Secoviridae

Molecular biology

VIRION

Non-enveloped, icosahedral, 25-30 nm in diameter, with icosahedral pseudo T=3 symmetry. The three jell rolls, which are characteristic of picornavirales capsid proteins (CP), can be present in one large CP with 3 jelly rolls domains, two CP (one large with two jelly rolls domains and one small a single domain), or three CP.

GENOME

Segmented, bipartite linear ssRNA(+) genome composed of RNA-1=6-8 kb and RNA-2=4-7 kb. Each genomic segment has a VPg linked to its 5’ end and a 3’ poly(A) tract.

GENE EXPRESSION

The virion RNA is infectious and serves as both the genome and mRNA.
RNA-1 and RNA-2 are translated into two polyproteins, which are then processed into functional proteins. RNA-1 encodes proteins necessary for replication, while RNA-2 encodes one or two capsid proteins and product(s) involved in cell-to-cell movement.

REPLICATION

CYTOPLASMIC

  1. Virus penetrates into the cell.
  2. Uncoating, and release of the viral genomic RNA into the cytoplasm.
  3. Expression of the RNA-1 polyprotein products that promote the replication of genomic RNAs in the cytoplasm.
  4. Negative-sense complementary ssRNAs are synthesized using the genomic RNAs as a templates.
  5. New genomic RNAs are synthesized using the negative-sense RNAs as templates.
  6. Formation of new virus particles.

Matching UniProtKB/Swiss-Prot entries

52 entries grouped by protein

All proteins are shown (view only 40 complete proteome entries)

Capsid protein (Coat protein)


CAPSD_TRSVTobacco ringspot virus (TobRV) (TRSV)

Uncharacterized protein ORF1


ORF1_TOTVTomato torrado virus (isolate Solanum lycopersicum/Spain/PRIToTV0301/-) (ToTV) reference strain

RNA1 polyprotein (P1)

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POL1_BBWVSBroad bean wilt virus 1 (strain Spinach/United States/ATCC PV-132/1963) (BBWV-1) reference strain

RNA1 polyprotein (Genome polyprotein B)

POL1_CRLVPCherry rasp leaf virus (isolate Potato/United States) (CRLV) reference strain

RNA1 polyprotein (Genome polyprotein B) (P1)

POL1_CPMVSCowpea mosaic virus (strain SB) (CPMV) reference strain

RNA1 polyprotein (Genome polyprotein B) (P1)

POL1_SDVS5Satsuma dwarf virus (isolate Satsuma mandarin/Japan/S-58/1977) (SDV) reference strain
POL1_TORVRTomato ringspot virus (isolate raspberry) (ToRSV) reference strain
POL1_TOTVTomato torrado virus (isolate Solanum lycopersicum/Spain/PRIToTV0301/-) (ToTV) reference strain

RNA1 polyprotein

POL1_ARMVNArabis mosaic virus (isolate NW) (ArMV)
POL1_BPMVBean-pod mottle virus (strain Kentucky G7) (BPMV)

RNA1 polyprotein (Genome polyprotein B) (P1)

POL1_BRSVBeet ringspot virus (BRSV) (Tomato black ring virus (strain S))
POL1_BRAVBlackcurrant reversion association virus (BRAV)
POL1_CPSMVCowpea severe mosaic virus (strain DG) (CPSMV)

RNA1 polyprotein (Genome polyprotein B) (P1)

POL1_CNSVCycas necrotic stunt virus (CNSV)
POL1_GCMVGrapevine chrome mosaic virus (GCMV) (Hungarian grapevine chrome mosaic virus)
POL1_GFLVGrapevine fanleaf virus (GFLV)
POL1_RRVCRaspberry ringspot virus (strain cherry) (RpRSV)
POL1_RCMVRed clover mottle virus (RCMV)

RNA1 polyprotein (Genome polyprotein B) (P1)

POL1_TRSVBTobacco ringspot virus (strain Bud Blight) (TobRV) (TRSV)
POL1_TBRVMTomato black ring virus (strain MJ) (TBRV)

RNA2 polyprotein (P2)

Select_all Deselect_all  
POL2_BBWVSBroad bean wilt virus 1 (strain Spinach/United States/ATCC PV-132/1963) (BBWV-1) reference strain

RNA2 polyprotein (Genome polyprotein M)

POL2_CRLVPCherry rasp leaf virus (isolate Potato/United States) (CRLV) reference strain
POL2_CPMVSCowpea mosaic virus (strain SB) (CPMV) reference strain

RNA2 polyprotein (Genome polyprotein M) (P2)

POL2_SDVS5Satsuma dwarf virus (isolate Satsuma mandarin/Japan/S-58/1977) (SDV) reference strain
POL2_TORVRTomato ringspot virus (isolate raspberry) (ToRSV) reference strain
POL2_TOTVTomato torrado virus (isolate Solanum lycopersicum/Spain/PRIToTV0301/-) (ToTV) reference strain

RNA2 polyprotein

POL2_APMVAndean potato mottle virus (APMV)

RNA2 polyprotein (Genome polyprotein M) (P2)

POL2_ARMVNArabis mosaic virus (isolate NW) (ArMV)
POL2_ARMVSArabis mosaic virus (isolate Syrah) (ArMV)
POL2_BPMVBean-pod mottle virus (strain Kentucky G7) (BPMV)

RNA2 polyprotein (Genome polyprotein M) (P2)

POL2_BRSVBeet ringspot virus (BRSV) (Tomato black ring virus (strain S))
POL2_BRAVBlackcurrant reversion association virus (BRAV)
POL2_CPSMVCowpea severe mosaic virus (strain DG) (CPSMV)

RNA2 polyprotein (Genome polyprotein M) (P2)

POL2_CNSVCycas necrotic stunt virus (CNSV)
POL2_GCMVGrapevine chrome mosaic virus (GCMV) (Hungarian grapevine chrome mosaic virus)
POL2_GFLVGrapevine fanleaf virus (GFLV)
POL2_GFLVNGrapevine fanleaf virus (isolate NW) (GFLV)
POL2_RRVSRaspberry ringspot virus (strain S) (RpRSV)
POL2_RRVCRaspberry ringspot virus (strain cherry) (RpRSV)
POL2_RCMVRed clover mottle virus (RCMV)

RNA2 polyprotein (Genome polyprotein M) (P2)

POL2_TRSVTobacco ringspot virus (TobRV) (TRSV)

Genome polyprotein

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POLG_PYFV1Parsnip yellow fleck virus (isolate P-121) (PYFV) reference strain
POLG_RTSVARice tungro spherical virus (strain A) (RTSV) (Rice tungro spherical waikavirus) reference strain
POLG_RTSVTRice tungro spherical virus (strain Vt6) (RTSV) (Rice tungro spherical ...

Protein P3

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VP3_ARMVArabis mosaic virus (ArMV)
VP3_GFLVGrapevine fanleaf virus (GFLV)

Satellite RNA 48 kDa protein

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VS48_BRSVBeet ringspot virus (BRSV) (Tomato black ring virus (strain S))
VS48_TBRVCTomato black ring virus (strain C) (TBRV)
VS48_TBRVETomato black ring virus (strain E) (TBRV)
VS48_TBRVLTomato black ring virus (strain L) (TBRV)

Uncharacterized protein in RNA2


YR21_TORVRTomato ringspot virus (isolate raspberry) (ToRSV) reference strain

Uncharacterized protein in RNA2


YR22_TORVRTomato ringspot virus (isolate raspberry) (ToRSV) reference strain