Peduoviridae (taxid:2946167)

VIRION

Non-enveloped, head-tail structure with Myo-type morphology. The icosahedral head is about 60 nm, with a T=7 dextro symmetry , composed of 72 capsomers. The tail is contractile, about 135 x 18 nm, has 6 short kinked fibers.

GENOME

Linear, dsDNA genome of about 34 kb, encoding for approximately 45 proteins. The genome has cohesive ends (cos sites).

GENE EXPRESSION

Genes are transcribed by operons.

ENZYMES

REPLICATION

CYTOPLASMIC

  1. Adsorption: the phage attaches to the target cell through its tail fibers.
  2. Ejection of the viral DNA into host cell cytoplasm by contraction of the tail sheath.
  3. Transcription and translation of early genes.
  4. Synthesis of linear concatemers copies of viral DNA by rolling circle. Transcription and translation of late genes.
  5. Assembly of an empty procapsid and packaging of the genome.
  6. Viral tail fibers assembly and viral tail assembly.
  7. Mature virions are released from the cell by lysis.

Matching UniProtKB/Swiss-Prot entries

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99 entries grouped by strain

41 entries

Haemophilus phage HP1 (strain HP1c1) (Bacteriophage HP1) reference strain

Select_allDeselect_all
VINT_BPHC1 Integrase (EC 2.7.7.-) (EC 3.1.-.-)
DAM_BPHC1 DNA N-6-adenine-methyltransferase (DAM) (EC 2.1.1.72) (ORF13) (Orphan methyltransferase M.HinHP1Dam) ...
SCAF_BPHC1 Capsid assembly scaffolding protein (Gene product 17) (Gp17) (Head morphogenesis protein) (Scaffold ...
ENLYS_BPHC1 SAR-endolysin (EC 3.2.1.17) (Endolysin) (Lysis protein) (Lysozyme) (Muramidase)
RPC1_BPHC1 Repressor protein CI
REP_BPHC1 Replication protein (EC 3.1.-.-)
PORTL_BPHC1 Probable portal protein (ORF15)
CAPSD_BPHC1 Major capsid protein (Gene product 18) (gp18) (Major head protein) (ORF18)
HOLIN_BPHC1 Holin (Pinholin)
FIB31_BPHC1 Probable tail fiber protein (Gene product 31) (gp31) (ORF31)
YO01_BPHC1 Uncharacterized 23.2 kDa protein in int-C1 intergenic region (ORF1)
YO02_BPHC1 Uncharacterized 7.9 kDa protein in int-C1 intergenic region (ORF16) (ORF2)
YO03_BPHC1 Uncharacterized 8.9 kDa protein in int-C1 intergenic region (ORF17) (ORF3)
YO04_BPHC1 Uncharacterized 8.9 kDa protein in int-C1 intergenic region (ORF18) (ORF4)
VCOX_BPHC1 Regulatory protein cox
YO05_BPHC1 Uncharacterized 19.2 kDa protein in cox-rep intergenic region (ORF21) (ORF5)
YO06_BPHC1 Uncharacterized 14.1 kDa protein in cox-rep intergenic region (ORF22) (ORF6)
YO10_BPHC1 Uncharacterized 11.1 kDa protein in rep-hol intergenic region (ORF10)
YO11_BPHC1 Uncharacterized 8.3 kDa protein in rep-hol intergenic region (ORF11)
YO12_BPHC1 Uncharacterized 18.2 kDa protein in rep-hol intergenic region (ORF12)
YO14_BPHC1 Uncharacterized 14.9 kDa protein in rep-hol intergenic region (ORF14)
VPP_BPHC1 Probable terminase, ATPase subunit (ORF16)
VPM_BPHC1 Probable terminase, endonuclease subunit (ORF19)
VPL_BPHC1 Probable head completion/stabilization protein (ORF20)
YO21_BPHC1 Uncharacterized 19.2 kDa protein in rep-hol intergenic region (ORF21)
YO22_BPHC1 Uncharacterized 26.0 kDa protein in rep-hol intergenic region (ORF22)
YO23_BPHC1 Putative tail sheath protein (ORF23)
YO24_BPHC1 Putative tail tube protein (ORF24)
YO25_BPHC1 Uncharacterized 13.1 kDa protein in lys 3'region (ORF25)
YO26_BPHC1 Uncharacterized 11.3 kDa protein in lys 3'region (ORF26)
TMP_BPHC1 Probable tape measure protein (TMP) (Gene product 27) (gp27)
YO28_BPHC1 Uncharacterized 12.7 kDa protein in lys 3'region (ORF28)
BP29_BPHC1 Putative baseplate protein gp29 (Gene 29 protein) (Gp29)
TAIL1_BPHC1 Putative tail protein gp30 (Gene product 30) (gp30)
YO32_BPHC1 Uncharacterized 23.3 kDa protein in lys 3'region (ORF32)
YO33_BPHC1 Uncharacterized 28.3 kDa protein in lys 3'region (ORF33)
YO34_BPHC1 Uncharacterized 20.8 kDa protein in lys 3'region (ORF34)
YO35_BPHC1 Uncharacterized 58.7 kDa protein in lys 3'region (ORF35)
YO07_BPHC1 Uncharacterized 7.3 kDa protein in cox-rep intergenic region (ORF23) (ORF7)
YO08_BPHC1 Uncharacterized 10.8 kDa protein in cox-rep intergenic region (ORF24) (ORF8)
YO09_BPHC1 Uncharacterized 9.7 kDa protein in cox-rep intergenic region (ORF25) (ORF9)

39 entries

Escherichia phage P2 (Bacteriophage P2) reference strain

Select_allDeselect_all
VOLD_BPP2 Old nuclease (EC 3.1.11.3) (Exodeoxyribonuclease Old) (Overcoming lysogenization defect protein) ...
SCAF_BPP2 Capsid assembly scaffolding protein (Gene product O) (GpO) (Head morphogenesis protein) (Scaffold ...
SPIKE_BPP2 Spike protein (Baseplate assembly protein gpV) (Gene V protein) (GpV)
VINT_BPP2 Integrase (EC 2.7.7.-) (EC 3.1.-.-)
ENLYS_BPP2 Endolysin (EC 4.2.2.n2) (Lysis protein) (Lysozyme) (Protein gpK) (Transglycosylase)
HOLIN_BPP2 Holin
TAPFS_BPP2 Tail assembly protein E' (Gene product E') (gpE') (Tail assembly chaperone) (TAC)
TAP_BPP2 Tail assembly protein E (Gene product E) (gpE) (Tail assembly chaperone) (TAC)
TMP_BPP2 Probable tape measure protein (TMP) (Gene product T) (gpT)
VCOX_BPP2 Regulatory protein cox
VPB_BPP2 Replication gene B protein (GpB)
VOGR_BPP2 Late control protein ogr
BPD_BPP2 Probable baseplate hub protein (Gene D protein) (GpD)
TSP_BPP2 Tail sheath protein (TSP) (Major tail sheath protein) (Protein FI)
TUBE_BPP2 Tail tube protein (TTP) (Protein FII)
VPL_BPP2 Head completion/stabilization protein (GpL)
VPM_BPP2 Terminase, endonuclease subunit (GpM)
CAPSD_BPP2 Capsid proteins (GpN) [Cleaved into: Minor capsid protein H1; Minor capsid protein H2; Major capsid ...
VPP_BPP2 Terminase, ATPase subunit (GpP)
PORTL_BPP2 Probable portal protein (GpQ)
TFA_BPP2 Probable tail fiber assembly protein (GpG)
FIBH_BPP2 Probable tail fiber protein (GpH)
BPI_BPP2 Baseplate protein I (Gene I protein) (GpI)
VPS_BPP2 Tail completion protein S (GpS)
BPJ_BPP2 Baseplate protein J (Gene J protein) (GpJ)
BPW_BPP2 Baseplate protein W (Gene W protein) (GpW)
ANTIH_BPP2 Putative antiholin (Protein lysA)
SPAN1_BPP2 Probable spanin, inner membrane subunit (i-spanin) (Protein lysB)
BPX_BPP2 Baseplate protein X (Gene X protein) (GpX)
VPA_BPP2 Replication gene A protein (EC 3.1.-.-) (GpA)
SPAN2_BPP2 Probable spanin, outer lipoprotein subunit (Protein lysC)
RPC_BPP2 Repressor protein C
VPR_BPP2 Tail completion protein R (GpR)
YSV_BPP2 Uncharacterized 30.4 kDa protein in S-V intergenic region (ORF-30)
YO80_BPP2 Uncharacterized 8.3 kDa protein in GpA 5'region (ORF1)
YO81_BPP2 Uncharacterized 11.3 kDa protein in GpA 5'region (ORF2)
YO82_BPP2 Uncharacterized 8.2 kDa protein in gpA 5'region (ORF3)
YO83_BPP2 Uncharacterized 10.2 kDa protein in GpA 5'region (ORF4)
YO91_BPP2 Uncharacterized 12.9 kDa protein in GpA 3'region (ORF5)

16 entries

Escherichia phage 186 (Bacteriophage 186) reference strain

Select_allDeselect_all
VINT_BP186 Integrase (EC 2.7.7.-) (EC 3.1.-.-)
TUM_BP186 SOS operon TUM protein (ORF95 protein) (Protein TUM95)
VPA_BP186 Replication gene A protein (EC 3.1.-.-) (GpA)
RPC1_BP186 Repressor protein CI
RPC2_BP186 Regulatory protein CII
BPD_BP186 Probable baseplate hub protein (Gene D protein) (GpD) (Late control gene D protein)
VAPL_BP186 Protein apl
CP81_BP186 Uncharacterized exonuclease CP81 (EC 3.1.-.-)
CP69_BP186 Uncharacterized 8.4 kDa protein
VPB_BP186 Late control gene B protein (GpB)
VFIL_BP186 Protein fil
VDHR_BP186 Protein dhr
CP79_BP186 Uncharacterized 8.8 kDa protein in GpA 5'region
CP80_BP186 Uncharacterized 8.5 kDa protein in gpA 5'region
CP83_BP186 Uncharacterized 10.4 kDa protein in GpA 5'region
CP84_BP186 Uncharacterized 37.8 kDa protein in gpa 5'region

3 entries

Serratia phage KSP20 (Serratia marcescens bacteriophage KSP20)

Select_allDeselect_all
TAILC_BPSK2 Major tail tube protein (GpFII-like protein) (Virion protein C)
CAPSD_BPSK2 Major capsid protein (Major capsid protein B) (Major head protein)
TSP_BPSK2 Major tail sheath protein (Virion protein A)