Rudiviridae (taxid:157897)

VIRION

image

Non-enveloped, rod-shaped, rigid, with three tail fibers at either end.

GENOME

Linear dsDNA genome of 32-35 kb. At both ends, there are inverted terminal repeats as well as seven direct repeats. The two strands of the linear genomes are covalently linked.

GENE EXPRESSION

The genome encodes 45 to 54 ORFs.

Enzymes

  • Crossover junction endodeoxyribonuclease [121]
  • Glycosyltransferase [335]

REPLICATION

CYTOPLASMIC

  1. Adsorption: the phage attaches to target cell
  2. Injection: viral DNA is injected in host cell cytoplasm
  3. Transcription and translation of early genes
  4. Replication of genomic DNA
  5. Transcription and translation of late genes
  6. Genomic DNA is packaged in new virions
  7. Mature virions are released from the cell by budding
DB LINKS image image

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TAXONOMY Baltimore Group I: dsDNA viruses
Realm: Adnaviria
Class: Tokiviricetes
Order: Ligamenvirales
Family: Rudiviridae
Genus: Rudivirus
ETYMOLOGY Rudi: from latin, "small rod". Referring to the virion shape.
SPECIES
Sulfolobus islandicus rod-shaped virus 2
 Acidianus rod-shaped virus 1
 Sulfolobus islandicus rod-shaped virus 1
REFERENCE STRAIN Sulfolobus islandicus rod-shaped virus 1
Sequence | Genome assembly | Proteome

Host

NATURAL HOSTS Thermophilic archaea Sulfolobus islandicus

Ecology and disease

GEOGRAPHY Iceland
ASSOCIATED DISEASES
TRANSMISSION Passive diffusion through medium
ANTIVIRAL DRUGS

Matching UniProtKB/Swiss-Prot entries

(all links/actions below point to uniprot.org website)

45 entries grouped by strain

43 entries

Sulfolobus islandicus rod-shaped virus 1 (SIRV-1) (Sulfolobus virus SIRV-1) reference strain

Select_allDeselect_all
Y1070_SIRV1 Uncharacterized protein 1070
DUT_SIRV1 Probable deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) (EC 3.6.1.23) (dUTP ...
HJC_SIRV1 Crossover junction endodeoxyribonuclease (EC 3.1.21.10) (Holliday junction resolvase)
Y98_SIRV1 Uncharacterized protein 98
Y510_SIRV1 Uncharacterized protein 510
Y399_SIRV1 Uncharacterized protein 399
Y56_SIRV1 Uncharacterized protein 56

pdb 2X48

Y90_SIRV1 Uncharacterized protein 90
Y75_SIRV1 Uncharacterized protein 75
Y252_SIRV1 Uncharacterized protein 252
Y241_SIRV1 Uncharacterized protein 241
Y112_SIRV1 Uncharacterized protein 112
Y95_SIRV1 Uncharacterized protein 95
Y90B_SIRV1 Uncharacterized protein 90B
Y356_SIRV1 Uncharacterized protein 356
Y209_SIRV1 Uncharacterized protein 209
Y268_SIRV1 Uncharacterized protein 268
Y158B_SIRV1 Uncharacterized protein 158B
Y417_SIRV1 Uncharacterized protein 417
Y562_SIRV1 Uncharacterized protein 562
Y114_SIRV1 Uncharacterized protein 114

pdb 2X4I; 6SCF

Y74_SIRV1 Uncharacterized protein 74
Y154_SIRV1 Uncharacterized protein 154
Y110_SIRV1 Uncharacterized protein 110
Y84_SIRV1 Uncharacterized protein 84
Y64_SIRV1 Uncharacterized protein 64
Y335_SIRV1 Uncharacterized glycosyltransferase 335 (EC 2.4.-.-)
Y70_SIRV1 Uncharacterized zinc finger protein 70
CAPSD_SIRV1 Putative capsid protein
Y101_SIRV1 Uncharacterized protein 101
Y179_SIRV1 Uncharacterized protein 179
Y91_SIRV1 Uncharacterized protein 91
Y59_SIRV1 Uncharacterized protein 59
Y81_SIRV1 Uncharacterized protein 81
Y207_SIRV1 Uncharacterized protein 207
Y440_SIRV1 Uncharacterized protein 440
Y131_SIRV1 Uncharacterized protein 131

pdb 2X5G; 2X5H; 2X5T

Y117_SIRV1 Uncharacterized protein 117
Y56B_SIRV1 Uncharacterized protein 56B

pdb 2KEL

Y306_SIRV1 Uncharacterized protein 306
Y105_SIRV1 Uncharacterized protein 105
Y76_SIRV1 Uncharacterized protein 76
Y102_SIRV1 Uncharacterized protein 102

1 entry

Saccharolobus solfataricus rod-shaped virus 1 (SSRV1) reference strain

CAPSD_SSRV1 Major capsid protein (Gp11)

pdb 6WQ0

1 entry

Sulfolobus islandicus rod-shaped virus 2 (SIRV2) (Sulfolobus virus SIRV-2)

CAPSD_SIRV2 Major capsid protein

pdb 3J9X