Tutorial |
Core content:
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UniProtKB Swiss-Prot protein entries for this viral
... ... see entries either by protein name, or by strains. ... ... entries can be found. Protein DB links to UniProtKB ... ... to UniProtKB list of protein entries resources ... ... an Ebolavirus GP protein sequence to the ... ... and choose reorder by protein to get a list of ... ... for any viral protein set, and use it to map ... ... Ebolavirus GP protein sequence to the annotated ... ... of the page catch the sequence annotation (Features) ... ... to a new laboratory sequence, by inserting any user ... ... by inserting any user sequence into this alignment. ... ... , users can paste any sequence in FASTA format, and ... ... then align the new sequence to the UniProtKB ... ... 75AC12 handling and alignment tool Alignment of any ... ... and alignment tool Alignment of any viral proteins ... ... family. To obtain an alignment of GP Ebolavirus ... ... displays a ClustalW alignment of the selected ... ... sequences. The alignment displays conserved ... ... region appears on the alignment, sites will colour in ... ... at the left of the alignment, then reaching ... ... access an annotated alignment for any viral protein ... |
Structure predictions |
Core content:
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ESMfold Web resource Protein language model Max
... ... shows the name of the protein, and a link to the ... ... of predicted viral protein structures Rachel ... ... hidden Birth of protein folds and functions in ... ... database of virus protein structure predictions ... ... hidden Multiple Protein Structure Alignment at ... ... ColabFold making protein folding accessible to ... ... Fast and accurate protein structure search with ... ... of atomic-level protein structure with a ... ... restricted, while the sequence itself is often so ... ... Structural alphabet sequence MSA Oct 2023 foldtree ... ... Foldseek Structure alignment search Structural ... ... Protein Structure Alignment at Scale with ... |
Virology links |
Core content:
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UniProt protein sequences of all
... ... comparative host HIV-1 protein interaction network ... ... sequences, protein sequences structures ... ... genomes and protein sequence structures ... ... PIRSpred For HIV-1 protein-inhibitor resistance ... ... classifying viral protein modules web all ... ... Organizes homologous protein families from animal ... ... of data (sequences, protein structures, epitopes, ... ... RNA virus database Sequence analysis tools and ... ... index HIV-1 databases sequence, vaccine, drug ... ... information as well as Sequence Matcher, Genotyper and ... ... screening in HIV sequence laboratory download ... ... DB For HTLV-1 sequence management and data ... ... Catalogs influenza sequence and epitope ... ... IVDB Hosts influenza sequence data, Q-filter system ... ... phylogenetic and sequence distribution tools web ... ... HCV Database Contains sequence data and immunological ... ... metadata based sequence retrieval and analysis ... ... metadata based sequence retrieval and analysis ... ... genomes and protein sequence structures web HPV ... ... and amino acid sequence analysis platform ... ... families genera with sequence data web all viruses ... ... of viral small RNA sequence datasets download all ... ... as well as BLAST, alignment, phylogenetic and ... ... analysis tools (BLAST, alignment, phylogeny) for ... |
News archive |
Core content:
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Interactome,links and protein annotation has been
... ... been updated. Spike protein analysis has allowed ... ... and virus exit. Protein data popups (example ... ... for a quick protein overview from ... ... , Proteins by strain , Protein by name . Additional ... ... non-structural protein Mourad Belhouchet, ... ... 2015 In the swarm of sequence data and databases, ... ... 6096 Reference sequence helps answering the ... ... BLAST and multiple sequence alignment . Host-virus ... ... and multiple sequence alignment . Host-virus ... |