG3_ADE12
Human adenovirus A serotype 12 (HAdV-12) (Human adenovirus 12) reference strain
PKG3_ADEG1
Fowl adenovirus A serotype 1 (strain CELO / Phelps) (FAdV-1) (Avian adenovirus gal1 (strain Phelps)) reference strain
PKG3_ADES1
Snake adenovirus serotype 1 (SnAdV-1) reference strain
PKG3_ADE05
Human adenovirus C serotype 5 (HAdV-5) (Human adenovirus 5)
PKG3_ADECC
Canine adenovirus serotype 1 (strain CLL) (CAdV-1) (Canine adenovirus 1 (strain CLL))
PKG3_ADECR
Canine adenovirus serotype 1 (strain RI261) (CAdV-1) (Canine adenovirus 1 (strain RI261))

1 entry

Packaging efficiency factor P6

PKG6_BPPRD
Enterobacteria phage PRD1 (Bacteriophage PRD1) reference strain

1 entry

DNA packaging ATPase P9 (Protein P9)

PKG9_BPPRD
Enterobacteria phage PRD1 (Bacteriophage PRD1) reference strain

58 entries

Portal protein

Select_allDeselect_all
PORTL_ALHV1
Alcelaphine herpesvirus 1 (strain C500) (AlHV-1) (Malignant catarrhal fever virus) reference strain
PORTL_BP234
Thermus virus P23-45 (Thermus thermophilus phage P23-45) reference strain

Portal protein (Gene product 86) (gp86)

pdb 6QJT

PORTL_BP44A
Staphylococcus phage 44AHJD reference strain

Portal protein (Connector protein) (Gene product 19) (gp19) (Head-to-tail connector) (Probable portal protein) (Upper collar protein)

PORTL_BPAPS
Acyrthosiphon pisum secondary endosymbiont phage 1 (Bacteriophage APSE-1) reference strain

Portal protein (Gene product 19) (Gp19) (Head-to-tail connector)

PORTL_BPBPP
Bordetella phage BPP-1 reference strain

Probable portal protein (Gene product 21) (gp21) (Head-to-tail connector)

PORTL_BPCA1
Bacteroides phage crAss001 (Bacteroides phage PhiCrAss001) reference strain

Portal protein (Gene product 20) (gp20)

pdb 7QOG; 7QOH; 7QOI; 7QOJ; 7QOL; 8CKB

PORTL_BPE15
Salmonella phage epsilon15 reference strain

Portal protein (Head-to-tail connector)

PORTL_BPHA1
Halomonas phage phiHAP-1 (isolate -/Gulf of Mexico/-/2001) (Bacteriophage phiHAP-1) reference strain

Probable portal protein

PORTL_BPHC1
Haemophilus phage HP1 (strain HP1c1) (Bacteriophage HP1) reference strain

Probable portal protein (ORF15)

PORTL_BPKHP
Helicobacter pylori bacteriophage KHP30 reference strain

Portal protein (Head-to-tail connector gp8) (Putative portal protein ORF17)

pdb 7WMP

PORTL_BPKMV
Pseudomonas phage phiKMV reference strain

Portal protein (Head-to-tail connector)

PORTL_BPKVM
Vibrio phage KVP40 (isolate Vibrio parahaemolyticus/Japan/Matsuzaki/1991) (KVP40) (Bacteriophage KVP40) reference strain

Portal protein (gp20)

PORTL_BPLP2
Lactococcus phage p2 (Lactococcus lactis bacteriophage p2) reference strain

Probable portal protein (Gene product 4) (gp4)

PORTL_BPLSK
Lactococcus phage SK1 (Lactococcus lactis bacteriophage SK1) reference strain

Probable portal protein (Gene product 4) (gp4) (Putative portal protein)

PORTL_BPMD2
Mycobacterium phage D29 (Mycobacteriophage D29) reference strain

Portal protein (Gene product 14) (gp14) (Portal vertex protein)

PORTL_BPML5
Mycobacterium phage L5 (Mycobacteriophage L5) reference strain

Portal protein (Gene product 14) (gp14) (Portal vertex protein)

PORTL_BPMU
Escherichia phage Mu (Bacteriophage Mu) reference strain

Portal protein (Gene product 29) (gp29) (Gene product H) (gpH) (Head-tail connector)

PORTL_BPN15
Escherichia phage N15 (Bacteriophage N15) reference strain
PORTL_BPN4
Enterobacteria phage N4 (Bacteriophage N4) reference strain

Probable portal protein (94 kDa protein) (Gene product 59) (gp59) (Head-to-tail connector)

PORTL_BPP2
Escherichia phage P2 (Bacteriophage P2) reference strain

Probable portal protein (GpQ)

PORTL_BPP22
Salmonella phage P22 (Bacteriophage P22) reference strain

Portal protein (Gene product 1) (Gp1) (Head-to-tail connector)

pdb 3LJ5; 4V4K; 5GAI; 5JJ1; 5JJ3; 8EAO; 8TVU; 8U10; 8U11

PORTL_BPPCD
Clostridium phage phiCD119 (strain Clostridium difficile/United States/Govind/2006) (Bacteriophage phiCD119) reference strain

Portal protein (Portal vertex protein)

PORTL_BPPH2
Bacillus phage phi29 (Bacteriophage phi-29) reference strain

Portal protein (Connector protein) (Gene product 10) (gp10) (Gene product 19) (gp19) (Head-to-tail connector) (Probable portal protein) (Protein p10) (Upper collar protein)

pdb 1FOU; 1H5W; 1IJG; 1JNB; 6QX7; 6QYJ; 6QYM; 6QZ9; 6QZF

PORTL_BPPHC
Streptomyces phage phiC31 (Bacteriophage phi-C31) reference strain

Probable portal protein

PORTL_BPPHE
Enterococcus phage phiEF24C (Enterococcus bacteriophage phi-EF24C) reference strain

Probable portal protein

PORTL_BPSAV
Salmonella phage ViI reference strain

Portal protein (gp20)

PORTL_BPSP1
Bacillus phage SP01 (Bacteriophage SP01) reference strain

Probable portal protein

PORTL_BPSP6
Enterobacteria phage SP6 (Bacteriophage SP6) reference strain

Portal protein (Head-to-tail connector)

PORTL_BPSPP
Bacillus phage SPP1 (Bacteriophage SPP1) reference strain

Portal protein (Gene product 6) (gp6) (Portal vertex protein)

pdb 2JES; 5A20; 5A21; 7Z4W

PORTL_BPT4
Enterobacteria phage T4 (Bacteriophage T4) reference strain

Portal protein (Gene product 20) (gp20)

pdb 3JA7; 6UZC

PORTL_BPT5
Escherichia phage T5 (Enterobacteria phage T5) reference strain

Portal protein (Capsid protein pb7)

PORTL_BPT7
Escherichia phage T7 (Bacteriophage T7) reference strain

Portal protein (Gene product 8) (Gp8) (Head-to-tail connector)

pdb 3J4A; 6QWP; 6QX5; 6QXM; 6R21; 6TJP; 7BOU; 7BP0; 7EY6; 7EY8; 8E4G

PORTL_BPTWO
Staphylococcus phage Twort (strain DSM 17442 / HER 48) (Bacteriophage Twort) reference strain

Probable portal protein

PORTL_EBVA8
Epstein-Barr virus (strain AG876) (HHV-4) (Human herpesvirus 4) reference strain
PORTL_EBVB9
Epstein-Barr virus (strain B95-8) (HHV-4) (Human herpesvirus 4) reference strain

pdb 7BQT

PORTL_EHV1B
Equine herpesvirus 1 (strain Ab4p) (EHV-1) (Equine abortion virus) reference strain
PORTL_EHV2
Equine herpesvirus 2 (strain 86/87) (EHV-2) reference strain
PORTL_GAHVM
Gallid herpesvirus 2 (strain Chicken/Md5/ATCC VR-987) (GaHV-2) (Marek's disease herpesvirus type 1) reference strain
PORTL_HCMVA
Human cytomegalovirus (strain AD169) (HHV-5) (Human herpesvirus 5) reference strain

pdb 7ET2; 7ETM; 8HEU; 8HEV

PORTL_HCMVM
Human cytomegalovirus (strain Merlin) (HHV-5) (Human herpesvirus 5) reference strain
PORTL_HHV11
Human herpesvirus 1 (strain 17) (HHV-1) (Human herpes simplex virus 1) reference strain
PORTL_HHV2H
Human herpesvirus 2 (strain HG52) (HHV-2) (Human herpes simplex virus 2) reference strain
PORTL_HHV6U
Human herpesvirus 6A (strain Uganda-1102) (HHV-6 variant A) (Human B lymphotropic virus) reference strain
PORTL_HHV6Z
Human herpesvirus 6B (strain Z29) (HHV-6 variant B) (Human B lymphotropic virus) reference strain
PORTL_HHV7J
Human herpesvirus 7 (strain JI) (HHV-7) (Human T lymphotropic virus) reference strain
PORTL_HHV8P
Human herpesvirus 8 type P (isolate GK18) (HHV-8) (Kaposi's sarcoma-associated herpesvirus) reference strain

pdb 6PPI

PORTL_LAMBD
Escherichia phage lambda (Bacteriophage lambda) reference strain

Portal protein B (GpB) (Minor capsid protein B)

pdb 8K38; 8K39; 8XOT; 8XOU; 8XOW; 8XPM; 8XQB

PORTL_PSHV1
Psittacid herpesvirus 1 (isolate Amazon parrot/-/97-0001/1997) (PsHV-1) (Pacheco's disease virus) reference strain
PORTL_SHV21
Saimiriine herpesvirus 2 (strain 11) (SaHV-2) (Herpesvirus saimiri) reference strain
PORTL_VZVD
Varicella-zoster virus (strain Dumas) (HHV-3) (Human herpesvirus 3) reference strain
PORTL_BPB03
Bacillus phage B103 (Bacteriophage B103)

Portal protein (Gene product 10) (gp10) (Head-to-tail connector) (Upper collar protein)

PORTL_BPG20
Thermus phage G20c (Thermus thermophilus phage G20c)

Portal protein (Gene product 81) (gp81)

pdb 6IBG

PORTL_BPHK7
Enterobacteria phage HK97 (Bacteriophage HK97)

Portal protein (GP3)

pdb 8CEZ; 8FQL

PORTL_BPP21
Enterobacteria phage P21 (Bacteriophage 21) (Bacteriophage P21)

Portal protein B (GpB) (Minor capsid protein B)

PORTL_BPPZA
Bacillus phage PZA (Bacteriophage PZA)

Portal protein (Connector protein) (Gene product 10) (gp10) (Gene product 19) (gp19) (Head-to-tail connector) (Probable portal protein) (Protein p10) (Upper collar protein)

PORTL_BPT3
Enterobacteria phage T3 (Bacteriophage T3)

Portal protein (Gene product 8) (Gp8) (Head-to-tail connector)

PORTL_EBVG
Epstein-Barr virus (strain GD1) (HHV-4) (Human gammaherpesvirus 4)

pdb 6RVR; 6RVS

PORTL_EHV1V
Equine herpesvirus 1 (strain V592) (EHV-1) (Equine abortion virus)

4 entries

Protein 33K (L4-33K) (Splicing factor 33K) (Terminase, small subunit)

Select_allDeselect_all
SF33K_ADE02
Human adenovirus C serotype 2 (HAdV-2) (Human adenovirus 2) reference strain
SF33K_ADE40
Human adenovirus F serotype 40 (HAdV-40) (Human adenovirus 40) reference strain
SF33K_ADE05
Human adenovirus C serotype 5 (HAdV-5) (Human adenovirus 5)
SF33K_ADE41
Human adenovirus F serotype 41 (HAdV-41) (Human adenovirus 41)

16 entries

Terminase large subunit (DNA-packaging protein) (Gene product 2) (gp2)

Select_allDeselect_all
TERL_BP234
Thermus virus P23-45 (Thermus thermophilus phage P23-45) reference strain

Terminase, large subunit (DNA-packaging protein) (Gene product 85) (gp85)

TERL_BPLP2
Lactococcus phage p2 (Lactococcus lactis bacteriophage p2) reference strain
TERL_BPLSK
Lactococcus phage SK1 (Lactococcus lactis bacteriophage SK1) reference strain
TERL_BPMU
Escherichia phage Mu (Bacteriophage Mu) reference strain

Probable terminase, large subunit gp28 (EC 3.1.-.-) (Gene product 28) (gp28) (Gene product E) (gpE) (Pacase, large subunit) (Packaging protein E)

TERL_BPP1
Escherichia phage P1 (Bacteriophage P1) reference strain

Probable terminase, large subunit (EC 3.1.-.-) (DNA-packaging protein B) (PACase B protein) (Terminase B protein) (Terminase large subunit)

TERL_BPP22
Salmonella phage P22 (Bacteriophage P22) reference strain

Terminase, large subunit (DNA-packaging protein gp2)

pdb 4DKW; 6VI1; 6XMI

TERL_BPSF5
Shigella phage SfV (Shigella flexneri bacteriophage V) (Bacteriophage SfV) reference strain

Putative terminase large subunit

TERL_BPSPP
Bacillus phage SPP1 (Bacteriophage SPP1) reference strain

Terminase, large subunit (DNA-packaging protein) (Gene product 2) (gp2)

pdb 2WBN; 2WC9

TERL_BPT4
Enterobacteria phage T4 (Bacteriophage T4) reference strain

Terminase, large subunit (DNA-packaging protein) (Gene product 17) (gp17)

pdb 2O0H; 2O0J; 2O0K; 3CPE; 3EZK

TERL_BPT5
Escherichia phage T5 (Enterobacteria phage T5) reference strain

Terminase, large subunit (DNA-packaging protein)

TERL_BPT7
Escherichia phage T7 (Bacteriophage T7) reference strain

Terminase, large subunit (DNA-packaging protein) (Gene product 19) (Gp19)

pdb 4BIJ; 4BIL

TERL_LAMBD
Escherichia phage lambda (Bacteriophage lambda) reference strain

Terminase, large subunit (DNA-packaging protein A) (Large terminase protein) (gpA)

TERL_BPG20
Thermus phage G20c (Thermus thermophilus phage G20c)

Terminase, large subunit (DNA-packaging protein) (DNA-packaging protein gp80) (Gene product 80) (gp80)

pdb 5M1F; 5M1K; 5M1N; 5M1O; 5M1P; 5M1Q

TERL_BPP21
Enterobacteria phage P21 (Bacteriophage 21) (Bacteriophage P21)

Terminase, large subunit (DNA-packaging protein) (DNA-packaging protein gp2) (Gene product 2) (gp2) (Large terminase protein)

TERL_BPP7
Enterobacteria phage P7 (Bacteriophage P7)

Probable terminase, large subunit (EC 3.1.-.-) (DNA-packaging protein B) (PACase B protein) (Terminase B protein)

TERL_BPT3
Enterobacteria phage T3 (Bacteriophage T3)

Terminase, large subunit (DNA-packaging protein) (Gene product 19) (gp19)

1 entry

Primer terminal protein (TP) (DNA terminal protein) (Gene product 3) (gp3) (Protein p3) (Terminal protein)

TERM_BPPH2
Bacillus phage phi29 (Bacteriophage phi-29) reference strain

pdb 2EX3

15 entries

Terminase small subunit (Gene product 1) (gp1)

Select_allDeselect_all
TERS_BP234
Thermus virus P23-45 (Thermus thermophilus phage P23-45) reference strain

Terminase, small subunit (DNA-packaging protein gp84) (Gene product 84) (gp84)

TERS_BP80A
Staphylococcus phage 80alpha reference strain

Terminase small subunit

TERS_BPLP2
Lactococcus phage p2 (Lactococcus lactis bacteriophage p2) reference strain
TERS_BPLSK
Lactococcus phage SK1 (Lactococcus lactis bacteriophage SK1) reference strain
TERS_BPMU
Escherichia phage Mu (Bacteriophage Mu) reference strain

Probable terminase, small subunit gp27 (Gene product 27) (gp27) (Gene product D) (gpD) (Pacase, small subunit) (Packaging protein D)

TERS_BPP22
Salmonella phage P22 (Bacteriophage P22) reference strain

Terminase, small subunit (DNA-packaging protein gp3)

pdb 3P9A

TERS_BPSPP
Bacillus phage SPP1 (Bacteriophage SPP1) reference strain

Terminase small subunit (G1P) (Terminase, small subunit gp1)

TERS_BPT4
Enterobacteria phage T4 (Bacteriophage T4) reference strain

Terminase, small subunit (Gene product 16) (gp16) (Packaging protein Gp16)

TERS_BPT7
Escherichia phage T7 (Bacteriophage T7) reference strain

Terminase, small subunit gp18 (DNA-packaging protein A) (Gene product 18) (Gp18)

TERS_LAMBD
Escherichia phage lambda (Bacteriophage lambda) reference strain

Terminase small subunit (EC 3.6.4.-) (DNA-packaging protein Nu1) (Gene product Nu1) (gpNu1)

pdb 1J9I; 6HN7; 7LW0

TERS_BPG20
Thermus phage G20c (Thermus thermophilus phage G20c)

Terminase, small subunit (DNA-packaging protein gp79) (Gene product 79) (gp79)

pdb 4XVN; 6EJQ

TERS_BPLP7
Enterobacteria phage LP7 (Bacteriophage LP7)

Terminase, small subunit (DNA-packaging protein gp3)

TERS_BPP21
Enterobacteria phage P21 (Bacteriophage 21) (Bacteriophage P21)

Terminase, small subunit (Gp1)

pdb 7LWR

TERS_BPRH5
Bacillus phage rho15 (Bacteriophage rho-15)

Terminase small subunit (G1P)

TERS_BPSF6
Bacillus phage SF6 (Bacteriophage SF6)

Terminase small subunit (G1P) (Terminase, small subunit)

pdb 2CMP; 3ZQM; 3ZQN; 3ZQO; 3ZQP; 3ZQQ; 4ZC3

25 entries

Tripartite terminase subunit 1

Select_allDeselect_all
TRM1_ALHV1
Alcelaphine herpesvirus 1 (strain C500) (AlHV-1) (Malignant catarrhal fever virus) reference strain
TRM1_EBVB9
Epstein-Barr virus (strain B95-8) (HHV-4) (Human herpesvirus 4) reference strain
TRM1_EHV1B
Equine herpesvirus 1 (strain Ab4p) (EHV-1) (Equine abortion virus) reference strain
TRM1_EHV2
Equine herpesvirus 2 (strain 86/87) (EHV-2) reference strain
TRM1_GAHVM
Gallid herpesvirus 2 (strain Chicken/Md5/ATCC VR-987) (GaHV-2) (Marek's disease herpesvirus type 1) reference strain
TRM1_HCMVA
Human cytomegalovirus (strain AD169) (HHV-5) (Human herpesvirus 5) reference strain
TRM1_HCMVM
Human cytomegalovirus (strain Merlin) (HHV-5) (Human herpesvirus 5) reference strain
TRM1_HHV11
Human herpesvirus 1 (strain 17) (HHV-1) (Human herpes simplex virus 1) reference strain

pdb 6M5R; 6M5S; 6M5U; 6M5V

TRM1_HHV2H
Human herpesvirus 2 (strain HG52) (HHV-2) (Human herpes simplex virus 2) reference strain
TRM1_HHV6U
Human herpesvirus 6A (strain Uganda-1102) (HHV-6 variant A) (Human B lymphotropic virus) reference strain
TRM1_HHV6Z
Human herpesvirus 6B (strain Z29) (HHV-6 variant B) (Human B lymphotropic virus) reference strain
TRM1_HHV7J
Human herpesvirus 7 (strain JI) (HHV-7) (Human T lymphotropic virus) reference strain
TRM1_HHV8P
Human herpesvirus 8 type P (isolate GK18) (HHV-8) (Kaposi's sarcoma-associated herpesvirus) reference strain
TRM1_MUHVS
Murid herpesvirus 1 (strain Smith) (MuHV-1) (Mouse cytomegalovirus) reference strain
TRM1_PSHV1
Psittacid herpesvirus 1 (isolate Amazon parrot/-/97-0001/1997) (PsHV-1) (Pacheco's disease virus) reference strain
TRM1_SHV21
Saimiriine herpesvirus 2 (strain 11) (SaHV-2) (Herpesvirus saimiri) reference strain
TRM1_VZVD
Varicella-zoster virus (strain Dumas) (HHV-3) (Human herpesvirus 3) reference strain
TRM1_BHV2B
Bovine herpesvirus 2 (strain BMV) (BoHV-2) (Bovine mammillitis virus)
TRM1_EHV1
Equine herpesvirus 1 (strain HVS25A) (EHV-1) (Equine abortion virus)
TRM1_EHV1V
Equine herpesvirus 1 (strain V592) (EHV-1) (Equine abortion virus)
TRM1_ELHVK
Elephantid herpesvirus 1 (isolate Asian elephant/Berlin/Kiba/1998) (EIHV-1) (Elephant endotheliotropic herpesvirus)
TRM1_HHV1A
Human herpesvirus 1 (strain Angelotti) (HHV-1) (Human herpes simplex virus 1)
TRM1_HHV1F
Human herpesvirus 1 (strain F) (HHV-1) (Human herpes simplex virus 1)
TRM1_SUHVF
Suid herpesvirus 1 (strain Indiana-Funkhauser / Becker) (SuHV-1) (Pseudorabies virus (strain Indiana-Funkhauser / Becker))
TRM1_TUHV2
Tupaiid herpesvirus (strain 2) (TuHV-2) (Herpesvirus tupaia (strain 2))

13 entries

Tripartite terminase subunit 2

Select_allDeselect_all
TRM2_ALHV1
Alcelaphine herpesvirus 1 (strain C500) (AlHV-1) (Malignant catarrhal fever virus) reference strain
TRM2_EHV1B
Equine herpesvirus 1 (strain Ab4p) (EHV-1) (Equine abortion virus) reference strain
TRM2_EHV2
Equine herpesvirus 2 (strain 86/87) (EHV-2) reference strain
TRM2_GAHVM
Gallid herpesvirus 2 (strain Chicken/Md5/ATCC VR-987) (GaHV-2) (Marek's disease herpesvirus type 1) reference strain
TRM2_HCMVA
Human cytomegalovirus (strain AD169) (HHV-5) (Human herpesvirus 5) reference strain
TRM2_HCMVM
Human cytomegalovirus (strain Merlin) (HHV-5) (Human herpesvirus 5) reference strain
TRM2_HHV11
Human herpesvirus 1 (strain 17) (HHV-1) (Human herpes simplex virus 1) reference strain

pdb 6M5R; 6M5S; 6M5U; 6M5V

TRM2_HHV2H
Human herpesvirus 2 (strain HG52) (HHV-2) (Human herpes simplex virus 2) reference strain
TRM2_HHV6U
Human herpesvirus 6A (strain Uganda-1102) (HHV-6 variant A) (Human B lymphotropic virus) reference strain
TRM2_HHV6Z
Human herpesvirus 6B (strain Z29) (HHV-6 variant B) (Human B lymphotropic virus) reference strain
TRM2_HHV8P
Human herpesvirus 8 type P (isolate GK18) (HHV-8) (Kaposi's sarcoma-associated herpesvirus) reference strain
TRM2_PSHV1
Psittacid herpesvirus 1 (isolate Amazon parrot/-/97-0001/1997) (PsHV-1) (Pacheco's disease virus) reference strain
TRM2_VZVD
Varicella-zoster virus (strain Dumas) (HHV-3) (Human herpesvirus 3) reference strain

20 entries

Tripartite terminase subunit 3 (EC 3.1.-.-) (Terminase large subunit)

Select_allDeselect_all
TRM3_ALHV1
Alcelaphine herpesvirus 1 (strain C500) (AlHV-1) (Malignant catarrhal fever virus) reference strain
TRM3_EBVA8
Epstein-Barr virus (strain AG876) (HHV-4) (Human herpesvirus 4) reference strain
TRM3_EBVB9
Epstein-Barr virus (strain B95-8) (HHV-4) (Human herpesvirus 4) reference strain
TRM3_EHV1B
Equine herpesvirus 1 (strain Ab4p) (EHV-1) (Equine abortion virus) reference strain
TRM3_EHV2
Equine herpesvirus 2 (strain 86/87) (EHV-2) reference strain
TRM3_GAHVM
Gallid herpesvirus 2 (strain Chicken/Md5/ATCC VR-987) (GaHV-2) (Marek's disease herpesvirus type 1) reference strain
TRM3_HCMVA
Human cytomegalovirus (strain AD169) (HHV-5) (Human herpesvirus 5) reference strain

pdb 3N4P; 3N4Q; 6EY7

TRM3_HCMVM
Human cytomegalovirus (strain Merlin) (HHV-5) (Human herpesvirus 5) reference strain
TRM3_HHV11
Human herpesvirus 1 (strain 17) (HHV-1) (Human herpes simplex virus 1) reference strain

pdb 4IOX; 5HUW; 6M5R; 6M5S; 6M5T; 6M5U; 6M5V

TRM3_HHV2H
Human herpesvirus 2 (strain HG52) (HHV-2) (Human herpes simplex virus 2) reference strain
TRM3_HHV6U
Human herpesvirus 6A (strain Uganda-1102) (HHV-6 variant A) (Human B lymphotropic virus) reference strain
TRM3_HHV6Z
Human herpesvirus 6B (strain Z29) (HHV-6 variant B) (Human B lymphotropic virus) reference strain
TRM3_HHV7J
Human herpesvirus 7 (strain JI) (HHV-7) (Human T lymphotropic virus) reference strain
TRM3_HHV8P
Human herpesvirus 8 type P (isolate GK18) (HHV-8) (Kaposi's sarcoma-associated herpesvirus) reference strain
TRM3_PSHV1
Psittacid herpesvirus 1 (isolate Amazon parrot/-/97-0001/1997) (PsHV-1) (Pacheco's disease virus) reference strain
TRM3_SHV21
Saimiriine herpesvirus 2 (strain 11) (SaHV-2) (Herpesvirus saimiri) reference strain
TRM3_VZVD
Varicella-zoster virus (strain Dumas) (HHV-3) (Human herpesvirus 3) reference strain
TRM3_EBVG
Epstein-Barr virus (strain GD1) (HHV-4) (Human gammaherpesvirus 4)
TRM3_EHV1V
Equine herpesvirus 1 (strain V592) (EHV-1) (Equine abortion virus)
TRM3_ELHVK
Elephantid herpesvirus 1 (isolate Asian elephant/Berlin/Kiba/1998) (EIHV-1) (Elephant endotheliotropic herpesvirus)

1 entry

DNA maturase A (DNA-packaging protein A) (GP18)

VDMA_BPT3
Enterobacteria phage T3 (Bacteriophage T3)

1 entry

Putative ubiquitin thioesterase L96 (EC 3.4.19.12)

VL96_IRV1
Tipula iridescent virus (TIV) (Insect iridescent virus type 1)

2 entries

Probable terminase, endonuclease subunit (ORF19)

Select_allDeselect_all
VPM_BPHC1
Haemophilus phage HP1 (strain HP1c1) (Bacteriophage HP1) reference strain
VPM_BPP2
Escherichia phage P2 (Bacteriophage P2) reference strain

Terminase, endonuclease subunit (GpM)

2 entries

Probable terminase, ATPase subunit (ORF16)

Select_allDeselect_all
VPP_BPHC1
Haemophilus phage HP1 (strain HP1c1) (Bacteriophage HP1) reference strain
VPP_BPP2
Escherichia phage P2 (Bacteriophage P2) reference strain

Terminase, ATPase subunit (GpP)

1 entry

Probable DNA-packaging protein (Terminase)

VTER_ICHVA
Ictalurid herpesvirus 1 (strain Auburn) (IcHV-1) (Channel catfish herpesvirus) reference strain