Influenza C virus

Molecular biology

VIRION

Enveloped. Usually rounded but can be filamentous. The virions are 80-120 nm in diameter.

GENOME

segmented ssRNA(-) linear genome, encapsidated by nucleoprotein (NP) Contains 7 segments coding for 9 proteins. Segments size range from 0.9 to 2.3 kb. Genome total size is about 10 Kb

GENE EXPRESSION

Viral RNA polymerase (PB1, PB2 and PA) transcribes one mRNA from each genome segment. Transcription is primed by cap cleaved from cellular mRNAS by Cap snatching. mRNA are polyadenylated by the viral polymerase stuttering on a poly U track. NS mRNA can be spliced, giving rise to mRNA coding NEP protein. Polyprotein p42 is cleaved in M1 and CM2 proteins.

REPLICATION

NUCLEUS

  1. Virus attaches to sialic acid receptor through HEF protein and is endocytosed in the host cell.
  2. Endosome acidification induces fusion of virus membrane with the vesicle membrane; encapsidated RNA segments migrate to the nucleus.
  3. Transcription of genomic segments by the viral polymerase produces mRNAs.
  4. genomic (-)RNA is replicated through antigenomic (+)RNA intermediate.
  5. High level of M1 protein induces genomes segments export from nucleus by NEP protein.
  6. Virus assembly and budding occurs at the plasma membrane.

Matching UniProtKB/Swiss-Prot entries

31 entries grouped by protein

All proteins are shown (view only 8 complete proteome entries)

Hemagglutinin-esterase-fusion glycoprotein (HEF) (EC 3.1.1.53)

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HEMA_INCAAInfluenza C virus (strain C/Ann Arbor/1/1950) reference strain
HEMA_INCCAInfluenza C virus (strain C/California/1978)
HEMA_INCJHInfluenza C virus (strain C/Johannesburg/1/1966)
HEMA_INCNBInfluenza C virus (strain C/Nara/2/1985)
HEMA_INCYBInfluenza C virus (strain C/Yamagata/4/1988)

Polyprotein p42

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MAT_INCAAInfluenza C virus (strain C/Ann Arbor/1/1950) reference strain
MAT_INCCAInfluenza C virus (strain C/California/1978)
MAT_INCHYInfluenza C virus (strain C/Hyogo/1/1983)
MAT_INCJJInfluenza C virus (strain C/JJ/1950)
MAT_INCTAInfluenza C virus (strain C/Taylor/1233/1947)

Nucleoprotein (Nucleocapsid protein) (Protein N)

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NCAP_INCAAInfluenza C virus (strain C/Ann Arbor/1/1950) reference strain
NCAP_INCCAInfluenza C virus (strain C/California/1978)
NCAP_INCJHInfluenza C virus (strain C/Johannesburg/1/1966)

Nuclear export protein (NEP) (Non-structural protein 2) (NS2)

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NEP_INCAAInfluenza C virus (strain C/Ann Arbor/1/1950) reference strain
NEP_INCCAInfluenza C virus (strain C/California/1978)
NEP_INCHYInfluenza C virus (strain C/Hyogo/1/1983)
NEP_INCY6Influenza C virus (strain C/Yamagata/1964)

Non-structural protein 1 (NS1) (NS1C)

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NS1_INCAAInfluenza C virus (strain C/Ann Arbor/1/1950) reference strain
NS1_INCCAInfluenza C virus (strain C/California/1978)
NS1_INCHYInfluenza C virus (strain C/Hyogo/1/1983)
NS1_INCY6Influenza C virus (strain C/Yamagata/1964)

Polymerase acidic protein (Polymerase 3) (RNA-directed RNA polymerase subunit P2)

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PA_INCAAInfluenza C virus (strain C/Ann Arbor/1/1950) reference strain
PA_INCJJInfluenza C virus (strain C/JJ/1950)
PA_INCJHInfluenza C virus (strain C/Johannesburg/1/1966)

Polymerase basic protein 2 (RNA-directed RNA polymerase subunit P3)

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PB2_INCAAInfluenza C virus (strain C/Ann Arbor/1/1950) reference strain
PB2_INCBEInfluenza C virus (strain C/Berlin/1/1985)
PB2_INCJJInfluenza C virus (strain C/JJ/1950)
PB2_INCJHInfluenza C virus (strain C/Johannesburg/1/1966)

RNA-directed RNA polymerase catalytic subunit (EC 2.7.7.48) (Polymerase basic protein 1) (PB1) (RNA-directed RNA polymerase subunit P1)

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RDRP_INCAAInfluenza C virus (strain C/Ann Arbor/1/1950) reference strain
RDRP_INCJJInfluenza C virus (strain C/JJ/1950)
RDRP_INCJHInfluenza C virus (strain C/Johannesburg/1/1966)