Ribosomal frameshifting

Programmed Ribosomal frameshifting is an alternate mechanism of translation to merge proteins encoded by two overlapping open reading frames. The frameshift occurs at low frequency and consists of ribosomes slipping by one base in either the 5’(-1) or 3’(+1) directions during translation. Some viruses contains both a +1 and a -1 ribosomal frameshifts

-1 Ribosomal frameshift

All cis-acting frameshift signals encoded in mRNAs are minimally composed of two functional elements: a heptanucleotide “slippery sequence” conforming to the general form X XXY YYZ, followed by a RNA structural element, usually a H-type RNA pseudoknot, positioned an optimal number of nucleotides (5 to 9) downstream. Mechanistically, the ribosome is stalled on the slippery sequence by the pseudoknot structure in 3’. In about 10% cases, the ribosome will backtrack one nucleotide, creating one or more mismatchs between tRNAs and mRNA. Translation resolves on the backtracked ribosome in the -1 frame.

Family Genus Virus Type RefSeq .......... XXXYYYZ .......... Frameshift position Freq Ref
-1/-2 FRAMESHIFTS
Totiviridae Giardiavirus Giardia lamblia virus -1 NC_003555 CGUGCGCCAU CCCUUUA UCCGAUCGUG 2871
Totivirus Saccharomyces cerevisiae virus L-A -1 NC_003745 GUACUCAGCA GGGUUUA GGAGUGGUAG 1964
Astroviridae Avastrovirus Turkey astrovirus 1 -1 NC_002470 CUACGUGUUC AAAAAAC UAGAUAGUCA 3307
Mamastrovirus Human astrovirus 1 -1 NC_001943 ACAAGGCCCC AAAAAAC UACAAAGGGC 2845
Luteoviridae Enamovirus Pea enation mosaic virus-1 -1 NC_003629 CCAGACGCUC GGGAAAC GGAUUAUUCC 2035
Luteovirus Barley yellow dwarf virus-PAV -1 NC_004750 TTGACTCTGT GGGUUUU AGAGGGGCTC 1159
Polerovirus Potato leafroll virus -1 NC_001747 CAAACAAGCC UUUAAAU GGGCAAGCGG 1774
Arteriviridae Arterivirus Equine arteritis virus -1 NC_002532 CAGUGAAUCA GUUAAAC UGAGAGCGCC 5405
Porcine reproductive and respiratory syndrome virus -2 NC_001961 UGAGCCGUCA GGUUUUU GACCUCGUCU 3887-3888
Coronaviridae Alphacoronavirus Human coronavirus 229E -1 NC_002645 AUAACAGUUA UUUAAAC GAGUCCGGGG 12520
Betacoronavirus Human SARS coronavirus -1 NC_004718 CAUCAACGUU UUUAAAC GGGUUUGCGG 13398
Gammacoronavirus Avian Infectious bronchitis virus -1 NC_002645 AUAAGAAUUA UUUAAAC GGGUACGGGG 12354
Bafinivirus White bream virus -1 NC_008516 AGCAGCCGCC UUUAAAC TGGAGGGCAG 14555 -
Torovirus Breda virus -1 NC_007447 CUGUUGGUGA UUUAAAC UGCUGAGAGA 14184 -
FLaviviridae Flavivirus West nile virus -1 NC_009942 UAUGAUUGAC CCUUUUC AGUUGGGCCU 3552 30-50%
Mesoniviridae Mesonivirus Alphamesonivirus 1 -1 NC_015668 GCACCCUUUG GAUUUUC CAAAGUGGGC 7841
Picornaviridae Cardiovirus Encephalomyocardidis virus -1 NC_001479 CAAGGAAACA GGUUUUC CAGACCCAAG 3998
Tombusviridae Dianthovirus Red clover necrotic mosaic virus -1 NC_003756 AAUCCCUUGA GGAUUUU UAGGCGGCGG 831
Retroviridae Alpharetrovirus Avian leukosis virus -1 NC_001408 UCCGCUUGAC AAAUUUA UAGGGAGGGC 2474
Betaretrovirus Mouse mammary tumor virus -1 NC_001503 CUGAAAAUUC AAAAAAC UUGUAAAGGG 2082
Deltaretrovirus Human T-lymphotropic virus 1 -1 NC_001436 UCCCACACCC AAAAAAC UCCAUAGGGG 1718
Lentivirus Human immunodeficiency virus 1 -1 NC_001802 GACAGGCUAA UUUUUUA GGGAAGAUCU 1637
Unclassified Sobemovirus Cocksfoot mottle sobemovirus -1 NC_002618 CAAUCCGGCC UUUAAAC UACCAGCGGG 1640
Umbravirus Groundnut rosette virus -1 NC_003603 CCGGGGCACA AAAUUUU UAGUUGGGGA 867
Myoviridae Mulikevirus Mu phage -2 NC_000929 CGCUGACACA AGAACGG GGGCGAGUGG 23960
Myoviridae P2likeviruses Enterobacteria phage P2 -1 NC_003603 CGGUAAGGUG GUCGGUU UUUUGUCGCC 19679
Siphoviridae Lambdalikevirus Phage lambda +1 NC_001416 AGAGCCUGUU UCUGCGG GAAAGTGTTC 10110
Togaviridae Alphavirus Sindbis virus +1 NC_001547 GCUGCCUGCC UUUUUUA GUGGUUCCGG 10028 10-18%

Source:Michael Bekaert, thesis (in french) etude du decalage de phase de lecture dans le genome de Saccharomyces cerevisiae

+1 ribosomal frameshift

This frameshift is mechanistically different from the -1. The ribosome stalls on a slippery sequence, making a long pause at a rare codon for which few tRNAs are available. This long pause can be resolved by a movement forward of one nucleotide, creating one or more mismatchs between tRNAs and mRNA. Translation resolves on the advanced ribosome in the +1 frame.

Family Genus Virus Type RefSeq .......... XXXYYYZ .......... Frameshift position Freq Ref
+1 FRAMESHIFTS (rare codon in yellow)
Orthomyxoviridae Influenzavirus A Influenzavirus A +1 NC_002022 UCUGGGAUUC CUUUCGU CAGUCCGAG 599
Totiviridae Leishmaniavirus Leishmania RNA virus 1-4 +1 NC_003601 Not Identified NA
Siphoviridae Lambdalikevirus Bacillus phage SPP1 +1 NC_004166 ACTGTTCCCG CTCCCC TAATGCGCC 11,111 ~10%

Matching UniProtKB/Swiss-Prot entries

535 entries grouped by strain (browse by keywords)

All proteins are shown (view only 401 complete proteome entries)

4 entries

Enterobacteria phage T7 (Bacteriophage T7) reference strain

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CAPSA_BPT7Major capsid protein 10A (Gene product 10A) (Gp10A) (Major head protein 10A)
CAPSB_BPT7Minor capsid protein 10B (Gene product 10B) (Gp10B) (Minor head protein 10B)
SGS_BPT7Protein suppressor of silencing (Gene product 5.5)
V5557_BPT7Fusion protein 5.5/5.7

3 entries

Human T-cell leukemia virus 1 (isolate Caribbea HS-35 subtype A) (HTLV-1) reference strain

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GAG_HTL1CGag polyprotein (Pr53Gag)
POL_HTL1CGag-Pro-Pol polyprotein (Pr160Gag-Pro-Pol)
PRO_HTL1CGag-Pro polyprotein (Pr76Gag-Pro)

3 entries

Human T-cell leukemia virus 2 (HTLV-2) reference strain

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GAG_HTLV2Gag polyprotein (Pr53Gag)
POL_HTLV2Gag-Pro-Pol polyprotein (Pr160Gag-Pro-Pol)
PRO_HTLV2Gag-Pro polyprotein (Pr76Gag-Pro)

3 entries

Human T-cell leukemia virus 3 (strain 2026ND) (HTLV-3) reference strain

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GAG_HTL32Gag polyprotein (Pr53Gag)
POL_HTL32Gag-Pro-Pol polyprotein (Pr160Gag-Pro-Pol)
PRO_HTL32Gag-Pro polyprotein (Pr76Gag-Pro)

3 entries

Mouse mammary tumor virus (strain C3H) (MMTV) reference strain

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GAG_MMTVCGag polyprotein
POL_MMTVCGag-Pro-Pol polyprotein
PRO_MMTVCGag-Pro polyprotein

2 entries

Avian infectious bronchitis virus (strain Beaudette) (IBV) reference strain

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R1AB_IBVBReplicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)
R1A_IBVBReplicase polyprotein 1a (pp1a) (ORF1a polyprotein)

2 entries

Avian leukosis virus RSA (RSV-SRA) (Rous sarcoma virus (strain Schmidt-Ruppin A)) reference strain

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GAG_RSVSAGag-Pro polyprotein
POL_RSVSAGag-Pro-Pol polyprotein

2 entries

Bat coronavirus HKU3 (BtCoV) (SARS-like coronavirus HKU3) reference strain

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R1AB_BCHK3Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)
R1A_BCHK3Replicase polyprotein 1a (pp1a) (ORF1a polyprotein)

2 entries

Bat coronavirus HKU4 (BtCoV) (BtCoV/HKU4/2004) reference strain

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R1AB_BCHK4Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)
R1A_BCHK4Replicase polyprotein 1a (pp1a) (ORF1a polyprotein)

2 entries

Bat coronavirus HKU5 (BtCoV) (BtCoV/HKU5/2004) reference strain

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R1AB_BCHK5Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)
R1A_BCHK5Replicase polyprotein 1a (pp1a) (ORF1a polyprotein)

2 entries

Bat coronavirus HKU9 (BtCoV) (BtCoV/HKU9) reference strain

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R1AB_BCHK9Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)
R1A_BCHK9Replicase polyprotein 1a (pp1a) (ORF1a polyprotein)

2 entries

Berne virus (BEV) reference strain

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R1AB_BEVReplicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)
R1A_BEVReplicase polyprotein 1a (pp1a) (ORF1a polyprotein)

2 entries

Breda virus 1 (BRV-1) reference strain

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R1AB_BRV1Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)
R1A_BRV1Replicase polyprotein 1a (pp1a) (ORF1a polyprotein)

2 entries

Cocksfoot mottle virus (isolate Dactylis glomerata/Norway/CfMV-NO/1995) (CfMV) reference strain

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P2A_CFMVNPolyprotein P2A
RDRP_CFMVNReplicase polyprotein P2AB

2 entries

Encephalomyocarditis virus (strain Rueckert) (EMCV) reference strain

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ALT2B_EMCVRProtein 2B*
POLG_EMCVRGenome polyprotein

2 entries

Escherichia phage Mu (Bacteriophage Mu) reference strain

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TAPFS_BPMUProbable tail assembly protein FS-gp41
TAP_BPMUProbable tail assembly protein gp41 (Gene product 41) (gp41) (Tail assembly ...

2 entries

Escherichia phage N15 (Bacteriophage N15) reference strain

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GT_BPN15Tail assembly protein GT (Gene product 15) (gp15) (Gene product GT) (gpGT) ...
G_BPN15Tail assembly protein G (Gene product 14) (gp14) (Minor tail protein G) (Tail ...

2 entries

Escherichia phage P2 (Bacteriophage P2) reference strain

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TAPFS_BPP2Tail assembly protein E' (Gene product E') (gpE') (Tail assembly chaperone) ...
TAP_BPP2Tail assembly protein E (Gene product E) (gpE) (Tail assembly chaperone) (TAC)

2 entries

Escherichia phage lambda (Bacteriophage lambda) reference strain

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GT_LAMBDTail assembly protein GT (Gene product GT) (gpGT) (Minor tail protein GT)
G_LAMBDTail assembly protein G (Gene product G) (gpG) (Minor tail protein G) (Tail ...

2 entries

Giardia lamblia virus (isolate Wang) (GLV) reference strain

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CAPSD_GLVWBMajor capsid protein (Gag protein) (Major coat protein)
RDRP_GLVWBProbable RNA-directed RNA polymerase (EC 2.7.7.48) (Gag-Pol protein)

2 entries

Grapevine leafroll-associated virus 3 (isolate United States/NY1) (GLRaV-3) (Grapevine leafroll-associated closterovirus (isolate 109)) reference strain

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R1AB_GLRV3Replicase polyprotein 1ab
R1A_GLRV3Replicase protein 1a

2 entries

Hepatitis C virus genotype 1a (isolate H) (HCV) reference strain

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F_HCVHF protein (Alternate reading frame protein/F-protein) (ARFP/F) (Frameshifted ...
POLG_HCVHGenome polyprotein

2 entries

Human SARS coronavirus (SARS-CoV) (Severe acute respiratory syndrome coronavirus) reference strain

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R1AB_CVHSAReplicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)
R1A_CVHSAReplicase polyprotein 1a (pp1a) (ORF1a polyprotein)

2 entries

Human astrovirus-1 (HAstV-1) reference strain

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NS1AB_HASV1Non-structural polyprotein 1AB
NS1A_HASV1Non-structural polyprotein 1A

2 entries

Human coronavirus 229E (HCoV-229E) reference strain

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R1AB_CVH22Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)
R1A_CVH22Replicase polyprotein 1a (pp1a) (ORF1a polyprotein)

2 entries

Human coronavirus HKU1 (isolate N1) (HCoV-HKU1) reference strain

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R1AB_CVHN1Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)
R1A_CVHN1Replicase polyprotein 1a (pp1a) (ORF1a polyprotein)

2 entries

Human coronavirus NL63 (HCoV-NL63) reference strain

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R1AB_CVHNLReplicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)
R1A_CVHNLReplicase polyprotein 1a (pp1a) (ORF1a polyprotein)

2 entries

Human immunodeficiency virus type 1 group M subtype A (isolate MAL) (HIV-1) reference strain

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GAG_HV1MAGag polyprotein (Pr55Gag)
POL_HV1MAGag-Pol polyprotein (Pr160Gag-Pol)

2 entries

Human immunodeficiency virus type 1 group M subtype B (isolate BH10) (HIV-1) reference strain

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GAG_HV1B1Gag polyprotein (Pr55Gag)
POL_HV1B1Gag-Pol polyprotein (Pr160Gag-Pol)

pdb 1A9M  1AJV  1AJX  1AXA  1BQM  1BQN  1D4H  1D4I  1D4J  1DLO  1DW6  1EBK  1EBW  1EBY  1EBZ  1EC0  1EC1  1EC2  1EC3  1EET  1G35  1GNM  1GNN  1GNO  1HAR  1HBV  1HEF  1HEG  1HIH  1HMV  1HNI  1HNV  1HOS  1HPS  1HPZ  1HQE  1HQU  1HRH  1HTE  1HTF  1HTG  1HVI  1HVK  1HVP  1HVU  1HYS  1IKV  1IKW  1IKX  1IKY  1J5O  1KJH  1MER  1MES  1MET  1MEU  1N5Y  1N6Q  1NPA  1NPV  1NPW  1QE1  1QMC  1R0A  1RDH  1RTD  1RVL  1RVM  1RVN  1RVO  1RVP  1RVQ  1RVR  1S6P  1S6Q  1S9E  1S9G  1SBG  1SUQ  1SV5  1T03  1T05  1T7K  1TV6  1TVR  1UWB  1W5V  1W5W  1W5X  1W5Y  1YT9  1ZP8  1ZPA  1ZSF  1ZSR  2AQU  2B5J  2B6A  2BAN  2BBB  2BE2  2EXF  2G69  2HB3  2HMI  2HNZ  2HS1  2HS2  2I4D  2I4U  2I4V  2I4W  2I4X  2I5J  2IAJ  2IC3  2IDW  2IEO  2JZW  2L45  2L46  2L4L  2UXZ  2UY0  2VG5  2VG6  2VG7  2X4U  2YKM  2YKN  2ZD1  2ZE2  3AVI  3BGR  3DLK  3GGA  3GGV  3GGX  3HVT  3IG1  3IRX  3IS9  3ISN  3ITH  3JSM  3JYT  3K2P  3K4V  3KLE  3KLF  3KLG  3KLH  3KLI  3NDT  3NU3  3NU4  3NU5  3NU6  3NU9  3NUJ  3NUO  3OK9  3PSU  3QAA  3QLH  3QO9  3TKG  3TKW  3TL9  3TLH  3V4I  3V6D  3V81  3ZPS  3ZPT  3ZPU  4COE  4CP7  4CPQ  4CPR  4CPS  4CPT  4CPU  4CPW  4CPX  4DG1  4G1Q  4G8G  4G8I  4G9D  4G9F  4H4M  4H4O  4I2P  4I2Q  4ICL  4ID5  4IDK  4IFV  4IFY  4IG0  4IG3  4KFB  4KKO  4KO0  4LSL  4LSN  4MFB  4O44  4O4G  4OJR  4PQU  4PUO  4PWD  4Q0B  4QAG  4R5P  4RW4  4RW6  4RW7  4RW8  4RW9  4U8W  4WE1  4YE3  4YHQ  4ZIP  4ZLS  5AGZ  5AH6  5AH7  5AH8  5AH9  5AHA  5AHB  5AHC  5BRY  5BS4  5C24  5C25  5C42  5CYM  5CYQ  5D3G  5FDL  5HBM  5HLF  5HP1  5HRO  5I3U  5I42  5J1E  5JFP  5JFU  5JG1  5TEP  5TER 

2 entries

Human immunodeficiency virus type 1 group M subtype B (isolate BRU/LAI) (HIV-1) reference strain

2 entries

Human immunodeficiency virus type 1 group M subtype B (isolate HXB2) (HIV-1) reference strain

2 entries

Human immunodeficiency virus type 1 group M subtype F1 (isolate 93BR020) (HIV-1) reference strain

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GAG_HV193Gag polyprotein (Pr55Gag)
POL_HV193Gag-Pol polyprotein (Pr160Gag-Pol)

2 entries

Human immunodeficiency virus type 1 group M subtype F1 (isolate VI850) (HIV-1) reference strain

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GAG_HV1VIGag polyprotein (Pr55Gag)
POL_HV1VIGag-Pol polyprotein (Pr160Gag-Pol)

2 entries

Human immunodeficiency virus type 1 group O (isolate ANT70) (HIV-1) reference strain

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GAG_HV1ANGag polyprotein (Pr55Gag)
POL_HV1ANGag-Pol polyprotein (Pr160Gag-Pol)

2 entries

Human immunodeficiency virus type 1 group O (isolate MVP5180) (HIV-1) reference strain

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GAG_HV1MVGag polyprotein (Pr55Gag)
POL_HV1MVGag-Pol polyprotein (Pr160Gag-Pol)

2 entries

Human immunodeficiency virus type 2 subtype A (isolate BEN) (HIV-2) reference strain

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GAG_HV2BEGag polyprotein (Pr55Gag)
POL_HV2BEGag-Pol polyprotein (Pr160Gag-Pol)

2 entries

Influenza A virus (strain A/Duck/Germany/1949 H10N7) reference strain

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PAX_I49A1Protein PA-X
PA_I49A1Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Goose/Guangdong/1/1996 H5N1 genotype Gs/Gd) reference strain

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PAX_I96A0Protein PA-X
PA_I96A0Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Puerto Rico/8/1934 H1N1) reference strain

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PAX_I34A1Protein PA-X
PA_I34A1Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Seal/Massachusetts/1/1980 H7N7) reference strain

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PAX_I80A2Protein PA-X
PA_I80A2Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Turkey/Minnesota/833/1980 H4N2) reference strain

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PAX_I80A8Protein PA-X
PA_I80A8Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Lettuce infectious yellows virus (isolate United States/92) (LIYV) reference strain

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R1AB_LIYV9Replicase polyprotein 1ab
R1A_LIYV9Replicase polyprotein 1a

2 entries

Murine coronavirus (strain 2) (MHV-2) (Murine hepatitis virus) reference strain

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R1AB_CVM2Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)
R1A_CVM2Replicase polyprotein 1a (pp1a) (ORF1a polyprotein)

2 entries

Murine coronavirus (strain A59) (MHV-A59) (Murine hepatitis virus) reference strain

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R1AB_CVMA5Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)
R1A_CVMA5Replicase polyprotein 1a (pp1a) (ORF1a polyprotein)

2 entries

Mycobacterium phage D29 (Mycobacteriophage D29) reference strain

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TAP25_BPMD2Tail assembly protein Gp25 (Gene 25 protein) (Gp25)
VG24_BPMD2Tail assembly protein Gp24 (Gene product 24) (Gp24) (Minor tail protein Gp24)

2 entries

Mycobacterium phage L5 (Mycobacteriophage L5) reference strain

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TAP25_BPML5Tail assembly protein Gp25 (Gene 25 protein) (Gp25)
VG24_BPML5Tail assembly protein Gp24 (Gene product 24) (Gp24) (Minor tail protein Gp24)

2 entries

Pea enation mosaic virus-1 (strain WSG) (PEMV-1) reference strain

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P1_PEMVWProtein P1 (Genome-linked protein precursor) (ORF1 protein)
RDRP_PEMVWProtein P1-P2

2 entries

Poinsettia latent virus (isolate Euphorbia pulcherrima/Germany/Siepen/2005) (PnLV) (Poinsettia cryptic virus) reference strain

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P1_PNLVGenome-linked protein precursor
RDRP_PNLVProtein P2-P3

2 entries

Porcine epidemic diarrhea virus (strain CV777) (PEDV) reference strain

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R1AB_PEDV7Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)
R1A_PEDV7Replicase polyprotein 1a (pp1a) (ORF1a polyprotein)

2 entries

Porcine reproductive and respiratory syndrome virus (strain Lelystad) (PRRSV) reference strain

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RPOA_PRRSLReplicase polyprotein 1ab (ORF1ab polyprotein)
RPOTF_PRRSLReplicase polyprotein 1TF (ORF1ab polyprotein)

2 entries

Porcine transmissible gastroenteritis coronavirus (strain Purdue) (TGEV) reference strain

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R1AB_CVPPUReplicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)
R1A_CVPPUReplicase polyprotein 1a (pp1a) (ORF1a polyprotein)

2 entries

Potato leafroll virus (strain Potato/Scotland/strain 1/1984) (PLrV) reference strain

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P1_PLRV1Protein P1 (69.7 kDa protein) (Genome-linked protein precursor) (Protein ORF1)
RDRP_PLRV1Protein P1-P2

2 entries

Potato virus Y (strain N) (PVY) reference strain

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MVP_PVYNP3N-PIPO polyprotein
POLG_PVYNGenome polyprotein

2 entries

Saccharomyces cerevisiae virus L-A (ScV-L-A) (ScVL1) reference strain

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GAG_SCVLAMajor capsid protein (Gag protein) (Major coat protein)
RDRP_SCVLAProbable RNA-directed RNA polymerase (EC 2.7.7.48) (Gag-Pol protein)

2 entries

Semliki forest virus (SFV) reference strain


POLS_SFVStructural polyprotein (p130)

2 entries

Simian immunodeficiency virus (isolate EK505) (SIV-cpz) (Chimpanzee immunodeficiency virus) reference strain

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GAG_SIVEKGag polyprotein (Pr55Gag)
POL_SIVEKGag-Pol polyprotein (Pr160Gag-Pol)

2 entries

Simian immunodeficiency virus (isolate MB66) (SIV-cpz) (Chimpanzee immunodeficiency virus) reference strain

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GAG_SIVMBGag polyprotein (Pr55Gag)
POL_SIVMBGag-Pol polyprotein (Pr160Gag-Pol)

2 entries

Simian immunodeficiency virus (isolate TAN1) (SIV-cpz) (Chimpanzee immunodeficiency virus) reference strain

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GAG_SIVTNGag polyprotein (Pr55Gag)
POL_SIVTNGag-Pol polyprotein (Pr160Gag-Pol)

2 entries

Southern bean mosaic virus (isolate Bean/United States/Arkansas) (SBMV) reference strain

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P2A_SBMVAPolyprotein P2A
RDRP_SBMVAReplicase polyprotein P2AB

2 entries

Southern cowpea mosaic virus (SCPMV) (Southern bean mosaic virus (strain cowpea)) reference strain

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P2A_SCPMVPolyprotein P2A
RDRP_SCPMVReplicase polyprotein P2AB

2 entries

Turkey astrovirus 1 (TAstV-1) reference strain

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NS1AB_TASV1Non-structural polyprotein 1AB
NS1A_TASV1Non-structural polyprotein 1A

2 entries

Turnip yellows virus (isolate FL-1) (TuYV) (BWYV-FL1) reference strain

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P1_TYYVFProtein P1 (66.2 kDa protein) (Genome-linked protein precursor) (Protein ORF1)
RDRP_TYYVFProtein P1-P2

2 entries

White bream virus (isolate Blicca bjoerkna L./Germany/DF24/00) (WBV) reference strain

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R1AB_WBV24Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)
R1A_WBV24Replicase polyprotein 1a (pp1a) (ORF1a polyprotein)

1 entry

Bacillus phage SPP1 (Bacteriophage SPP1) reference strain


TUBE_BPSPPTail tube protein gp17.1* (TTP) (Gene product 17.1) (gp17.1) (Major tail ...

1 entry

Barley yellow dwarf virus (isolate PAV) (BYDV) reference strain


RDRP_BYDVPPutative RNA-directed RNA polymerase (EC 2.7.7.48)

1 entry

Beet necrotic yellow vein virus (isolate Japan/S) (BNYVV) reference strain


CAPSD_BNYVSCapsid readthrough protein (CP-RT)

1 entry

Beet yellows virus (isolate Ukraine) (BYV) (Sugar beet yellows virus) reference strain


R1AB_BYVUReplicase polyprotein 1ab

1 entry

Carnation ringspot virus (isolate Lommel) (CRSV) reference strain


RDRP_CRSVLRNA-directed RNA polymerase (EC 2.7.7.48) (Protein p88)

1 entry

Equine arteritis virus (strain Bucyrus) (EAV) reference strain


RPOA_EAVBUReplicase polyprotein 1ab (ORF1ab polyprotein)

1 entry

Feline coronavirus (strain FIPV WSU-79/1146) (FCoV) reference strain


R1AB_FIPVReplicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)

1 entry

Groundnut rosette virus (strain MC1) (GRV) reference strain


RDRP_GRVMCRNA-directed RNA polymerase (RdRp) (EC 2.7.7.48)

1 entry

Red clover necrotic mosaic virus (RCNMV) reference strain


RDRP_RCNMVRNA-directed RNA polymerase (EC 2.7.7.48) (Protein p88)

3 entries

Human T-cell leukemia virus 1 (isolate Melanesia mel5 subtype C) (HTLV-1)

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GAG_HTL1LGag polyprotein (Pr53Gag)
POL_HTL1LGag-Pro-Pol polyprotein (Pr160Gag-Pro-Pol)
PRO_HTL1LGag-Pro polyprotein (Pr76Gag-Pro)

3 entries

Human T-cell leukemia virus 1 (strain Japan ATK-1 subtype A) (HTLV-1)

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GAG_HTL1AGag polyprotein (Pr53Gag)
POL_HTL1AGag-Pro-Pol polyprotein (Pr160Gag-Pro-Pol)
PRO_HTL1AGag-Pro polyprotein (Pr76Gag-Pro)

3 entries

Human T-cell leukemia virus 3 (strain Pyl43) (HTLV-3)

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GAG_HTL3PGag polyprotein (Pr53Gag)
POL_HTL3PGag-Pro-Pol polyprotein (Pr160Gag-Pro-Pol)
PRO_HTL3PGag-Pro polyprotein (Pr76Gag-Pro)

2 entries

Avian infectious bronchitis virus (strain Beaudette CK) (IBV)

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R1AB_IBVBCReplicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)
R1A_IBVBCReplicase polyprotein 1a (pp1a) (ORF1a polyprotein)

2 entries

Avian infectious bronchitis virus (strain M41) (IBV)

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R1AB_IBVMReplicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)
R1A_IBVMReplicase polyprotein 1a (pp1a) (ORF1a polyprotein)

2 entries

Avian nephritis virus 1 (ANV-1)

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NS1AB_ANV1Non-structural polyprotein 1AB
NS1A_ANV1Non-structural polyprotein 1A

2 entries

Bat coronavirus 133/2005 (BtCoV) (BtCoV/133/2005)

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R1AB_BC133Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)
R1A_BC133Replicase polyprotein 1a (pp1a) (ORF1a polyprotein)

2 entries

Bat coronavirus 279/2005 (BtCoV) (BtCoV/279/2005)

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R1AB_BC279Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)
R1A_BC279Replicase polyprotein 1a (pp1a) (ORF1a polyprotein)

2 entries

Bat coronavirus 512/2005 (BtCoV) (BtCoV/512/2005)

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R1AB_BC512Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)
R1A_BC512Replicase polyprotein 1a (pp1a) (ORF1a polyprotein)

2 entries

Bat coronavirus Rp3/2004 (BtCoV/Rp3/2004) (SARS-like coronavirus Rp3)

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R1AB_BCRP3Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)
R1A_BCRP3Replicase polyprotein 1a (pp1a) (ORF1a polyprotein)

2 entries

Bean common mosaic necrosis virus (strain NL-3) (BCMNV) (Bean common mosaic virus serotype A (strain NL-3))

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MVP_BCMNNP3N-PIPO polyprotein
POLG_BCMNNGenome polyprotein

2 entries

Bean yellow mosaic virus

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MVP_BYMVP3N-PIPO polyprotein
POLG_BYMVGenome polyprotein

2 entries

Beet mosaic virus (BtMV)

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MVP_BTMVP3N-PIPO polyprotein
POLG_BTMVGenome polyprotein

2 entries

Bovine coronavirus (strain 98TXSF-110-ENT) (BCoV-ENT) (BCV)

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R1AB_CVBENReplicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)
R1A_CVBENReplicase polyprotein 1a (pp1a) (ORF1a polyprotein)

2 entries

Bovine coronavirus (strain 98TXSF-110-LUN) (BCoV-LUN) (BCV)

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R1AB_CVBLUReplicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)
R1A_CVBLUReplicase polyprotein 1a (pp1a) (ORF1a polyprotein)

2 entries

Bovine coronavirus (strain Mebus) (BCoV) (BCV)

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R1AB_CVBMReplicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)
R1A_CVBMReplicase polyprotein 1a (pp1a) (ORF1a polyprotein)

2 entries

Bovine coronavirus (strain Quebec) (BCoV) (BCV)

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R1AB_CVBQReplicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)
R1A_CVBQReplicase polyprotein 1a (pp1a) (ORF1a polyprotein)

2 entries

Bovine immunodeficiency virus (strain R29) (BIV) (Bovine immunodeficiency-like virus)

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GAG_BIV29Gag polyprotein (Pr53Gag)
POL_BIV29Gag-Pol polyprotein (Pr170Gag-Pol)

2 entries

Encephalomyocarditis virus

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ALT2B_EMCVProtein 2B*
POLG_EMCVGenome polyprotein

2 entries

Hepatitis C virus genotype 1a (isolate 1) (HCV)

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F_HCV1F protein (Alternate reading frame protein/F-protein) (ARFP/F) (Frameshifted ...
POLG_HCV1Genome polyprotein

2 entries

Human astrovirus-4 (HAstV-4)

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NS1AB_HASV4Non-structural polyprotein 1AB
NS1A_HASV4Non-structural polyprotein 1A

2 entries

Human astrovirus-5 (HAstV-5)

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NS1AB_HASV5Non-structural polyprotein 1AB
NS1A_HASV5Non-structural polyprotein 1A

2 entries

Human astrovirus-8 (HAstV-8)

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NS1AB_HASV8Non-structural polyprotein 1AB
NS1A_HASV8Non-structural polyprotein 1A

2 entries

Human coronavirus EMC (isolate United Kingdom/H123990006/2012) (HCoV-EMC)

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R1AB_CVEMCReplicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)
R1A_CVEMCReplicase polyprotein 1a (pp1a) (ORF1a polyprotein)

2 entries

Human coronavirus HKU1 (isolate N2) (HCoV-HKU1)

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R1AB_CVHN2Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)
R1A_CVHN2Replicase polyprotein 1a (pp1a) (ORF1a polyprotein)

2 entries

Human coronavirus HKU1 (isolate N5) (HCoV-HKU1)

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R1AB_CVHN5Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)
R1A_CVHN5Replicase polyprotein 1a (pp1a) (ORF1a polyprotein)

2 entries

Human coronavirus OC43 (HCoV-OC43)

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R1AB_CVHOCReplicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)
R1A_CVHOCReplicase polyprotein 1a (pp1a) (ORF1a polyprotein)

2 entries

Human immunodeficiency virus type 1 group M subtype A (isolate U455) (HIV-1)

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GAG_HV1U4Gag polyprotein (Pr55Gag)
POL_HV1U4Gag-Pol polyprotein (Pr160Gag-Pol)

2 entries

Human immunodeficiency virus type 1 group M subtype B (isolate ARV2/SF2) (HIV-1)

2 entries

Human immunodeficiency virus type 1 group M subtype B (isolate BH5) (HIV-1)

2 entries

Human immunodeficiency virus type 1 group M subtype B (isolate JRCSF) (HIV-1)

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GAG_HV1JRGag polyprotein (Pr55Gag)
POL_HV1JRGag-Pol polyprotein (Pr160Gag-Pol)

2 entries

Human immunodeficiency virus type 1 group M subtype B (isolate LW123) (HIV-1)

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GAG_HV1LWGag polyprotein (Pr55Gag)
POL_HV1LWGag-Pol polyprotein (Pr160Gag-Pol)

2 entries

Human immunodeficiency virus type 1 group M subtype B (isolate MN) (HIV-1)

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GAG_HV1MNGag polyprotein (Pr55Gag)
POL_HV1MNGag-Pol polyprotein (Pr160Gag-Pol)

2 entries

Human immunodeficiency virus type 1 group M subtype B (isolate NY5) (HIV-1)

2 entries

Human immunodeficiency virus type 1 group M subtype B (isolate OYI) (HIV-1)

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GAG_HV1OYGag polyprotein (Pr55Gag)
POL_HV1OYGag-Pol polyprotein (Pr160Gag-Pol)

2 entries

Human immunodeficiency virus type 1 group M subtype B (isolate RF/HAT3) (HIV-1)

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GAG_HV1RHGag polyprotein (Pr55Gag)
POL_HV1RHGag-Pol polyprotein (Pr160Gag-Pol)

2 entries

Human immunodeficiency virus type 1 group M subtype B (isolate YU-2) (HIV-1)

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GAG_HV1Y2Gag polyprotein (Pr55Gag)
POL_HV1Y2Gag-Pol polyprotein (Pr160Gag-Pol)

2 entries

Human immunodeficiency virus type 1 group M subtype B (strain 89.6) (HIV-1)

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GAG_HV1B9Gag polyprotein (Pr55Gag)
POL_HV1B9Gag-Pol polyprotein (Pr160Gag-Pol)

2 entries

Human immunodeficiency virus type 1 group M subtype C (isolate 92BR025) (HIV-1)

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GAG_HV192Gag polyprotein (Pr55Gag)
POL_HV192Gag-Pol polyprotein (Pr160Gag-Pol)

2 entries

Human immunodeficiency virus type 1 group M subtype C (isolate ETH2220) (HIV-1)

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GAG_HV1ETGag polyprotein (Pr55Gag)
POL_HV1ETGag-Pol polyprotein (Pr160Gag-Pol)

2 entries

Human immunodeficiency virus type 1 group M subtype D (isolate ELI) (HIV-1)

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GAG_HV1ELGag polyprotein (Pr55Gag)
POL_HV1ELGag-Pol polyprotein (Pr160Gag-Pol)

2 entries

Human immunodeficiency virus type 1 group M subtype D (isolate NDK) (HIV-1)

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GAG_HV1NDGag polyprotein (Pr55Gag)
POL_HV1NDGag-Pol polyprotein (Pr160Gag-Pol)

2 entries

Human immunodeficiency virus type 1 group M subtype D (isolate Z2/CDC-Z34) (HIV-1)

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GAG_HV1Z2Gag polyprotein (Pr55Gag)
POL_HV1Z2Gag-Pol polyprotein (Pr160Gag-Pol)

2 entries

Human immunodeficiency virus type 1 group M subtype F2 (isolate MP255) (HIV-1)

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GAG_HV1MPGag polyprotein (Pr55Gag)
POL_HV1MPGag-Pol polyprotein (Pr160Gag-Pol)

2 entries

Human immunodeficiency virus type 1 group M subtype F2 (isolate MP257) (HIV-1)

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GAG_HV1M2Gag polyprotein (Pr55Gag)
POL_HV1M2Gag-Pol polyprotein (Pr160Gag-Pol)

2 entries

Human immunodeficiency virus type 1 group M subtype G (isolate 92NG083) (HIV-1)

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GAG_HV19NGag polyprotein (Pr55Gag)
POL_HV19NGag-Pol polyprotein (Pr160Gag-Pol)

2 entries

Human immunodeficiency virus type 1 group M subtype G (isolate SE6165) (HIV-1)

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GAG_HV1SEGag polyprotein (Pr55Gag)
POL_HV1SEGag-Pol polyprotein (Pr160Gag-Pol)

2 entries

Human immunodeficiency virus type 1 group M subtype H (isolate 90CF056) (HIV-1)

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GAG_HV190Gag polyprotein (Pr55Gag)
POL_HV190Gag-Pol polyprotein (Pr160Gag-Pol)

2 entries

Human immunodeficiency virus type 1 group M subtype H (isolate VI991) (HIV-1)

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GAG_HV1V9Gag polyprotein (Pr55Gag)
POL_HV1V9Gag-Pol polyprotein (Pr160Gag-Pol)

2 entries

Human immunodeficiency virus type 1 group M subtype J (isolate SE9173) (HIV-1)

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GAG_HV1S9Gag polyprotein (Pr55Gag)
POL_HV1S9Gag-Pol polyprotein (Pr160Gag-Pol)

2 entries

Human immunodeficiency virus type 1 group M subtype J (isolate SE9280) (HIV-1)

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GAG_HV1S2Gag polyprotein (Pr55Gag)
POL_HV1S2Gag-Pol polyprotein (Pr160Gag-Pol)

2 entries

Human immunodeficiency virus type 1 group M subtype K (isolate 96CM-MP535) (HIV-1)

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GAG_HV196Gag polyprotein (Pr55Gag)
POL_HV196Gag-Pol polyprotein (Pr160Gag-Pol)

2 entries

Human immunodeficiency virus type 1 group M subtype K (isolate 97ZR-EQTB11) (HIV-1)

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GAG_HV197Gag polyprotein (Pr55Gag)
POL_HV197Gag-Pol polyprotein (Pr160Gag-Pol)

2 entries

Human immunodeficiency virus type 1 group N (isolate YBF106) (HIV-1)

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GAG_HV1YBGag polyprotein (Pr55Gag)
POL_HV1YBGag-Pol polyprotein (Pr160Gag-Pol)

2 entries

Human immunodeficiency virus type 1 group N (isolate YBF30) (HIV-1)

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GAG_HV1YFGag polyprotein (Pr55Gag)
POL_HV1YFGag-Pol polyprotein (Pr160Gag-Pol)

2 entries

Human immunodeficiency virus type 2 subtype A (isolate CAM2) (HIV-2)

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GAG_HV2CAGag polyprotein (Pr55Gag)
POL_HV2CAGag-Pol polyprotein (Pr160Gag-Pol)

2 entries

Human immunodeficiency virus type 2 subtype A (isolate D194) (HIV-2)

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GAG_HV2D1Gag polyprotein (Pr55Gag)
POL_HV2D1Gag-Pol polyprotein (Pr160Gag-Pol)

2 entries

Human immunodeficiency virus type 2 subtype A (isolate Ghana-1) (HIV-2)

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GAG_HV2G1Gag polyprotein (Pr55Gag)
POL_HV2G1Gag-Pol polyprotein (Pr160Gag-Pol)

2 entries

Human immunodeficiency virus type 2 subtype A (isolate KR) (HIV-2)

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GAG_HV2KRGag polyprotein (Pr55Gag)
POL_HV2KRGag-Pol polyprotein (Pr160Gag-Pol)

2 entries

Human immunodeficiency virus type 2 subtype A (isolate NIH-Z) (HIV-2)

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GAG_HV2NZGag polyprotein (Pr55Gag)
POL_HV2NZGag-Pol polyprotein (Pr160Gag-Pol)

2 entries

Human immunodeficiency virus type 2 subtype A (isolate ROD) (HIV-2)

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GAG_HV2ROGag polyprotein (Pr55Gag)
POL_HV2ROGag-Pol polyprotein (Pr160Gag-Pol)

2 entries

Human immunodeficiency virus type 2 subtype A (isolate SBLISY) (HIV-2)

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GAG_HV2SBGag polyprotein (Pr55Gag)
POL_HV2SBGag-Pol polyprotein (Pr160Gag-Pol)

2 entries

Human immunodeficiency virus type 2 subtype A (isolate ST) (HIV-2)

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GAG_HV2STGag polyprotein (Pr55Gag)
POL_HV2STGag-Pol polyprotein (Pr160Gag-Pol)

2 entries

Human immunodeficiency virus type 2 subtype B (isolate D205) (HIV-2)

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GAG_HV2D2Gag polyprotein (Pr55Gag)
POL_HV2D2Gag-Pol polyprotein (Pr160Gag-Pol)

2 entries

Human immunodeficiency virus type 2 subtype B (isolate EHO) (HIV-2)

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GAG_HV2EHGag polyprotein (Pr55Gag)
POL_HV2EHGag-Pol polyprotein (Pr160Gag-Pol)

2 entries

Human immunodeficiency virus type 2 subtype B (isolate UC1) (HIV-2)

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GAG_HV2UCGag polyprotein (Pr55Gag)
POL_HV2UCGag-Pol polyprotein (Pr160Gag-Pol)

2 entries

Influenza A virus (strain A/Ann Arbor/6/1960 H2N2)

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PAX_I60A0Protein PA-X
PA_I60A0Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Beijing/39/1975 H3N2)

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PAX_I75A0Protein PA-X
PA_I75A0Polymerase acidic protein

2 entries

Influenza A virus (strain A/Brazil/11/1978 H1N1)

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PAX_I77AAProtein PA-X
PA_I77AAPolymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Brevig Mission/1/1918 H1N1) (Influenza A virus (strain A/South Carolina/1/1918 H1N1))

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PAX_I18A0Protein PA-X
PA_I18A0Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Chicken/Brescia/1902 H7N7)

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PAX_I02A0Protein PA-X
PA_I02A0Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Chicken/Hong Kong/220/1997 H5N1 genotype Gs/Gd)

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PAX_I97A0Protein PA-X
PA_I97A0Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Chicken/Hong Kong/31.2/2002 H5N1 genotype X1)

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PAX_I02A2Protein PA-X
PA_I02A2Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Chicken/Hong Kong/715.5/2001 H5N1 genotype E)

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PAX_I01A3Protein PA-X
PA_I01A3Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Chicken/Hong Kong/96.1/2002 H5N1 genotype Y)

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PAX_I02A5Protein PA-X
PA_I02A5Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Chicken/Hong Kong/YU22/2002 H5N1 genotype Z)

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PAX_I02A6Protein PA-X
PA_I02A6Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Chicken/Pennsylvania/1/1983 H5N2)

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PAX_I83A5Protein PA-X
PA_I83A5Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Chicken/Scotland/1959 H5N1)

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PAX_I59A0Protein PA-X
PA_I59A0Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Chicken/Victoria/1/1985 H7N7)

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PAX_I85A3Protein PA-X
PA_I85A3Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Chile/1/1983 H1N1)

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PAX_I83A1Protein PA-X
PA_I83A1Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/China:Nanchang/11/1996 H1N1)

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PAX_I96A3Protein PA-X
PA_I96A3Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Duck/Czechoslovakia/1956 H4N6)

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PAX_I56A1Protein PA-X
PA_I56A1Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Duck/England/1/1956 H11N6)

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PAX_I56A2Protein PA-X
PA_I56A2Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Duck/Hokkaido/8/1980 H3N8)

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PAX_I80A6Protein PA-X
PA_I80A6Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Duck/Hong Kong/2986.1/2000 H5N1 genotype C)

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PAX_I00A0Protein PA-X
PA_I00A0Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/England/878/1969 H3N2)

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PAX_I69A0Protein PA-X
PA_I69A0Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Equine/London/1416/1973 H7N7)

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PAX_I73A4Protein PA-X
PA_I73A4Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Equine/Tennessee/5/1986 H3N8)

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PAX_I86A3Protein PA-X
PA_I86A3Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Fort Monmouth/1/1947 H1N1)

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PAX_I47A0Protein PA-X
PA_I47A0Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Fowl plague virus/Rostock/8/1934 H7N1)

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PAX_I34A0Protein PA-X
PA_I34A0Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Goose/Guangxi/345/2005 H5N1 genotype G)

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PAX_I05A1Protein PA-X
PA_I05A1Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Grey teal/Australia/2/1979 H4N4)

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PAX_I79A7Protein PA-X
PA_I79A7Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Guinea fowl/Hong Kong/38/2002 H5N1 genotype X0)

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PAX_I02A1Protein PA-X
PA_I02A1Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Gull/Maryland/704/1977 H13N6)

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PAX_I77AFProtein PA-X
PA_I77AFPolymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Gull/Minnesota/945/1980 H13N6)

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PAX_I80ADProtein PA-X
PA_I80ADPolymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Henry/1936 H1N1)

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PAX_I36A0Protein PA-X
PA_I36A0Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Hickox/1940 H1N1)

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PAX_I40A0Protein PA-X
PA_I40A0Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Hong Kong/1/1968 H3N2)

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PAX_I68A4Protein PA-X
PA_I68A4Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Hong Kong/156/1997 H5N1 genotype Gs/Gd)

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PAX_I97A1Protein PA-X
PA_I97A1Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Hong Kong/5/1983 H3N2)

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PAX_I83A8Protein PA-X
PA_I83A8Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/India/6263/1980 H1N1)

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PAX_I80AAProtein PA-X
PA_I80AAPolymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Japan/305/1957 H2N2)

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PAX_I57A0Protein PA-X
PA_I57A0Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Kitakyushu/159/1993 H3N2)

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PAX_I93A0Protein PA-X
PA_I93A0Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Korea/426/1968 H2N2)

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PAX_I68A5Protein PA-X
PA_I68A5Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Leningrad/134/17/1957 H2N2)

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PAX_I57A2Protein PA-X
PA_I57A2Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Leningrad/134/1957 H2N2)

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PAX_I57A1Protein PA-X
PA_I57A1Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Leningrad/134/47/1957 H2N2)

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PAX_I57A3Protein PA-X
PA_I57A3Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Malaysia:Malaya/302/1954 H1N1)

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PAX_I54A2Protein PA-X
PA_I54A2Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Mallard/New York/6750/1978 H2N2)

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PAX_I78A3Protein PA-X
PA_I78A3Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Memphis/1/1971 H3N2)

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PAX_I71A1Protein PA-X
PA_I71A1Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Memphis/101/1972 H3N2)

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PAX_I72A4Protein PA-X
PA_I72A4Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Memphis/102/1972 H3N2)

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PAX_I72A3Protein PA-X
PA_I72A3Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Memphis/110/1976 H3N2)

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PAX_I76A6Protein PA-X
PA_I76A6Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Memphis/18/1978 H3N2)

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PAX_I78A8Protein PA-X
PA_I78A8Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Memphis/2/1978 H3N2)

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PAX_I78A7Protein PA-X
PA_I78A7Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Memphis/4/1980 H3N2)

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PAX_I80A4Protein PA-X
PA_I80A4Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/New Zealand:South Canterbury/35/2000 H1N1)

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PAX_I00A1Protein PA-X
PA_I00A1Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Northern Territory/60/1968 H3N2) (Influenza A virus (strain NT60)) (Influenza A virus (strain A/NT/60/1968 H3N2))

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PAX_I68A6Protein PA-X
PA_I68A6Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Pintail/Alberta/119/1979 H4N6)

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PAX_I79A1Protein PA-X
PA_I79A1Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Port Chalmers/1/1973 H3N2)

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PAX_I73A5Protein PA-X
PA_I73A5Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Qu/7/1970 H3N2)

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PAX_I70A0Protein PA-X
PA_I70A0Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Ruddy Turnstone/New Jersey/47/1985 H4N6)

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PAX_I85A7Protein PA-X
PA_I85A7Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Russia:St.Petersburg/8/2006 H1N1)

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PAX_I06A0Protein PA-X
PA_I06A0Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Silky Chicken/Hong Kong/SF189/2001 H5N1 genotype A)

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PAX_I01A0Protein PA-X
PA_I01A0Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Silky Chicken/Hong Kong/YU100/2002 H5N1 genotype X3)

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PAX_I02A4Protein PA-X
PA_I02A4Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Singapore/1/1957 H2N2)

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PAX_I57A5Protein PA-X
PA_I57A5Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Swine/Colorado/1/1977 H3N2)

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PAX_I77A4Protein PA-X
PA_I77A4Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Swine/Hong Kong/126/1982 H3N2)

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PAX_I82A4Protein PA-X
PA_I82A4Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Swine/Hong Kong/81/1978 H3N2)

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PAX_I78A9Protein PA-X
PA_I78A9Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Swine/Iowa/15/1930 H1N1)

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PAX_I30A0Protein PA-X
PA_I30A0Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Swine/Tennessee/26/1977 H1N1)

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PAX_I77ADProtein PA-X
PA_I77ADPolymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Swine/Wisconsin/1/1961 H1N1)

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PAX_I61A1Protein PA-X
PA_I61A1Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Swine/Wisconsin/1/1967 H1N1)

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PAX_I67A2Protein PA-X
PA_I67A2Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Tokyo/3/1967 H2N2)

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PAX_I67A0Protein PA-X
PA_I67A0Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Turkey/Ireland/1378/1983 H5N8)

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PAX_I83A4Protein PA-X
PA_I83A4Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Turkey/Minnesota/501/1978 H6N8)

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PAX_I78ACProtein PA-X
PA_I78ACPolymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Turkey/Ontario/6118/1968 H8N4)

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PAX_I68A3Protein PA-X
PA_I68A3Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Turkey/Wisconsin/1/1966 H9N2)

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PAX_I66A1Protein PA-X
PA_I66A1Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/USA:Albany/12/1951 H1N1)

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PAX_I51A0Protein PA-X
PA_I51A0Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/USA:Huston/AA/1945 H1N1)

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PAX_I45A0Protein PA-X
PA_I45A0Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/USA:Iowa/1943 H1N1)

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PAX_I43A0Protein PA-X
PA_I43A0Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/USA:Memphis/10/1996 H1N1)

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PAX_I96A2Protein PA-X
PA_I96A2Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/USA:Phila/1935 H1N1)

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PAX_I35A3Protein PA-X
PA_I35A3Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/USA:Texas/UR06-0195/2007 H1N1)

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PAX_I07A0Protein PA-X
PA_I07A0Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/USSR/90/1977 H1N1)

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PAX_I77ABProtein PA-X
PA_I77ABPolymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Udorn/307/1972 H3N2)

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PAX_I72A2Protein PA-X
PA_I72A2Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/Wilson-Smith/1933 H1N1) (Influenza A virus (strain A/WS/1933 H1N1))

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PAX_I33A0Protein PA-X
PA_I33A0Polymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Influenza A virus (strain A/X-31 H3N2)

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PAX_I000XProtein PA-X
PA_I000XPolymerase acidic protein (RNA-directed RNA polymerase subunit P2)

2 entries

Jembrana disease virus (JDV)

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GAG_JEMBRGag polyprotein (Pr53Gag)
POL_JEMBRGag-Pol polyprotein (Pr170Gag-Pol)

2 entries

Lettuce mosaic virus (strain 0 / isolate French) (LMV)

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MVP_LMV0P3N-PIPO polyprotein
POLG_LMV0Genome polyprotein

2 entries

Lettuce mosaic virus (strain E) (LMV)

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MVP_LMVEP3N-PIPO polyprotein
POLG_LMVEGenome polyprotein

2 entries

Mengo encephalomyocarditis virus

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ALT2B_ENMGOProtein 2B*
POLG_ENMGOGenome polyprotein

2 entries

Mink astrovirus 1 (MAstV-1)

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NS1AB_MASV1Non-structural polyprotein 1AB
NS1A_MASV1Non-structural polyprotein 1A

2 entries

Murine coronavirus (strain JHM) (MHV-JHM) (Murine hepatitis virus)

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R1AB_CVMJHReplicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)
R1A_CVMJHReplicase polyprotein 1a (pp1a) (ORF1a polyprotein)

2 entries

Ovine astrovirus 1 (OAstV-1)

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NS1AB_OASV1Non-structural polyprotein 1AB
NS1A_OASV1Non-structural polyprotein 1A

2 entries

Papaya ringspot virus (strain P / mutant HA)

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MVP_PRSVHP3N-PIPO polyprotein
POLG_PRSVHGenome polyprotein

2 entries

Pea seed-borne mosaic virus (strain DPD1)

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MVP_PSBMVP3N-PIPO polyprotein
POLG_PSBMVGenome polyprotein

2 entries

Peanut mottle virus (strain M)

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MVP_PEMVMP3N-PIPO polyprotein
POLG_PEMVMGenome polyprotein

2 entries

Pepper mottle virus (isolate California) (PeMV) (PepMoV C)

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MVP_PEMVCP3N-PIPO polyprotein
POLG_PEMVCGenome polyprotein

2 entries

Plum pox potyvirus (isolate NAT) (PPV)

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MVP_PPVNAP3N-PIPO polyprotein
POLG_PPVNAGenome polyprotein

2 entries

Plum pox potyvirus (strain D) (PPV)

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MVP_PPVDP3N-PIPO polyprotein
POLG_PPVDGenome polyprotein

2 entries

Plum pox potyvirus (strain SK 68) (PPV)

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MVP_PPVSKP3N-PIPO polyprotein
POLG_PPVSKGenome polyprotein

2 entries

Porcine reproductive and respiratory syndrome virus (isolate Pig/United States/SD 01-08/2001) (PRRSV)

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1ATF_PRRSSTruncated polyprotein 1aTF
RPOA_PRRSSReplicase polyprotein 1ab (ORF1ab polyprotein)

2 entries

Potato leafroll virus (strain Potato/Netherlands/Wageningen/1989) (PLrV)

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P1_PLRVWProtein P1 (69.7 kDa protein) (Genome-linked protein precursor) (Protein ORF1)
RDRP_PLRVWProtein P1-P2

2 entries

Potato virus A (PVA)

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MVP_PVMAP3N-PIPO polyprotein
POLG_PVMAGenome polyprotein

2 entries

Potato virus Y (strain Hungarian) (PVY)

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MVP_PVYHUP3N-PIPO polyprotein
POLG_PVYHUGenome polyprotein

2 entries

Rous sarcoma virus (strain Prague C) (RSV-PrC)

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GAG_RSVPGag-Pro polyprotein
POL_RSVPGag-Pro-Pol polyprotein

2 entries

Rous sarcoma virus (strain Schmidt-Ruppin B) (RSV-SRB)

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GAG_RSVSBGag-Pro polyprotein
POL_RSVSBGag-Pro-Pol polyprotein

2 entries

Saccharomyces cerevisiae virus L-BC (ScV-L-BC) (ScVLa)

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GAG_SCVLBMajor capsid protein (Gag protein) (Major coat protein)
RDRP_SCVLBProbable RNA-directed RNA polymerase (EC 2.7.7.48) (Gag-Pol protein)

2 entries

Semliki forest virus (SFV)


POLSF_SFVFrameshifted structural polyprotein (p130)

2 entries

Simian immunodeficiency virus (isolate CPZ GAB1) (SIV-cpz) (Chimpanzee immunodeficiency virus)

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GAG_SIVCZGag polyprotein (Pr55Gag)
POL_SIVCZGag-Pol polyprotein (Pr160Gag-Pol)

2 entries

Simian immunodeficiency virus (isolate F236/smH4) (SIV-sm) (Simian immunodeficiency virus sooty mangabey monkey)

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GAG_SIVS4Gag polyprotein (Pr55Gag)
POL_SIVS4Gag-Pol polyprotein (Pr160Gag-Pol)

2 entries

Simian immunodeficiency virus (isolate GB1) (SIV-mnd) (Simian immunodeficiency virus mandrill)

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GAG_SIVGBGag polyprotein (Pr55Gag)
POL_SIVGBGag-Pol polyprotein (Pr160Gag-Pol)

2 entries

Simian immunodeficiency virus (isolate K6W) (SIV-mac) (Simian immunodeficiency virus rhesus monkey)

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GAG_SIVMKGag polyprotein (Pr55Gag)
POL_SIVMKGag-Pol polyprotein (Pr160Gag-Pol)

2 entries

Simian immunodeficiency virus (isolate Mm142-83) (SIV-mac) (Simian immunodeficiency virus rhesus monkey)

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GAG_SIVM1Gag polyprotein (Pr55Gag)
POL_SIVM1Gag-Pol polyprotein (Pr160Gag-Pol)

2 entries

Simian immunodeficiency virus (isolate PBj14/BCL-3) (SIV-sm) (Simian immunodeficiency virus sooty mangabey monkey)

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GAG_SIVSPGag polyprotein (Pr55Gag)
POL_SIVSPGag-Pol polyprotein (Pr160Gag-Pol)

2 entries

Simian immunodeficiency virus agm.grivet (isolate AGM gr-1) (SIV-agm.gri) (Simian immunodeficiency virus African green monkey grivet)

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GAG_SIVG1Gag polyprotein (Pr55Gag)
POL_SIVG1Gag-Pol polyprotein (Pr160Gag-Pol)

2 entries

Simian immunodeficiency virus agm.vervet (isolate AGM TYO-1) (SIV-agm.ver) (Simian immunodeficiency virus African green monkey vervet)

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GAG_SIVVTGag polyprotein (Pr55Gag)
POL_SIVVTGag-Pol polyprotein (Pr160Gag-Pol)

2 entries

Simian immunodeficiency virus agm.vervet (isolate AGM155) (SIV-agm.ver) (Simian immunodeficiency virus African green monkey vervet)

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GAG_SIVV1Gag polyprotein (Pr55Gag)
POL_SIVV1Gag-Pol polyprotein (Pr160Gag-Pol)

2 entries

Simian immunodeficiency virus agm.vervet (isolate AGM3) (SIV-agm.ver) (Simian immunodeficiency virus African green monkey vervet)

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GAG_SIVVGGag polyprotein (Pr55Gag)
POL_SIVVGGag-Pol polyprotein (Pr160Gag-Pol)

2 entries

Soybean mosaic virus (strain G2) (SMV)

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MVP_SBMVGP3N-PIPO polyprotein
POLG_SBMVGGenome polyprotein

2 entries

Soybean mosaic virus (strain N) (SMV)

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MVP_SBMVNP3N-PIPO polyprotein
POLG_SBMVNGenome polyprotein

2 entries

Tobacco etch virus (TEV)

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MVP_TEVP3N-PIPO polyprotein
POLG_TEVGenome polyprotein

2 entries

Tobacco vein mottling virus (TVMV)

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MVP_TVMVP3N-PIPO polyprotein
POLG_TVMVGenome polyprotein

2 entries

Turkey astrovirus 2 (TAstV-2)

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NS1AB_TASV2Non-structural polyprotein 1AB
NS1A_TASV2Non-structural polyprotein 1A

2 entries

Turnip mosaic virus (strain Japanese) (TuMV)

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MVP_TUMVJP3N-PIPO polyprotein
POLG_TUMVJGenome polyprotein

2 entries

Turnip mosaic virus (strain Quebec) (TuMV)

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MVP_TUMVQP3N-PIPO polyprotein
POLG_TUMVQGenome polyprotein

2 entries

Zucchini yellow mosaic virus (strain California) (ZYMV)

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MVP_ZYMVCP3N-PIPO polyprotein
POLG_ZYMVCGenome polyprotein

2 entries

Zucchini yellow mosaic virus (strain Reunion Island) (ZYMV)

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MVP_ZYMVRP3N-PIPO polyprotein
POLG_ZYMVRGenome polyprotein

2 entries

Zucchini yellow mosaic virus (strain Singapore) (ZYMV)

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MVP_ZYMVSP3N-PIPO polyprotein
POLG_ZYMVSGenome polyprotein

1 entry

Barley yellow dwarf virus (isolate MAV-PS1) (BYDV)


RDRP_BYDV1Putative RNA-directed RNA polymerase (EC 2.7.7.48)

1 entry

Barley yellow dwarf virus (isolate P-PAV) (BYDV)


RDRP_BYDVRPutative RNA-directed RNA polymerase (EC 2.7.7.48)

1 entry

Human T-cell leukemia virus 1 (strain Japan MT-2 subtype A) (HTLV-1)


GAG_HTL1MGag polyprotein (Pr53Gag)

1 entry

Human immunodeficiency virus type 1 group M subtype B (isolate CDC-451) (HIV-1)


GAG_HV1C4Gag polyprotein (Pr55Gag)

1 entry

Human immunodeficiency virus type 1 group M subtype B (isolate JH32) (HIV-1)


GAG_HV1J3Gag polyprotein (Pr55Gag)

1 entry

Lactate dehydrogenase elevating virus (strain C) (LDV)


RPOA_LDVCReplicase polyprotein 1ab (ORF1ab polyprotein)

1 entry

Lactate dehydrogenase elevating virus (strain Plagemann) (LDV)


RPOA_LDVPReplicase polyprotein 1ab (ORF1ab polyprotein)

1 entry

Porcine reproductive and respiratory syndrome virus (strain 16244B) (PRRSV)


RPOA_PRRS1Replicase polyprotein 1ab (ORF1ab polyprotein)

1 entry

Porcine reproductive and respiratory syndrome virus (strain HB-1) (PRRSV)


RPOA_PRRSBReplicase polyprotein 1ab (ORF1ab polyprotein)

1 entry

Porcine reproductive and respiratory syndrome virus (strain VR-2332) (PRRSV)


RPOA_PRRSRReplicase polyprotein 1ab (ORF1ab polyprotein)

1 entry

Sheep pulmonary adenomatosis virus (Jaagsiekte sheep retrovirus) (JSRV)


VPRT_JSRVBifunctional protease/dUTPase

1 entry

Simian hemorrhagic fever virus (SHFV)


RPOA_SHFVReplicase polyprotein 1ab (ORF1ab polyprotein)

1 entry

Simian immunodeficiency virus (isolate STM) (SIV-mac) (Simian immunodeficiency virus rhesus monkey)


GAG_SIVMSGag polyprotein (Pr55Gag)