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Lentivirus (taxid:11646)

VIRION

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Enveloped, spherical to pleomorphic in shape, 80-100 nm in diameter. Mature capsid contains 1572 capsid proteins.

GENOME

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Monopartite, linear, dimeric, ssRNA(+) genome of 9,75 kb, with a 5'-cap and a 3'poly-A tail. There are two long terminal repeats (LTRs) of about 600nt long at the 5' and 3' ends. The LTRs contain the U3, R, and U5 regions. There are also a primer binding site (PBS) at the 5'end and a polypurine tract (PPT) at the 3'end.

GENE EXPRESSION

The integrated provirus utilizes the promotor elements in the 5'LTR to drive transcription. This gives rise to the unspliced full length mRNA that will serve as genomic RNA to be packaged into virions or used as a template for translation of gag and gag-(pro)pol (1 ribosomal frameshift) polyproteins. The uncompletely spliced mRNAs encode env that is cleaved into SU and TM envelope proteins, and the accessory proteins vif, vpu, and vpr. Completely spliced mRNAs encode Rev, Tat and Nef accessory proteins. Rev escorts unspliced and uncompletely spliced RNAs out of the nucleus of infected cells.

ENZYMES

REPLICATION

NUCLEAR

Lytic replication:

  1. Virus attaches to host receptors through the SU glycoprotein (gp120), with subsequent interaction with a chemokine coreceptor. TM glycoprotein (gp41) mediates fusion with cell membrane.
  2. Internalization and partial uncoating.
  3. ssRNA(+) genome is copied into a linear dsDNA molecule by the reverse transcriptase.
  4. Nuclear entry of the viral dsDNA which is covalently and randomly integrated into the cell's genome by the viral integrase (=provirus).
  5. Transcription of provirus by Pol II produces viral spliced and unspliced RNAs.
  6. Translation of spliced viral RNAs produces tat, rev, and nef proteins.
  7. Rev mediates nuclear export of the uncompletely spliced RNAs.
  8. Translation of unspliced viral RNAs produces Env, Gag and Gag-Pol polyproteins.
  9. Assembly of the virion at the host cellular membrane and packaging of the viral RNA genome.
  10. Budding through the plasma membrane and release of the virions.
  11. Proteolytic processing of the precursors polyproteins by viral protease and maturation of the virions.

Latent replication : replication as a provirus integrated in the host chromosome.

DB LINKS image image

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HIV sequences: Los Alamos
HIV drug resistance: Stanford

TAXONOMY Group VI: RNA reverse transcribing viruses
Realm: Riboviria
Kingdom: Pararnavirae
Phylum: Artverviricota
Class: Revtraviricetes
Order: Ortervirales
Family: Retroviridae
Subfamily: Orthoretrovirinae
Genus: Lentivirus
VIRUS
Human immunodeficiency virus 1
 Bovine immunodeficiency virus
 Caprine arthritis encephalitis virus
 Equine infectious anemia virus
 Feline immunodeficiency virus
 Human immunodeficiency virus 2
 Jembrana disease virus
 Puma lentivirus
 Simian immunodeficiency virus
 Visna-maedi virus
REFERENCE STRAINS Human immunodeficiency virus 1
Sequence | Genome assembly | Proteome
Human immunodeficiency virus 2
Sequence | Genome assembly | Proteome

Host

HOST Vertebrate
CELL TROPISM CD4+ T cells, macrophages and dendritic cells.
CELL RECEPTOR (S) HIV: CD4 , CCR5, CXCR4, Glycosphingolipids (->SugarBindDB)
SIV: CD4
FIV: CXCR4

Ecology and disease

GEOGRAPHY worldwide
ASSOCIATED DISEASES Acquired ImmunoDeficiency Syndrome (AIDS)
TRANSMISSION Sexual contact, blood, breast feeding
VACCINE None
Vaccine trial database
ANTIVIRAL DRUGS Protease inhibitors (PIs): amprenavir, atazanavir, indinavir, loprinavir, nelfinavir, ritonavir and saquinavir.
Reverse transcriptase nucleoside inhibitors (NRTIs): atevirdine (BHAP U-87201E), delavirdine, efavirenz (DMP-266), emivirine (I-EBU), and nevirapine (BI-RG-587).
Reverse transcriptase non nucleoside inhibitors (NNRTIs): abacavir, adefovir (PMEA), didanosine (ddI), lamivudine (3TC), stavudine (d4T), tenofovir (PMPA), zalcitabine (ddC), and zidovudine (AZT).

Host-virus interaction

Adaptive immune response inhibition

Lentiviruses have evolved different strategies to inhibit the host adaptive immune response. HIV-1 TAT acts at the transcriptional level by modifying proteasome composition by upregulating the LMP7 and MECL1 subunits and downregulating the LMP2 subunit, thereby promoting presentation of cryptic and subdominant CTL epitopes.

Three other HIV-1 proteins, Nef, Env and Vpu, contribute to downregulate CD4. Env forms a complex with CD4 in the endoplasmic reticulum, and retains the receptor in this compartment. Nef and Vpu target the receptor for degradation in the lysosome and the proteasome, respectively.

Apoptosis modulation

Vpr plays a role in the "induction of apoptosis" in HIV-1 infected cells via destabilization of the mitochondrial membrane leading to cytochrome C release and activation of the host caspase 9/3 pathway.

Autophagy modulation

HIV-1 Tat suppressed the induction of autophagy-associated genes and inhibited the formation of autophagosomes process ,.

Cell-cycle modulation

The Vpr protein form HIV-1 and HIV-2 induces a cell cycle arrest at G2/M transition through inactivation of the host cyclinB/cdc2 complex .

Innate immune response inhibition

Tat can inhibit PKR activity by both RNA-dependent and RNA-independent mechanisms .

GENERAL Back to herpesviridae page
NATURAL HOSTS Vertebrates
CELL TROPISM
INTERACTIONS Cell receptors HHV-1 and HHV-2: heparan sulfate,TNFRSF14 PVRL1
HHV-2: PVRL2
BoHV: heparan sulfate, CD155 PVRL1
SuHV-1: heparan sulfate, CD155 PVRL1 PVRL2
HHV-7: CD4
HHV-8: Integrin alphaV -beta3
HHV-4: CR2 BMRF2
HHV-5: heparan sulfate
ASSOCIATED DISEASES Acquired ImmunoDeficiency Syndrome (AIDS)
TRANSMISSION Sexual contact, blood, breast feeding

Matching UniProtKB/Swiss-Prot entries

(all links/actions below point to uniprot.org website)

679 entries grouped by strain

9 entries

Human immunodeficiency virus type 1 group M subtype A (isolate MAL) (HIV-1) reference strain

Select_allDeselect_all
ENV_HV1MA Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...

pdb 2X4O

POL_HV1MA Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...

pdb 1HHJ; 3IXO; 8T4E

GAG_HV1MA Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...
NEF_HV1MA Protein Nef (3'ORF) (Negative factor) (F-protein) [Cleaved into: C-terminal core protein]

pdb 3W0W; 3WL9

TAT_HV1MA Protein Tat (Transactivating regulatory protein)

pdb 1K5K

VIF_HV1MA Virion infectivity factor (Vif) (SOR protein) [Cleaved into: p17; p7]
VPU_HV1MA Protein Vpu (U ORF protein) (Viral protein U)
VPR_HV1MA Protein Vpr (R ORF protein) (Viral protein R)
REV_HV1MA Protein Rev (ART/TRS) (Anti-repression transactivator) (Regulator of expression of viral proteins)

9 entries

Human immunodeficiency virus type 1 group M subtype B (isolate ARV2/SF2) (HIV-1) reference strain

Select_allDeselect_all
GAG_HV1A2 Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...

pdb 4OBD; 4OBF; 4OBG; 4OBH; 4OBJ; 4OBK; 4QJ2; 4QJ6; 4QJ7; 4QJ8; 4QJ9; 4QJA

POL_HV1A2 Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...

pdb 1AID; 1B6J; 1B6K; 1B6L; 1B6M; 1B6P; 1CPI; 1D4K; 1D4L; 1F7A; 1KJ4; 1KJ7; 1KJF; 1KJG; 1KJH; 1KZK; 1MT7; 1MT8; 1MT9; 1MTB; 1MTR; 1N49; 1T3R; 1TSQ; 1TSU; 1YTG; 1YTH; 1Z1H; 1Z1R; 2AID; 2F3K; 2FGU; 2FGV; 2FNS; 2FNT; 2J9J; 2J9K; 2JE4; 2NXD; 2NXL; 2NXM; 2Q3K; 2QHY; 2QHZ; 2QI0; 2QI1; 2QI3; 2QI4; 2QI5; 2QI6; 2QI7; 3AID; 3BXR; 3BXS; 3EKP; 3EKQ; 3EKT; 3EKV; 3EKW; 3EKX; 3EKY; 3EL0; 3EL1; 3EL4; 3EL5; 3EL9; 3EM3; 3EM4; 3EM6; 3FSM; 3GI0; 3GI4; 3GI5; 3GI6; 3HAU; 3HAW; 3HBO; 3HDK; 3HLO; 3HVP; 3HZC; 3I2L; 3I7E; 3IAW; 3KA2; 3LZV; 3MXD; 3MXE; 3NWQ; 3NWX; 3NXN; 3NYG; 3O9F; 3O9G; 3O9H; 3O9I; 3OXV; 3OXW; 3OXX; 3OY4; 3R4B; 4EP2; 4EP3; 4EPJ; 4EQ0; 4EQJ; 4F73; 4F74; 4F75; 4F76; 4HVP; 4OBD; 4OBF; 4OBG; 4OBH; 4OBJ; 4OBK; 4QJ2; 4QJ6; 4QJ7; 4QJ8; 4QJ9; 4QJA; 7HVP; 8HVP

ENV_HV1A2 Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...

pdb 5DRZ

NEF_HV1A2 Protein Nef (3'ORF) (Negative factor) (F-protein) [Cleaved into: C-terminal core protein]

pdb 3RBB; 3REA; 3REB; 4ORZ; 4U1K; 4U1L; 4U1M; 4U1N; 4U5W; 5XOV; 6B72; 7D7S; 8F2P

TAT_HV1A2 Protein Tat (Transactivating regulatory protein)
VIF_HV1A2 Virion infectivity factor (Vif) (SOR protein) [Cleaved into: p17; p7]
REV_HV1A2 Protein Rev (ART/TRS) (Anti-repression transactivator) (Regulator of expression of viral proteins)
VPU_HV1A2 Protein Vpu (U ORF protein) (Viral protein U)
VPR_HV1A2 Protein Vpr (R ORF protein) (Viral protein R)

9 entries

Human immunodeficiency virus type 1 group M subtype B (isolate BRU/LAI) (HIV-1) reference strain

Select_allDeselect_all
GAG_HV1BR Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...
POL_HV1BR Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...

pdb 1A8G; 1A8K; 1A94; 1AAQ; 1D4S; 1D4Y; 1DAZ; 1DIF; 1FQX; 1HHP; 1HNI; 1HPO; 1HPX; 1HSG; 1HVL; 1IIQ; 1IZI; 1LZQ; 1M0B; 1MRW; 1MRX; 1MSM; 1MSN; 1NH0; 1RL8; 1SDT; 1SDU; 1SDV; 1SGU; 1SH9; 1SP5; 1U8G; 1UPJ; 1XL2; 1XL5; 1Z8C; 1ZBG; 1ZJ7; 1ZLF; 1ZPK; 1ZTZ; 2A1E; 2AZ8; 2AZ9; 2AZB; 2AZC; 2B7Z; 2BB9; 2FDE; 2HB2; 2HB4; 2HC0; 2HND; 2HNY; 2IEN; 2O4K; 2O4L; 2O4N; 2O4P; 2O4S; 2P3B; 2PK5; 2PK6; 2PQZ; 2PWC; 2PWR; 2PYM; 2PYN; 2Q63; 2Q64; 2QAK; 2QCI; 2QD6; 2QD7; 2QD8; 2QHC; 2QNN; 2QNP; 2QNQ; 2R43; 2UPJ; 2Z4O; 2ZGA; 2ZYE; 3A2O; 3BHE; 3BVA; 3BVB; 3CKT; 3DJK; 3DK1; 3FX5; 3GGU; 3H5B; 3I6O; 3I8W; 3JVW; 3JVY; 3JW2; 3KDB; 3KDC; 3KDD; 3NDU; 3NDW; 3NDX; 3NLS; 3PWM; 3PWR; 3QBF; 3QIH; 3QN8; 3QP0; 3QPJ; 3QRM; 3QRO; 3QRS; 3ST5; 3T11; 3T3C; 3TOF; 3TOG; 3TOH; 3TTP; 3U7S; 3UCB; 3UF3; 3UFN; 3UHL; 3VF5; 3VF7; 3VFB; 4DFG; 4FAF; 4FE6; 4FL8; 4FLG; 4FM6; 4GB2; 4HDB; 4HDF; 4HDP; 4HE9; 4HEG; 4HLA; 4J54; 4J55; 4J5J; 4JEC; 4LL3; 5E5K; 5YOK; 6BSH; 6P9A; 6P9B; 6UWB; 6UWC; 6VCE; 6VLM; 6VOD; 6VOE; 7DZM; 7DZN; 7M9G; 7M9H; 7M9I; 7M9J; 7M9K; 7M9L; 7M9M; 7M9N; 7M9O; 7M9P; 7M9Q; 7M9R; 7M9S; 7M9T; 7M9U; 7M9V; 7M9W; 7M9X; 7M9Z; 7MA0; 7MA1; 7MA2; 7MA3; 7MA4; 7MA5; 7MA6; 7MA7; 7MA8; 7MA9; 7MAA; 7MAB; 7MAC; 7MAD; 7MAE; 7MAF; 7MAG; 7MAH; 7MAI; 7MAJ; 7MAK; 7MAL; 7MAN; 7MAO; 7MAP; 7MAQ; 7MAR; 7MAS; 7N6T; 7N6V; 7N6X; 7TO5; 7TO6; 7UPJ; 8DCH; 8DCI; 8FUI; 8FUJ; 8VB1

ENV_HV1BR Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...

pdb 1ENV; 1ERF; 1FAV; 1JD8; 1P5A; 1U6U; 1U6V; 2ZZO; 3G9R; 3MNW; 3VGX; 3VTP; 5WES; 5WET; 5WEU; 6R2G

NEF_HV1BR Protein Nef (3'ORF) (Negative factor) (F-protein) [Cleaved into: C-terminal core protein]

pdb 1AVV; 1AVZ; 1EFN; 4D8D; 6URI

TAT_HV1BR Protein Tat (Transactivating regulatory protein)

pdb 1JFW; 1JM4

VPU_HV1BR Protein Vpu (U ORF protein) (Viral protein U)
VPR_HV1BR Protein Vpr (R ORF protein) (Viral protein R)
REV_HV1BR Protein Rev (ART/TRS) (Anti-repression transactivator) (Regulator of expression of viral proteins)
VIF_HV1BR Virion infectivity factor (Vif) (SOR protein) [Cleaved into: p17; p7]

9 entries

Human immunodeficiency virus type 1 group M subtype B (isolate HXB2) (HIV-1) reference strain

Select_allDeselect_all
ENV_HV1H2 Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...

pdb 1AIK; 1DF4; 1DF5; 1DLB; 1FAV; 1G9M; 1GC1; 1GZL; 1K33; 1K34; 1MZI; 1RZJ; 2CMR; 2ME1; 2MG1; 2MG2; 2MG3; 2NY7; 2PV6; 2XRA; 3D0V; 3DNL; 3DNN; 3DNO; 3DRO; 3IDX; 3IDY; 3J70; 3MNZ; 3TYG; 3VIE; 4JPJ; 4JPK; 4YDV; 4ZTO; 5BN0; 5C0R; 5C0S; 5CIL; 5CIN; 5CMU; 5CMZ; 5CN0; 5DD0; 5GHW; 5H0N; 5HFL; 5HM1; 5IVX; 5KA5; 5KA6; 5NVP; 5NWU; 5NWW; 5TKJ; 5TKK; 5WDF; 5X08; 5YB2; 5YB3; 5YB4; 5YC0; 5Z0W; 5ZCX; 6B9K; 6BXP; 6BXQ; 6DE7; 6DLN; 6J5E; 6JQK; 6KTS; 6MQC; 6MQE; 6MQM; 6MQR; 6MQS; 6N16; 6NCP; 6NPR; 6O3G; 6O3J; 6O3L; 6O42; 6P60; 6P7H; 6P8D; 6PDR; 6PDS; 6PDU; 6PEC; 6PEF; 6PSA; 6RYF; 6SNC; 6SND; 6SNE; 6UBI; 6UCE; 6UCF; 6UJU; 6UJV; 6WWC; 7AEJ; 7EKB; 7EKK; 7FF1; 7LOH; 7LOI; 7N05; 7N08; 7R73; 7R74; 7RDW; 8B6Y; 8F3A; 8F3B; 8FYM; 8FZ2; 8G8A; 8G8C; 8G8D; 8IPG; 8TQ7; 8TQ8; 8TQ9; 8W2Y; 8W32; 8W37; 9ARN; 9ARP

POL_HV1H2 Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...

pdb 1A30; 1BV7; 1BV9; 1BVE; 1BVG; 1BWA; 1BWB; 1C0T; 1C0U; 1C1B; 1C1C; 1DMP; 1DTQ; 1DTT; 1E6J; 1EP4; 1ESK; 1EX4; 1EXQ; 1FB7; 1FK9; 1FKO; 1FKP; 1G6L; 1HIV; 1HVH; 1HVR; 1HWR; 1HXB; 1JKH; 1JLA; 1JLB; 1JLC; 1JLE; 1JLF; 1JLG; 1JLQ; 1KLM; 1LV1; 1LW0; 1LW2; 1LWC; 1LWE; 1LWF; 1NCP; 1O1W; 1ODW; 1ODY; 1QBR; 1QBS; 1QBT; 1QBU; 1REV; 1RT1; 1RT2; 1RT3; 1RT4; 1RT5; 1RT6; 1RT7; 1RTD; 1RTH; 1RTI; 1RTJ; 1S1T; 1S1U; 1S1V; 1S1W; 1S1X; 1T05; 1TAM; 1TKT; 1TKX; 1TKZ; 1TL1; 1TL3; 1VRT; 1VRU; 2HND; 2HNY; 2HNZ; 2KOD; 2NPH; 2OPP; 2OPQ; 2OPR; 2OPS; 2RF2; 2RKI; 2WHH; 2WOM; 2WON; 2YNF; 2YNG; 2YNH; 2YNI; 3AO2; 3C6T; 3C6U; 3DI6; 3DLE; 3DLG; 3DM2; 3DMJ; 3DOK; 3DOL; 3DOX; 3DRP; 3DRR; 3DRS; 3DYA; 3E01; 3FFI; 3I0R; 3I0S; 3KJV; 3KK1; 3KK2; 3KK3; 3KT2; 3KT5; 3LAK; 3LAL; 3LAM; 3LAN; 3LP0; 3LP1; 3LP2; 3M8P; 3M8Q; 3MEC; 3MED; 3MEE; 3MEG; 3N3I; 3NBP; 3PHV; 3QIN; 3QIO; 3QIP; 3T19; 3T1A; 3TAM; 4B3O; 4B3P; 4B3Q; 4I7F; 4KSE; 4KV8; 4NCG; 4Q1W; 4Q1X; 4Q1Y; 4Q5M; 4QLH; 4U1H; 4U1I; 4U1J; 4U7Q; 4U7V; 5DGU; 5DGW; 5EU7; 5HRN; 5HRP; 5HRR; 5HRS; 5IM7; 5J2M; 5J2N; 5J2P; 5J2Q; 5K14; 5KAO; 5T82; 5TC2; 5VZ6; 5XOS; 5XOT; 5YRS; 6BJ2; 6BJ3; 6BSG; 6BSH; 6BSI; 6BSJ; 6DIF; 6DIL; 6DJ1; 6DJ2; 6DJ5; 6DJ7; 6DV0; 6DV4; 6E7J; 6E9A; 6EWA; 6EX9; 6GL1; 6J1V; 6J1W; 6OR7; 6OTZ; 6P1I; 6P1X; 6P2G; 6PYL; 6SKK; 6SKM; 6SKN; 6SLQ; 6SLU; 6SMU; 6UIR; 6UIS; 6UIT; 6UJX; 6UJY; 6UJZ; 6UK0; 6VPZ; 6VQ2; 6VQD; 6VQE; 6VQY; 6VQZ; 6WAZ; 6WB1; 6WPF; 6WPH; 6WPJ; 7DOZ; 7DPQ; 7DT9; 7R7V; 7R7X; 7R80; 7SLR; 7SLS; 7XIU; 7XJ4; 7XJ5; 7XJ7; 8ERX; 8ESX; 8ESY; 8F0F; 8F5A; 8F7M; 8FCC; 8FCD; 8FCE; 8JYH; 8JYI; 8JYJ; 8TCJ; 8TCK; 8TCL; 8TCM

GAG_HV1H2 Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...

pdb 1TSQ; 1TSU; 5FJB; 5I1R; 5INC; 5IND; 5NME; 5NMF; 5NMG; 5NMH; 5NMK; 6CPL; 6CPN; 6CPO; 6CQJ; 6CQL; 6CQN; 6CQQ; 6CQR; 6EC2; 6ECN; 6ECO; 6N3J; 6N3U; 6ZDJ; 7ASH; 7ASL; 7WJ2; 9CWV; 9D6C; 9DWD

NEF_HV1H2 Protein Nef (3'ORF) (Negative factor) (F-protein) [Cleaved into: C-terminal core protein]

pdb 3RL2; 4NEE; 4WU5; 4WU7; 5HGA; 5HGB; 5HGD; 5HGH; 7K80; 7K81; 7YG3; 8GVB; 8GVG; 8GVI; 9BL9; 9BLA

TAT_HV1H2 Protein Tat (Transactivating regulatory protein)

pdb 3MI9; 3MIA; 4OR5; 5V61; 6CYT; 6MCE; 6MCF

REV_HV1H2 Protein Rev (ART/TRS) (Anti-repression transactivator) (Regulator of expression of viral proteins)

pdb 6HIP; 7JYA

VPU_HV1H2 Protein Vpu (U ORF protein) (Viral protein U)

pdb 2N29

VIF_HV1H2 Virion infectivity factor (Vif) (SOR protein) [Cleaved into: p17; p7]

pdb 8CX0; 8CX1; 8CX2

VPR_HV1H2 Protein Vpr (R ORF protein) (Viral protein R)

pdb 4U1S

9 entries

Human immunodeficiency virus type 1 group M subtype B (isolate MN) (HIV-1) reference strain

Select_allDeselect_all
NEF_HV1MN Protein Nef (3'ORF) (Negative factor) (F-protein) [Cleaved into: C-terminal core protein]
ENV_HV1MN Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...

pdb 1ACY; 1AI1; 1F58; 1GGI; 1K5M; 1NAK; 1NIZ; 1NJ0; 1Q1J; 2B0S; 2QSC; 3E6H; 3GO1; 3MLW; 3MLX; 3UJI; 4M1D; 4XAW; 4XBE; 4XC1; 4XC3; 4XCF; 4XMK; 5KD4; 5KD7; 5T7G; 6DB6; 6DB7; 6MNS; 6SH9

GAG_HV1MN Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...

pdb 1AAF

TAT_HV1MN Protein Tat (Transactivating regulatory protein)
POL_HV1MN Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...

pdb 1AAF

VIF_HV1MN Virion infectivity factor (Vif) (SOR protein) [Cleaved into: p17; p7]
VPR_HV1MN Protein Vpr (R ORF protein) (Viral protein R)
REV_HV1MN Protein Rev (ART/TRS) (Anti-repression transactivator) (Regulator of expression of viral proteins)
VPU_HV1MN Protein Vpu (U ORF protein) (Viral protein U)

9 entries

Human immunodeficiency virus type 1 group M subtype B (isolate RF/HAT3) (HIV-1) reference strain

Select_allDeselect_all
ENV_HV1RH Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...
NEF_HV1RH Protein Nef (3'ORF) (Negative factor) (F-protein) [Cleaved into: C-terminal core protein]
GAG_HV1RH Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...
TAT_HV1RH Protein Tat (Transactivating regulatory protein)
POL_HV1RH Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...

pdb 2FXE

VIF_HV1RH Virion infectivity factor (Vif) (SOR protein) [Cleaved into: p17; p7]
VPR_HV1RH Protein Vpr (R ORF protein) (Viral protein R)

pdb 1FI0

VPU_HV1RH Protein Vpu (U ORF protein) (Viral protein U)
REV_HV1RH Protein Rev (ART/TRS) (Anti-repression transactivator) (Regulator of expression of viral proteins)

9 entries

Human immunodeficiency virus type 1 group M subtype B (strain 89.6) (HIV-1) reference strain

Select_allDeselect_all
GAG_HV1B9 Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...
POL_HV1B9 Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...
TAT_HV1B9 Protein Tat (Transactivating regulatory protein)
ENV_HV1B9 Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...

pdb 4R4H; 5U3K; 5U3L; 5U3M; 5U3N; 5U3O; 6X58

NEF_HV1B9 Protein Nef (3'ORF) (Negative factor) (F-protein) [Cleaved into: C-terminal core protein]
VPR_HV1B9 Protein Vpr (R ORF protein) (Viral protein R)

pdb 1CEU; 1ESX; 1M8L; 1VPC; 1X9V; 5B56

VIF_HV1B9 Virion infectivity factor (Vif) (SOR protein) [Cleaved into: p17; p7]
VPU_HV1B9 Protein Vpu (U ORF protein) (Viral protein U)
REV_HV1B9 Protein Rev (ART/TRS) (Anti-repression transactivator) (Regulator of expression of viral proteins)

9 entries

Human immunodeficiency virus type 1 group M subtype C (isolate 92BR025) (HIV-1) reference strain

Select_allDeselect_all
GAG_HV192 Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...
POL_HV192 Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...

pdb 2R5P; 2R5Q; 2R8N

TAT_HV192 Protein Tat (Transactivating regulatory protein)
ENV_HV192 Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...
NEF_HV192 Protein Nef (3'ORF) (Negative factor) (F-protein) [Cleaved into: C-terminal core protein]
VIF_HV192 Virion infectivity factor (Vif) (SOR protein) [Cleaved into: p17; p7]
VPR_HV192 Protein Vpr (R ORF protein) (Viral protein R)
REV_HV192 Protein Rev (ART/TRS) (Anti-repression transactivator) (Regulator of expression of viral proteins)
VPU_HV192 Protein Vpu (U ORF protein) (Viral protein U)

9 entries

Human immunodeficiency virus type 1 group M subtype C (isolate ETH2220) (HIV-1) reference strain

Select_allDeselect_all
GAG_HV1ET Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...
POL_HV1ET Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...

pdb 6T6I; 6T6J

ENV_HV1ET Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...
NEF_HV1ET Protein Nef (3'ORF) (Negative factor) (F-protein) [Cleaved into: C-terminal core protein]
VIF_HV1ET Virion infectivity factor (Vif) (SOR protein) [Cleaved into: p17; p7]
TAT_HV1ET Protein Tat (Transactivating regulatory protein)
VPU_HV1ET Protein Vpu (U ORF protein) (Viral protein U)
VPR_HV1ET Protein Vpr (R ORF protein) (Viral protein R)
REV_HV1ET Protein Rev (ART/TRS) (Anti-repression transactivator) (Regulator of expression of viral proteins)

9 entries

Human immunodeficiency virus type 1 group M subtype D (isolate ELI) (HIV-1) reference strain

Select_allDeselect_all
ENV_HV1EL Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...
POL_HV1EL Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...
GAG_HV1EL Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...
NEF_HV1EL Protein Nef (3'ORF) (Negative factor) (F-protein) [Cleaved into: C-terminal core protein]
TAT_HV1EL Protein Tat (Transactivating regulatory protein)
VIF_HV1EL Virion infectivity factor (Vif) (SOR protein) [Cleaved into: p17; p7]
REV_HV1EL Protein Rev (ART/TRS) (Anti-repression transactivator) (Regulator of expression of viral proteins)
VPU_HV1EL Protein Vpu (U ORF protein) (Viral protein U)
VPR_HV1EL Protein Vpr (R ORF protein) (Viral protein R)

9 entries

Human immunodeficiency virus type 1 group M subtype F1 (isolate 93BR020) (HIV-1) reference strain

Select_allDeselect_all
TAT_HV193 Protein Tat (Transactivating regulatory protein)
POL_HV193 Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...
GAG_HV193 Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...
ENV_HV193 Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...
NEF_HV193 Protein Nef (3'ORF) (Negative factor) (F-protein) [Cleaved into: C-terminal core protein]
VIF_HV193 Virion infectivity factor (Vif) (SOR protein) [Cleaved into: p17; p7]
VPR_HV193 Protein Vpr (R ORF protein) (Viral protein R)
REV_HV193 Protein Rev (ART/TRS) (Anti-repression transactivator) (Regulator of expression of viral proteins)
VPU_HV193 Protein Vpu (U ORF protein) (Viral protein U)

9 entries

Human immunodeficiency virus type 1 group M subtype F1 (isolate VI850) (HIV-1) reference strain

Select_allDeselect_all
NEF_HV1VI Protein Nef (3'ORF) (Negative factor) (F-protein) [Cleaved into: C-terminal core protein]
ENV_HV1VI Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...
TAT_HV1VI Protein Tat (Transactivating regulatory protein)
POL_HV1VI Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...
GAG_HV1VI Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...
VIF_HV1VI Virion infectivity factor (Vif) (SOR protein) [Cleaved into: p17; p7]
VPU_HV1VI Protein Vpu (U ORF protein) (Viral protein U)
REV_HV1VI Protein Rev (ART/TRS) (Anti-repression transactivator) (Regulator of expression of viral proteins)
VPR_HV1VI Protein Vpr (R ORF protein) (Viral protein R)

9 entries

Human immunodeficiency virus type 1 group M subtype H (isolate 90CF056) (HIV-1) reference strain

Select_allDeselect_all
TAT_HV190 Protein Tat (Transactivating regulatory protein)
ENV_HV190 Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...
NEF_HV190 Protein Nef (3'ORF) (Negative factor) (F-protein) [Cleaved into: C-terminal core protein]
GAG_HV190 Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...
POL_HV190 Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...
VIF_HV190 Virion infectivity factor (Vif) (SOR protein) [Cleaved into: p17; p7]
VPR_HV190 Protein Vpr (R ORF protein) (Viral protein R)
REV_HV190 Protein Rev (ART/TRS) (Anti-repression transactivator) (Regulator of expression of viral proteins)
VPU_HV190 Protein Vpu (U ORF protein) (Viral protein U)

9 entries

Human immunodeficiency virus type 1 group N (isolate YBF30) (HIV-1) reference strain

Select_allDeselect_all
GAG_HV1YF Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...
POL_HV1YF Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...

pdb 7R7W; 7R7Y

TAT_HV1YF Protein Tat (Transactivating regulatory protein)
ENV_HV1YF Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...
NEF_HV1YF Protein Nef (3'ORF) (Negative factor) (F-protein) [Cleaved into: C-terminal core protein]
VIF_HV1YF Virion infectivity factor (Vif) (SOR protein) [Cleaved into: p17; p7]
VPR_HV1YF Protein Vpr (R ORF protein) (Viral protein R)
REV_HV1YF Protein Rev (ART/TRS) (Anti-repression transactivator) (Regulator of expression of viral proteins)
VPU_HV1YF Protein Vpu (U ORF protein) (Viral protein U)

9 entries

Human immunodeficiency virus type 1 group O (isolate ANT70) (HIV-1) reference strain

Select_allDeselect_all
TAT_HV1AN Protein Tat (Transactivating regulatory protein)
GAG_HV1AN Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...
POL_HV1AN Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...
ENV_HV1AN Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...
NEF_HV1AN Protein Nef (3'ORF) (Negative factor) (F-protein) [Cleaved into: C-terminal core protein]

pdb 3WLB

VIF_HV1AN Virion infectivity factor (Vif) (SOR protein) [Cleaved into: p17; p7]
REV_HV1AN Protein Rev (ART/TRS) (Anti-repression transactivator) (Regulator of expression of viral proteins)
VPR_HV1AN Protein Vpr (R ORF protein) (Viral protein R)
VPU_HV1AN Protein Vpu (U ORF protein) (Viral protein U)

9 entries

Human immunodeficiency virus type 2 subtype A (isolate BEN) (HIV-2) reference strain

Select_allDeselect_all
ENV_HV2BE Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...
GAG_HV2BE Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...

pdb 8W52

POL_HV2BE Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...
NEF_HV2BE Protein Nef (3'ORF) (Negative factor) (F-protein)
REV_HV2BE Protein Rev (Regulator of expression of viral proteins)
VIF_HV2BE Virion infectivity factor (Vif) (Q protein) (SOR protein)
TAT_HV2BE Protein Tat (Transactivating regulatory protein)
VPX_HV2BE Protein Vpx (Viral protein X) (X ORF protein)
VPR_HV2BE Protein Vpr (R ORF protein) (Viral protein R)

9 entries

Simian immunodeficiency virus (isolate CPZ GAB1) (SIV-cpz) (Chimpanzee immunodeficiency virus) reference strain

Select_allDeselect_all
ENV_SIVCZ Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...
GAG_SIVCZ Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...
POL_SIVCZ Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...
TAT_SIVCZ Protein Tat (Transactivating regulatory protein)
NEF_SIVCZ Protein Nef (3'ORF) (Negative factor) (F-protein) [Cleaved into: C-terminal core protein]
REV_SIVCZ Protein Rev (ART/TRS) (Anti-repression transactivator) (Regulator of expression of viral proteins)
VIF_SIVCZ Virion infectivity factor (Vif) (Q protein) (SOR protein)
VPU_SIVCZ Protein Vpu (U ORF protein) (Viral protein U)
VPR_SIVCZ Protein Vpr (R ORF protein) (Viral protein R)

9 entries

Simian immunodeficiency virus (isolate EK505) (SIV-cpz) (Chimpanzee immunodeficiency virus) reference strain

Select_allDeselect_all
NEF_SIVEK Protein Nef (3'ORF) (Negative factor) (F-protein) [Cleaved into: C-terminal core protein]
ENV_SIVEK Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...
TAT_SIVEK Protein Tat (Transactivating regulatory protein)
POL_SIVEK Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...
GAG_SIVEK Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...
VPU_SIVEK Protein Vpu (U ORF protein) (Viral protein U)
VIF_SIVEK Virion infectivity factor (Vif) (SOR protein) [Cleaved into: p17; p7]
REV_SIVEK Protein Rev (ART/TRS) (Anti-repression transactivator) (Regulator of expression of viral proteins)
VPR_SIVEK Protein Vpr (R ORF protein) (Viral protein R)

9 entries

Simian immunodeficiency virus (isolate MB66) (SIV-cpz) (Chimpanzee immunodeficiency virus) reference strain

Select_allDeselect_all
NEF_SIVMB Protein Nef (3'ORF) (Negative factor) (F-protein) [Cleaved into: C-terminal core protein]
ENV_SIVMB Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...
TAT_SIVMB Protein Tat (Transactivating regulatory protein)
POL_SIVMB Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...
GAG_SIVMB Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...
VIF_SIVMB Virion infectivity factor (Vif) (SOR protein) [Cleaved into: p17; p7]
VPU_SIVMB Protein Vpu (U ORF protein) (Viral protein U)
REV_SIVMB Protein Rev (ART/TRS) (Anti-repression transactivator) (Regulator of expression of viral proteins)
VPR_SIVMB Protein Vpr (R ORF protein) (Viral protein R)

9 entries

Simian immunodeficiency virus (isolate TAN1) (SIV-cpz) (Chimpanzee immunodeficiency virus) reference strain

Select_allDeselect_all
ENV_SIVTN Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...
POL_SIVTN Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...
GAG_SIVTN Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...
NEF_SIVTN Protein Nef (3'ORF) (Negative factor) (F-protein)
VPU_SIVTN Protein Vpu (U ORF protein) (Viral protein U)
VIF_SIVTN Virion infectivity factor (Vif)
REV_SIVTN Protein Rev (Regulator of expression of viral proteins)
TAT_SIVTN Protein Tat (Transactivating regulatory protein)
VPR_SIVTN Protein Vpr (R ORF protein) (Viral protein R)

6 entries

Caprine arthritis encephalitis virus (strain Cork) (CAEV-Co) reference strain

Select_allDeselect_all
POL_CAEVC Pol polyprotein [Cleaved into: Protease (Retropepsin) (EC 3.4.23.-); Reverse ...
REV_CAEVC Protein Rev (Rev-C)
ENV_CAEVC Envelope glycoprotein (Env polyprotein) [Cleaved into: Surface protein (Glycoprotein 135) (gp135); ...
VPRL_CAEVC Probable Vpr-like protein (Protein S) (Protein Tat)
GAG_CAEVC Gag polyprotein [Cleaved into: Matrix protein p16; Capsid protein p25; Nucleocapsid protein p14]
VIF_CAEVC Virion infectivity factor (Q protein) (SOR protein)

6 entries

Feline immunodeficiency virus (isolate Petaluma) (FIV) reference strain

Select_allDeselect_all
POL_FIVPE Pol polyprotein [Cleaved into: Protease (Retropepsin) (EC 3.4.23.-); Reverse ...

pdb 1B11; 1DUT; 1F7D; 1F7K; 1F7N; 1F7O; 1F7P; 1F7Q; 1F7R; 1FIV; 2FIV; 2HAH; 3FIV; 3OGP; 3OGQ; 4FIV; 4MQ3; 4PA1; 5FIV; 6FIV

ENV_FIVPE Envelope glycoprotein gp150 (Env polyprotein) [Cleaved into: Surface protein (SU) (Glycoprotein 100) ...
GAG_FIVPE Gag polyprotein [Cleaved into: Matrix protein p15 (MA); Capsid protein p24 (CA); p1; Nucleocapsid ...

pdb 2N1R; 4IC9; 4ICA; 5DCK; 5NA2; 5XMF; 5XMM; 6WA3; 6WA4; 6WA5

REV_FIVPE Probable protein Rev (3'ORF) (ART/TRS) (Anti-repression transactivator) (ORF4) (ORFH) (Regulator of ...
VIF_FIVPE Virion infectivity factor
VPRL_FIVPE Probable Vpr-like protein (ORF2) (OrfA) (Protein Tat)

6 entries

Human immunodeficiency virus type 1 group M subtype A (isolate U455) (HIV-1) reference strain

Select_allDeselect_all
GAG_HV1U4 Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...

pdb 1NCP

TAT_HV1U4 Protein Tat (Transactivating regulatory protein)
POL_HV1U4 Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...

pdb 1E27; 1NCP; 3LZS; 3LZU

NEF_HV1U4 Protein Nef (3'ORF) (Negative factor) (F-protein) [Cleaved into: C-terminal core protein]
VIF_HV1U4 Virion infectivity factor (Vif) (SOR protein) [Cleaved into: p17; p7]
REV_HV1U4 Protein Rev (ART/TRS) (Anti-repression transactivator) (Regulator of expression of viral proteins)

6 entries

Jembrana disease virus (JDV) reference strain

Select_allDeselect_all
POL_JEMBR Gag-Pol polyprotein (Pr170Gag-Pol) [Cleaved into: Matrix protein p16 (MA); Capsid protein p26 (CA); ...
GAG_JEMBR Gag polyprotein (Pr53Gag) [Cleaved into: Matrix protein p16 (MA); Capsid protein p26 (CA); ...
TAT_JEMBR Protein Tat (Transactivating regulatory protein) (jTat)

pdb 1ZBN

REV_JEMBR Protein Rev
ENV_JEMBR Envelope glycoprotein (Env polyprotein) [Cleaved into: Surface protein (SU) (Glycoprotein 62) ...
VIF_JEMBR Virion infectivity factor (Vif)

1 entry

Simian immunodeficiency virus AGM.tantalus (SIV-agm.tan) (Simian immunodeficiency virus African green monkey tantalus) reference strain

VIF_SIVTA Virion infectivity factor (Vif) (Q protein) (SOR protein)

9 entries

Human immunodeficiency virus type 1 group M subtype B (isolate BH10) (HIV-1)

Select_allDeselect_all
GAG_HV1B1 Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...

pdb 2BUO; 5KP9; 6BHR

POL_HV1B1 Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...

pdb 1A9M; 1AJV; 1AJX; 1AXA; 1BQM; 1BQN; 1D4H; 1D4I; 1D4J; 1DLO; 1DW6; 1EBK; 1EBW; 1EBY; 1EBZ; 1EC0; 1EC1; 1EC2; 1EC3; 1EET; 1G35; 1GNM; 1GNN; 1GNO; 1HAR; 1HBV; 1HEF; 1HEG; 1HIH; 1HMV; 1HNI; 1HNV; 1HOS; 1HPS; 1HPZ; 1HQE; 1HQU; 1HRH; 1HTE; 1HTF; 1HTG; 1HVI; 1HVK; 1HVU; 1HYS; 1IKV; 1IKW; 1IKX; 1IKY; 1J5O; 1KJH; 1MER; 1MES; 1MET; 1MEU; 1N5Y; 1N6Q; 1NPA; 1NPV; 1NPW; 1QE1; 1QMC; 1R0A; 1RDH; 1RTD; 1S6P; 1S6Q; 1S9E; 1S9G; 1SBG; 1SUQ; 1SV5; 1T03; 1T05; 1T7K; 1TV6; 1TVR; 1UWB; 1W5V; 1W5W; 1W5X; 1W5Y; 1YT9; 1ZP8; 1ZPA; 1ZSF; 1ZSR; 2AQU; 2B5J; 2B6A; 2BAN; 2BBB; 2BE2; 2EXF; 2G69; 2HB3; 2HMI; 2HNZ; 2HS1; 2HS2; 2I4D; 2I4U; 2I4V; 2I4W; 2I4X; 2I5J; 2IAJ; 2IC3; 2IDW; 2IEO; 2JZW; 2L45; 2L46; 2L4L; 2UXZ; 2UY0; 2VG5; 2VG6; 2VG7; 2X4U; 2YKM; 2YKN; 2ZD1; 2ZE2; 3AVI; 3BGR; 3DLK; 3GGA; 3GGV; 3GGX; 3HVT; 3IG1; 3IRX; 3IS9; 3ISN; 3ITH; 3JSM; 3JYT; 3K2P; 3K4V; 3KLE; 3KLF; 3KLG; 3KLH; 3KLI; 3NDT; 3NU3; 3NU4; 3NU5; 3NU6; 3NU9; 3NUJ; 3NUO; 3OK9; 3PSU; 3QAA; 3QLH; 3QO9; 3TKG; 3TKW; 3TL9; 3TLH; 3V4I; 3V6D; 3V81; 3ZPS; 3ZPT; 3ZPU; 4COE; 4CP7; 4CPQ; 4CPR; 4CPS; 4CPT; 4CPU; 4CPW; 4CPX; 4DG1; 4G1Q; 4G8G; 4G8I; 4G9D; 4G9F; 4H4M; 4H4O; 4I2P; 4I2Q; 4ICL; 4ID5; 4IDK; 4IFV; 4IFY; 4IG0; 4IG3; 4KFB; 4KKO; 4KO0; 4LSL; 4LSN; 4MFB; 4O44; 4O4G; 4OJR; 4PQU; 4PUO; 4PWD; 4Q0B; 4QAG; 4R5P; 4RW4; 4RW6; 4RW7; 4RW8; 4RW9; 4U8W; 4WE1; 4YE3; 4YHQ; 4ZIP; 4ZLS; 5AGZ; 5AH6; 5AH7; 5AH8; 5AH9; 5AHA; 5AHB; 5AHC; 5BRY; 5BS4; 5C24; 5C25; 5C42; 5CYM; 5CYQ; 5D3G; 5FDL; 5HBM; 5HLF; 5HP1; 5HRO; 5I3U; 5I42; 5J1E; 5JFP; 5JFU; 5JG1; 5OI2; 5OI3; 5OI5; 5OI8; 5OIA; 5T6Z; 5T70; 5TER; 5TUQ; 5TW3; 5TXL; 5TXM; 5TXN; 5TXO; 5TXP; 5UFZ; 5ULT; 5UOV; 5UPZ; 5UV5; 5V5L; 5V5M; 5VQQ; 5VQR; 5VQS; 5VQT; 5VQU; 5VQV; 5VQW; 5VQX; 5VQY; 5VQZ; 5W5W; 5YOJ; 6AMO; 6AN2; 6AN8; 6ANQ; 6AOC; 6ASW; 6AVM; 6AVT; 6B19; 6BZ2; 6C0J; 6C0K; 6C0L; 6C0N; 6C0O; 6C0P; 6C0R; 6C8X; 6C8Y; 6CGF; 6D0D; 6D0E; 6DTW; 6DTX; 6DUF; 6DUG; 6DUH; 6ECL; 6ELI; 6HAK; 6KMP; 6O48; 6O9E; 6OE3; 6OUN; 6PRF; 6UL5; 6VUG; 6WAZ; 6WB0; 6WB1; 6WB2; 6X47; 6X49; 6X4A; 6X4B; 6X4C; 6X4D; 6X4E; 6X4F; 7AHX; 7AID; 7AIF; 7AIG; 7AII; 7AIJ; 7KJV; 7KJW; 7KJX; 7KRC; 7KRD; 7KRE; 7KRF; 7KWU; 7LPW; 7LPX; 7LQU; 7LRI; 7LRM; 7LRX; 7LRY; 7LSK; 7OT6; 7OTA; 7OTK; 7OTN; 7OTX; 7OTZ; 7OUT; 7OXQ; 7OZ2; 7OZ5; 7OZW; 7P15; 7SEP; 7SIF; 7SIG; 7SIH; 7SJX; 7SNL; 7SNN; 7SNP; 7SNQ; 7SNZ; 7SO1; 7SO2; 7SO3; 7SO4; 7SO6; 7TAZ; 7U5Z; 7Z24; 7Z29; 7Z2D; 7Z2E; 7Z2G; 7Z2H; 8DX2; 8DX3; 8DX8; 8DXB; 8DXE; 8DXG; 8DXH; 8DXI; 8DXJ; 8DXK; 8DXL; 8DXM; 8FE8; 8FFX; 8STP; 8STQ; 8STR; 8STS; 8STT; 8STU; 8STV; 8U69; 8U6A; 8U6B; 8U6C; 8U6D; 8U6E; 8U6F; 8U6G; 8U6H; 8U6I; 8U6J; 8U6K; 8U6L; 8U6M; 8U6N; 8U6O; 8U6P; 8U6Q; 8U6R; 8U6S; 8U6T; 8V8F; 8VB6; 8VB7; 8VB8; 8VB9; 8VBC; 8VBD; 8VBE; 8VBF; 8VBG; 8VBH; 8VBI

ENV_HV1B1 Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...

pdb 2ARI; 3VGY; 3VH7; 3VU5; 3VU6; 3W19; 6ME1

NEF_HV1B1 Protein Nef (3'ORF) (Negative factor) (F-protein) [Cleaved into: C-terminal core protein]

pdb 1ZEC; 3TB8

REV_HV1B1 Protein Rev (ART/TRS) (Anti-repression transactivator) (Regulator of expression of viral proteins)

pdb 2X7L; 5DHV; 5DHX; 5DHY; 5DHZ; 6BSY; 6CF2; 7U0F

TAT_HV1B1 Protein Tat (Transactivating regulatory protein)

pdb 5L1Z

VPU_HV1B1 Protein Vpu (U ORF protein) (Viral protein U)

pdb 2JPX; 2N28

VIF_HV1B1 Virion infectivity factor (Vif) (SOR protein) [Cleaved into: p17; p7]
VPR_HV1B1 Protein Vpr (R ORF protein) (Viral protein R)

9 entries

Human immunodeficiency virus type 1 group M subtype B (isolate JRCSF) (HIV-1)

Select_allDeselect_all
NEF_HV1JR Protein Nef (3'ORF) (Negative factor) (F-protein) [Cleaved into: C-terminal core protein]
ENV_HV1JR Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...

pdb 1CE4; 2ESX; 2ESZ; 4R2G; 5V6L; 5V6M

GAG_HV1JR Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...
POL_HV1JR Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...

pdb 1KJ4; 1KJ7; 1KJF

TAT_HV1JR Protein Tat (Transactivating regulatory protein)
VIF_HV1JR Virion infectivity factor (Vif) (SOR protein) [Cleaved into: p17; p7]
VPR_HV1JR Protein Vpr (R ORF protein) (Viral protein R)
REV_HV1JR Protein Rev (ART/TRS) (Anti-repression transactivator) (Regulator of expression of viral proteins)
VPU_HV1JR Protein Vpu (U ORF protein) (Viral protein U)

9 entries

Human immunodeficiency virus type 1 group M subtype B (isolate YU-2) (HIV-1)

Select_allDeselect_all
NEF_HV1Y2 Protein Nef (3'ORF) (Negative factor) (F-protein) [Cleaved into: C-terminal core protein]
ENV_HV1Y2 Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...

pdb 1G9N; 1RZK; 1YYL; 1YYM; 2I5Y; 2I60; 2NY7; 2QAD; 3HI1; 3TGQ; 4DVR; 4JO3; 4JZW; 4JZZ; 4K0A; 4KA2; 4LAJ; 4R4F; 4RQS; 4RWY; 5A7X; 5A8H

GAG_HV1Y2 Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...

pdb 1F6U; 1MFS; 2R05; 8D3B

POL_HV1Y2 Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...

pdb 1F6U; 1K6C; 1K6P; 1K6T; 1K6V; 1MFS; 1T7I; 1T7J; 1WJA; 1WJC; 2JO0; 2L6E; 3OQ7; 3OQA; 3OQD; 3OTS; 3OTY; 3OU1; 3OU3; 3OU4; 3OUA; 3OUB; 3OUC; 3OUD; 3PJ6; 3U7S; 4A6B; 4A6C

TAT_HV1Y2 Protein Tat (Transactivating regulatory protein)
VIF_HV1Y2 Virion infectivity factor (Vif) (SOR protein) [Cleaved into: p17; p7]
VPU_HV1Y2 Protein Vpu (U ORF protein) (Viral protein U)
VPR_HV1Y2 Protein Vpr (R ORF protein) (Viral protein R)
REV_HV1Y2 Protein Rev (ART/TRS) (Anti-repression transactivator) (Regulator of expression of viral proteins)

9 entries

Human immunodeficiency virus type 1 group N (isolate YBF106) (HIV-1)

Select_allDeselect_all
NEF_HV1YB Protein Nef (3'ORF) (Negative factor) (F-protein) [Cleaved into: C-terminal core protein]
ENV_HV1YB Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...
TAT_HV1YB Protein Tat (Transactivating regulatory protein)
GAG_HV1YB Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...
POL_HV1YB Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...

pdb 2HJL

VIF_HV1YB Virion infectivity factor (Vif) (SOR protein) [Cleaved into: p17; p7]
VPU_HV1YB Protein Vpu (U ORF protein) (Viral protein U)
REV_HV1YB Protein Rev (ART/TRS) (Anti-repression transactivator) (Regulator of expression of viral proteins)
VPR_HV1YB Protein Vpr (R ORF protein) (Viral protein R)

9 entries

Human immunodeficiency virus type 1 group O (isolate MVP5180) (HIV-1)

Select_allDeselect_all
TAT_HV1MV Protein Tat (Transactivating regulatory protein)
GAG_HV1MV Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...

pdb 7T12

POL_HV1MV Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...
ENV_HV1MV Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...
NEF_HV1MV Protein Nef (3'ORF) (Negative factor) (F-protein) [Cleaved into: C-terminal core protein]
VIF_HV1MV Virion infectivity factor (Vif) (SOR protein) [Cleaved into: p17; p7]
REV_HV1MV Protein Rev (ART/TRS) (Anti-repression transactivator) (Regulator of expression of viral proteins)
VPR_HV1MV Protein Vpr (R ORF protein) (Viral protein R)
VPU_HV1MV Protein Vpu (U ORF protein) (Viral protein U)

9 entries

Human immunodeficiency virus type 2 subtype A (isolate CAM2) (HIV-2)

Select_allDeselect_all
ENV_HV2CA Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...
GAG_HV2CA Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...
POL_HV2CA Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...
NEF_HV2CA Protein Nef (3'ORF) (Negative factor) (F-protein)
VIF_HV2CA Virion infectivity factor (Vif) (Q protein) (SOR protein)
TAT_HV2CA Protein Tat (Transactivating regulatory protein)
REV_HV2CA Protein Rev (Regulator of expression of viral proteins)
VPX_HV2CA Protein Vpx (Viral protein X) (X ORF protein)
VPR_HV2CA Protein Vpr (R ORF protein) (Viral protein R)

9 entries

Human immunodeficiency virus type 2 subtype A (isolate D194) (HIV-2)

Select_allDeselect_all
ENV_HV2D1 Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...
GAG_HV2D1 Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...
POL_HV2D1 Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...
NEF_HV2D1 Protein Nef (3'ORF) (Negative factor) (F-protein)
REV_HV2D1 Protein Rev (Regulator of expression of viral proteins)
VIF_HV2D1 Virion infectivity factor (Vif) (Q protein) (SOR protein)
TAT_HV2D1 Protein Tat (Transactivating regulatory protein)
VPR_HV2D1 Protein Vpr (R ORF protein) (Viral protein R)
VPX_HV2D1 Protein Vpx (Viral protein X) (X ORF protein)

9 entries

Human immunodeficiency virus type 2 subtype A (isolate Ghana-1) (HIV-2)

Select_allDeselect_all
ENV_HV2G1 Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...
GAG_HV2G1 Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...

pdb 1NC8; 2DI2; 2EC7

POL_HV2G1 Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...

pdb 1NC8; 2E1X; 2IWJ; 9CLJ; 9CNS; 9CNT; 9CNU; 9CNV

NEF_HV2G1 Protein Nef (3'ORF) (Negative factor) (F-protein)
VIF_HV2G1 Virion infectivity factor (Vif) (Q protein) (SOR protein)
TAT_HV2G1 Protein Tat (Transactivating regulatory protein)
VPX_HV2G1 Protein Vpx (Viral protein X) (X ORF protein)
REV_HV2G1 Protein Rev (Regulator of expression of viral proteins)
VPR_HV2G1 Protein Vpr (R ORF protein) (Viral protein R)

9 entries

Human immunodeficiency virus type 2 subtype A (isolate KR) (HIV-2)

Select_allDeselect_all
GAG_HV2KR Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...
POL_HV2KR Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...
ENV_HV2KR Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...
VIF_HV2KR Virion infectivity factor (Vif) (Q protein) (SOR protein)
TAT_HV2KR Protein Tat (Transactivating regulatory protein)
NEF_HV2KR Protein Nef (3'ORF) (Negative factor) (F-protein)
VPX_HV2KR Protein Vpx (Viral protein X) (X ORF protein)
VPR_HV2KR Protein Vpr (R ORF protein) (Viral protein R)
REV_HV2KR Protein Rev (Regulator of expression of viral proteins)

9 entries

Human immunodeficiency virus type 2 subtype A (isolate NIH-Z) (HIV-2)

Select_allDeselect_all
ENV_HV2NZ Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...
GAG_HV2NZ Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...
POL_HV2NZ Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...
NEF_HV2NZ Protein Nef (3'ORF) (Negative factor) (F-protein)
VIF_HV2NZ Virion infectivity factor (Vif) (Q protein) (SOR protein)
TAT_HV2NZ Protein Tat (Transactivating regulatory protein)
VPX_HV2NZ Protein Vpx (Viral protein X) (X ORF protein)
VPR_HV2NZ Protein Vpr (R ORF protein) (Viral protein R)
REV_HV2NZ Protein Rev (Regulator of expression of viral proteins)

9 entries

Human immunodeficiency virus type 2 subtype A (isolate ROD) (HIV-2)

Select_allDeselect_all
ENV_HV2RO Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...
POL_HV2RO Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...

pdb 1E0E; 1HII; 1HSH; 1HSI; 1IDA; 1IDB; 1IVP; 1IVQ; 1JLD; 1MU2; 2HPE; 2HPF; 2K4E; 2K4H; 2K4I; 2MIP; 3EBZ; 3EC0; 3ECG; 3F9K; 3UPJ; 4UPJ; 5UPJ; 6UPJ

GAG_HV2RO Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...

pdb 2WLV; 4DGB; 7TV2; 8FZC

VPX_HV2RO Protein Vpx (Viral protein X) (X ORF protein)
NEF_HV2RO Protein Nef (3'ORF) (Negative factor) (F-protein)
VIF_HV2RO Virion infectivity factor (Vif) (Q protein) (SOR protein)
TAT_HV2RO Protein Tat (Transactivating regulatory protein)
REV_HV2RO Protein Rev (Regulator of expression of viral proteins)
VPR_HV2RO Protein Vpr (R ORF protein) (Viral protein R)

9 entries

Human immunodeficiency virus type 2 subtype A (isolate SBLISY) (HIV-2)

Select_allDeselect_all
ENV_HV2SB Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...
GAG_HV2SB Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...
POL_HV2SB Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...
NEF_HV2SB Protein Nef (3'ORF) (Negative factor) (F-protein)
VIF_HV2SB Virion infectivity factor (Vif) (Q protein) (SOR protein)
TAT_HV2SB Protein Tat (Transactivating regulatory protein)
VPX_HV2SB Protein Vpx (Viral protein X) (X ORF protein)
REV_HV2SB Protein Rev (Regulator of expression of viral proteins)
VPR_HV2SB Protein Vpr (R ORF protein) (Viral protein R)

9 entries

Human immunodeficiency virus type 2 subtype A (isolate ST) (HIV-2)

Select_allDeselect_all
ENV_HV2ST Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...

pdb 5CAY

GAG_HV2ST Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...
POL_HV2ST Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...
TAT_HV2ST Protein Tat (Transactivating regulatory protein)
NEF_HV2ST Protein Nef (3'ORF) (Negative factor) (F-protein)
VIF_HV2ST Virion infectivity factor (Vif) (Q protein) (SOR protein)
VPX_HV2ST Protein Vpx (Viral protein X) (X ORF protein)
VPR_HV2ST Protein Vpr (R ORF protein) (Viral protein R)
REV_HV2ST Protein Rev (Regulator of expression of viral proteins)

9 entries

Human immunodeficiency virus type 2 subtype B (isolate EHO) (HIV-2)

Select_allDeselect_all
GAG_HV2EH Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...
ENV_HV2EH Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...
POL_HV2EH Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...
NEF_HV2EH Protein Nef (3'ORF) (Negative factor) (F-protein)
REV_HV2EH Protein Rev (Regulator of expression of viral proteins)
TAT_HV2EH Protein Tat (Transactivating regulatory protein)
VIF_HV2EH Virion infectivity factor (Vif) (Q protein) (SOR protein)
VPR_HV2EH Protein Vpr (Viral protein R)
VPX_HV2EH Protein Vpx (Viral protein X) (X ORF protein)

9 entries

Human immunodeficiency virus type 2 subtype B (isolate UC1) (HIV-2)

Select_allDeselect_all
GAG_HV2UC Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...
POL_HV2UC Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...
ENV_HV2UC Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...
TAT_HV2UC Protein Tat (Transactivating regulatory protein)
VIF_HV2UC Virion infectivity factor (Vif) (Q protein) (SOR protein)
NEF_HV2UC Protein Nef (3'ORF) (Negative factor) (F-protein)
REV_HV2UC Protein Rev (Regulator of expression of viral proteins)
VPX_HV2UC Protein Vpx (Viral protein X) (X ORF protein)
VPR_HV2UC Protein Vpr (R ORF protein) (Viral protein R)

9 entries

Simian immunodeficiency virus (isolate F236/smH4) (SIV-sm) (Simian immunodeficiency virus sooty mangabey monkey)

Select_allDeselect_all
ENV_SIVS4 Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...

pdb 2SIV

GAG_SIVS4 Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...
POL_SIVS4 Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...
NEF_SIVS4 Protein Nef (3'ORF) (Negative factor) (F-protein)

pdb 4ZFZ

VIF_SIVS4 Virion infectivity factor (Vif) (Q protein) (SOR protein)
VPX_SIVS4 Protein Vpx (Viral protein X) (X ORF protein)
REV_SIVS4 Protein Rev (Regulator of expression of viral proteins)
TAT_SIVS4 Protein Tat (Transactivating regulatory protein)
VPR_SIVS4 Protein Vpr (R ORF protein) (Viral protein R)

9 entries

Simian immunodeficiency virus (isolate Mm142-83) (SIV-mac) (Simian immunodeficiency virus rhesus monkey)

Select_allDeselect_all
ENV_SIVM1 Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...
GAG_SIVM1 Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...
POL_SIVM1 Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...

pdb 1AZ5; 1C6V; 1SIV; 1TCW; 1YTI; 1YTJ

NEF_SIVM1 Protein Nef (3'ORF) (Negative factor) (F-protein)
VIF_SIVM1 Virion infectivity factor (Vif) (Q protein) (SOR protein)
VPR_SIVM1 Protein Vpr (R ORF protein) (Viral protein R)
REV_SIVM1 Protein Rev (Regulator of expression of viral proteins)
TAT_SIVM1 Protein Tat (Transactivating regulatory protein)
VPX_SIVM1 Protein Vpx (Viral protein X) (X ORF protein)

9 entries

Simian immunodeficiency virus (isolate Mm251) (SIV-mac) (Simian immunodeficiency virus rhesus monkey)

Select_allDeselect_all
GAG_SIVM2 Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...

pdb 2XS1; 7P3M

POL_SIVM2 Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...

pdb 1C6V; 1ECW; 1ED1

ENV_SIVM2 Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...

pdb 2EZP; 6VRY

NEF_SIVM2 Protein Nef (3'ORF) (Negative factor) (F-protein)
VIF_SIVM2 Virion infectivity factor (Vif) (Q protein) (SOR protein)
TAT_SIVM2 Protein Tat (Transactivating regulatory protein)
VPR_SIVM2 Protein Vpr (R ORF protein) (Viral protein R)
VPX_SIVM2 Protein Vpx (Viral protein X) (X ORF protein)
REV_SIVM2 Protein Rev (Regulator of expression of viral proteins)

9 entries

Simian immunodeficiency virus (isolate PBj14/BCL-3) (SIV-sm) (Simian immunodeficiency virus sooty mangabey monkey)

Select_allDeselect_all
ENV_SIVSP Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...

pdb 7LVB

GAG_SIVSP Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...
POL_SIVSP Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...

pdb 3JTS

VPX_SIVSP Protein Vpx (Viral protein X) (X ORF protein)

pdb 4CC9

NEF_SIVSP Protein Nef (3'ORF) (Negative factor) (F-protein)
VIF_SIVSP Virion infectivity factor (Vif) (Q protein) (SOR protein)
VPR_SIVSP Protein Vpr (R ORF protein) (Viral protein R)
REV_SIVSP Protein Rev (Regulator of expression of viral proteins)
TAT_SIVSP Protein Tat (Transactivating regulatory protein)

8 entries

Bovine immunodeficiency virus (strain R29) (BIV) (Bovine immunodeficiency-like virus)

Select_allDeselect_all
ENV_BIV29 Envelope glycoprotein (Env polyprotein) [Cleaved into: Surface protein (SU) (Glycoprotein 62) ...
GAG_BIV29 Gag polyprotein (Pr53Gag) [Cleaved into: Matrix protein p16 (MA); p2L; Capsid protein p26 (CA); p3; ...
POL_BIV29 Gag-Pol polyprotein (Pr170Gag-Pol) [Cleaved into: Matrix protein p16 (MA); p2L; Capsid protein p26 ...

pdb 3KKR; 3KKS

TAT_BIV29 Protein Tat (S ORF) (Transactivating regulatory protein) (bTat)

pdb 1BIV; 1MNB

VIF_BIV29 Virion infectivity factor (Q protein)
REV_BIV29 Protein Rev
VPW_BIV29 Protein Vpw
VPY_BIV29 Protein Vpy

8 entries

Human immunodeficiency virus type 1 group M subtype B (isolate OYI) (HIV-1)

Select_allDeselect_all
NEF_HV1OY Protein Nef (3'ORF) (Negative factor) (F-protein) [Cleaved into: C-terminal core protein]
ENV_HV1OY Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...
GAG_HV1OY Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...
POL_HV1OY Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...
TAT_HV1OY Protein Tat (Transactivating regulatory protein)
VIF_HV1OY Virion infectivity factor (Vif) (SOR protein) [Cleaved into: p17; p7]
REV_HV1OY Protein Rev (ART/TRS) (Anti-repression transactivator) (Regulator of expression of viral proteins)
VPR_HV1OY Protein Vpr (R ORF protein) (Viral protein R)

8 entries

Human immunodeficiency virus type 1 group M subtype D (isolate NDK) (HIV-1)

Select_allDeselect_all
ENV_HV1ND Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...
GAG_HV1ND Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...
NEF_HV1ND Protein Nef (3'ORF) (Negative factor) (F-protein) [Cleaved into: C-terminal core protein]
POL_HV1ND Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...
TAT_HV1ND Protein Tat (Transactivating regulatory protein)
VIF_HV1ND Virion infectivity factor (Vif) (SOR protein) [Cleaved into: p17; p7]
VPU_HV1ND Protein Vpu (U ORF protein) (Viral protein U)
REV_HV1ND Protein Rev (ART/TRS) (Anti-repression transactivator) (Regulator of expression of viral proteins)

8 entries

Human immunodeficiency virus type 1 group M subtype D (isolate Z2/CDC-Z34) (HIV-1)

Select_allDeselect_all
ENV_HV1Z2 Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...

pdb 3UIA

GAG_HV1Z2 Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...

pdb 1SJE; 1SJH; 3D3T

POL_HV1Z2 Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...

pdb 1E28; 1HXW; 1P7Q; 1PRO; 1Q94; 1VIJ; 1VIK; 2WKZ; 2WL0; 2XYE; 2XYF; 3KF0; 3KFN; 3KFP; 3KFR; 3KFS; 3W39; 4DQB; 4DQC; 4DQE; 4DQF; 4DQG; 4DQH; 4E43; 4EJ8; 4EJD; 4EJK; 4EJL; 4K4P; 4K4Q; 4K4R

TAT_HV1Z2 Protein Tat (Transactivating regulatory protein)

pdb 1TAC; 1TBC; 1TIV; 2BGN; 2BGR; 8CCW; 8CCZ

VIF_HV1Z2 Virion infectivity factor (Vif) (SOR protein) [Cleaved into: p17; p7]
VPR_HV1Z2 Protein Vpr (R ORF protein) (Viral protein R)
REV_HV1Z2 Protein Rev (ART/TRS) (Anti-repression transactivator) (Regulator of expression of viral proteins)
VPU_HV1Z2 Protein Vpu (U ORF protein) (Viral protein U)

8 entries

Human immunodeficiency virus type 1 group M subtype F2 (isolate MP255) (HIV-1)

Select_allDeselect_all
TAT_HV1MP Protein Tat (Transactivating regulatory protein)
NEF_HV1MP Protein Nef (3'ORF) (Negative factor) (F-protein) [Cleaved into: C-terminal core protein]
ENV_HV1MP Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...
POL_HV1MP Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...
GAG_HV1MP Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...
VIF_HV1MP Virion infectivity factor (Vif) (SOR protein) [Cleaved into: p17; p7]
VPR_HV1MP Protein Vpr (R ORF protein) (Viral protein R)
REV_HV1MP Protein Rev (ART/TRS) (Anti-repression transactivator) (Regulator of expression of viral proteins)

8 entries

Human immunodeficiency virus type 1 group M subtype F2 (isolate MP257) (HIV-1)

Select_allDeselect_all
TAT_HV1M2 Protein Tat (Transactivating regulatory protein)
NEF_HV1M2 Protein Nef (3'ORF) (Negative factor) (F-protein) [Cleaved into: C-terminal core protein]
ENV_HV1M2 Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...
POL_HV1M2 Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...
GAG_HV1M2 Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...
VIF_HV1M2 Virion infectivity factor (Vif) (SOR protein) [Cleaved into: p17; p7]
VPR_HV1M2 Protein Vpr (R ORF protein) (Viral protein R)
REV_HV1M2 Protein Rev (ART/TRS) (Anti-repression transactivator) (Regulator of expression of viral proteins)

8 entries

Human immunodeficiency virus type 1 group M subtype G (isolate 92NG083) (HIV-1)

Select_allDeselect_all
POL_HV19N Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...
TAT_HV19N Protein Tat (Transactivating regulatory protein)
ENV_HV19N Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...
NEF_HV19N Protein Nef (3'ORF) (Negative factor) (F-protein) [Cleaved into: C-terminal core protein]
GAG_HV19N Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...
VIF_HV19N Virion infectivity factor (Vif) (SOR protein) [Cleaved into: p17; p7]
VPR_HV19N Protein Vpr (R ORF protein) (Viral protein R)
REV_HV19N Protein Rev (ART/TRS) (Anti-repression transactivator) (Regulator of expression of viral proteins)

8 entries

Human immunodeficiency virus type 1 group M subtype H (isolate VI991) (HIV-1)

Select_allDeselect_all
NEF_HV1V9 Protein Nef (3'ORF) (Negative factor) (F-protein) [Cleaved into: C-terminal core protein]
ENV_HV1V9 Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...

pdb 3UJJ; 7Z7C; 8AED

TAT_HV1V9 Protein Tat (Transactivating regulatory protein)
POL_HV1V9 Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...
GAG_HV1V9 Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...
VIF_HV1V9 Virion infectivity factor (Vif) (SOR protein) [Cleaved into: p17; p7]
REV_HV1V9 Protein Rev (ART/TRS) (Anti-repression transactivator) (Regulator of expression of viral proteins)
VPR_HV1V9 Protein Vpr (R ORF protein) (Viral protein R)

8 entries

Human immunodeficiency virus type 1 group M subtype J (isolate SE9173) (HIV-1)

Select_allDeselect_all
GAG_HV1S9 Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...

pdb 2R02

POL_HV1S9 Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...
TAT_HV1S9 Protein Tat (Transactivating regulatory protein)
ENV_HV1S9 Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...
NEF_HV1S9 Protein Nef (3'ORF) (Negative factor) (F-protein) [Cleaved into: C-terminal core protein]
VIF_HV1S9 Virion infectivity factor (Vif) (SOR protein) [Cleaved into: p17; p7]
VPR_HV1S9 Protein Vpr (R ORF protein) (Viral protein R)
REV_HV1S9 Protein Rev (ART/TRS) (Anti-repression transactivator) (Regulator of expression of viral proteins)

8 entries

Human immunodeficiency virus type 1 group M subtype J (isolate SE9280) (HIV-1)

Select_allDeselect_all
GAG_HV1S2 Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...
POL_HV1S2 Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...
TAT_HV1S2 Protein Tat (Transactivating regulatory protein)
ENV_HV1S2 Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...
NEF_HV1S2 Protein Nef (3'ORF) (Negative factor) (F-protein) [Cleaved into: C-terminal core protein]
VIF_HV1S2 Virion infectivity factor (Vif) (SOR protein) [Cleaved into: p17; p7]
VPR_HV1S2 Protein Vpr (R ORF protein) (Viral protein R)
REV_HV1S2 Protein Rev (ART/TRS) (Anti-repression transactivator) (Regulator of expression of viral proteins)

8 entries

Human immunodeficiency virus type 1 group M subtype K (isolate 96CM-MP535) (HIV-1)

Select_allDeselect_all
TAT_HV196 Protein Tat (Transactivating regulatory protein)
NEF_HV196 Protein Nef (3'ORF) (Negative factor) (F-protein) [Cleaved into: C-terminal core protein]
ENV_HV196 Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...
POL_HV196 Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...
GAG_HV196 Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...
VIF_HV196 Virion infectivity factor (Vif) (SOR protein) [Cleaved into: p17; p7]
VPR_HV196 Protein Vpr (R ORF protein) (Viral protein R)
REV_HV196 Protein Rev (ART/TRS) (Anti-repression transactivator) (Regulator of expression of viral proteins)

8 entries

Human immunodeficiency virus type 1 group M subtype K (isolate 97ZR-EQTB11) (HIV-1)

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TAT_HV197 Protein Tat (Transactivating regulatory protein)
NEF_HV197 Protein Nef (3'ORF) (Negative factor) (F-protein) [Cleaved into: C-terminal core protein]
ENV_HV197 Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...
POL_HV197 Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...
GAG_HV197 Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...
VIF_HV197 Virion infectivity factor (Vif) (SOR protein) [Cleaved into: p17; p7]
VPR_HV197 Protein Vpr (R ORF protein) (Viral protein R)
REV_HV197 Protein Rev (ART/TRS) (Anti-repression transactivator) (Regulator of expression of viral proteins)

8 entries

Human immunodeficiency virus type 2 subtype B (isolate D205) (HIV-2)

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ENV_HV2D2 Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...
GAG_HV2D2 Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...
POL_HV2D2 Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...
NEF_HV2D2 Protein Nef (3'ORF) (Negative factor) (F-protein)
REV_HV2D2 Protein Rev (Regulator of expression of viral proteins)
VIF_HV2D2 Virion infectivity factor (Vif) (Q protein) (SOR protein)
VPX_HV2D2 Protein Vpx (Viral protein X) (X ORF protein)
VPR_HV2D2 Protein Vpr (R ORF protein) (Viral protein R)

8 entries

Simian immunodeficiency virus (isolate GB1) (SIV-mnd) (Simian immunodeficiency virus mandrill)

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ENV_SIVGB Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...
GAG_SIVGB Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...
POL_SIVGB Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...
NEF_SIVGB Protein Nef (3'ORF) (Negative factor) (F-protein)
VIF_SIVGB Virion infectivity factor (Vif) (Q protein) (SOR protein)
REV_SIVGB Protein Rev (Regulator of expression of viral proteins)
TAT_SIVGB Protein Tat (Transactivating regulatory protein)
VPR_SIVGB Protein Vpr (R ORF protein) (Viral protein R)

8 entries

Simian immunodeficiency virus agm.grivet (isolate AGM gr-1) (SIV-agm.gri) (Simian immunodeficiency virus African green monkey grivet)

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POL_SIVG1 Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...
ENV_SIVG1 Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...
GAG_SIVG1 Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...

pdb 2XS8

REV_SIVG1 Protein Rev (Regulator of expression of viral proteins)
NEF_SIVG1 Protein Nef (3'ORF) (Negative factor) (F-protein)
VIF_SIVG1 Virion infectivity factor (Vif) (Q protein) (SOR protein)
TAT_SIVG1 Protein Tat (Transactivating regulatory protein)
VPX_SIVG1 Protein Vpx (Viral protein X) (X ORF protein)

8 entries

Simian immunodeficiency virus agm.vervet (isolate AGM TYO-1) (SIV-agm.ver) (Simian immunodeficiency virus African green monkey vervet)

Select_allDeselect_all
ENV_SIVVT Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...
GAG_SIVVT Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...
POL_SIVVT Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...
NEF_SIVVT Protein Nef (3'ORF) (Negative factor) (F-protein)
VIF_SIVVT Virion infectivity factor (Vif) (Q protein) (SOR protein)
REV_SIVVT Protein Rev (Regulator of expression of viral proteins)
TAT_SIVVT Protein Tat (Transactivating regulatory protein)
VPX_SIVVT Protein Vpx (Viral protein X) (X ORF protein)

8 entries

Simian immunodeficiency virus agm.vervet (isolate AGM155) (SIV-agm.ver) (Simian immunodeficiency virus African green monkey vervet)

Select_allDeselect_all
ENV_SIVV1 Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...
GAG_SIVV1 Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...
POL_SIVV1 Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...
NEF_SIVV1 Protein Nef (3'ORF) (Negative factor) (F-protein)
VIF_SIVV1 Virion infectivity factor (Vif) (Q protein) (SOR protein)
REV_SIVV1 Protein Rev (Regulator of expression of viral proteins)
TAT_SIVV1 Protein Tat (Transactivating regulatory protein)
VPX_SIVV1 Protein Vpx (Viral protein X) (X ORF protein)

8 entries

Simian immunodeficiency virus agm.vervet (isolate AGM3) (SIV-agm.ver) (Simian immunodeficiency virus African green monkey vervet)

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ENV_SIVVG Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...
GAG_SIVVG Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...
POL_SIVVG Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...
NEF_SIVVG Protein Nef (3'ORF) (Negative factor) (F-protein)
VIF_SIVVG Virion infectivity factor (Vif) (Q protein) (SOR protein)
REV_SIVVG Protein Rev (Regulator of expression of viral proteins)
TAT_SIVVG Protein Tat (Transactivating regulatory protein)
VPX_SIVVG Protein Vpx (Viral protein X) (X ORF protein)

7 entries

Feline immunodeficiency virus (strain San Diego) (FIV)

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POL_FIVSD Pol polyprotein [Cleaved into: Protease (EC 3.4.23.-) (Retropepsin); Reverse ...
GAG_FIVSD Gag polyprotein [Cleaved into: Matrix protein p15 (MA); Capsid protein p24 (CA); p1; Nucleocapsid ...
ENV_FIVSD Envelope glycoprotein gp150 (Env polyprotein) [Cleaved into: Surface protein (SU) (Glycoprotein 100) ...
REV_FIVSD Probable protein Rev (3'ORF) (ART/TRS) (Anti-repression transactivator) (ORF4) (ORFH) (Regulator of ...
VIF_FIVSD Virion infectivity factor
VPRL_FIVSD Probable Vpr-like protein (ORF2) (OrfA) (Protein Tat)
YOR3_FIVSD Uncharacterized protein ORF3 (ORFD)

7 entries

Human immunodeficiency virus type 1 group M subtype B (isolate LW123) (HIV-1)

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POL_HV1LW Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...

pdb 3LP3; 3TH9; 3VFA; 4I8W; 4I8Z; 4MC1; 4MC2; 4MC6; 4MC9; 4NYF; 4QGI; 5K14; 6Y9V; 6Y9W; 6Y9X; 6Y9Y; 6Y9Z; 9JA0

GAG_HV1LW Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...

pdb 1HVN; 1HVO; 1U57; 2ZNF

ENV_HV1LW Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...

pdb 2X7R; 2Z2T; 3AHA; 3CP1; 3CYO; 3GWO; 3H00; 3H01; 4I48; 5HFM; 6X58

NEF_HV1LW Protein Nef (3'ORF) (Negative factor) (F-protein) [Cleaved into: C-terminal core protein]

pdb 2NEF

VPU_HV1LW Protein Vpu (U ORF protein) (Viral protein U)

pdb 1PI7; 1PI8; 1PJE; 2GOF; 2GOH

VIF_HV1LW Truncated virion infectivity factor (Vif) (SOR protein) [Cleaved into: Truncated p17]
REV_HV1LW Protein Rev (ART/TRS) (Anti-repression transactivator) (Regulator of expression of viral proteins)

7 entries

Human immunodeficiency virus type 1 group M subtype G (isolate SE6165) (HIV-1)

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GAG_HV1SE Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...
POL_HV1SE Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...
TAT_HV1SE Protein Tat (Transactivating regulatory protein)
NEF_HV1SE Protein Nef (3'ORF) (Negative factor) (F-protein) [Cleaved into: C-terminal core protein]
VIF_HV1SE Virion infectivity factor (Vif) (SOR protein) [Cleaved into: p17; p7]
VPR_HV1SE Protein Vpr (R ORF protein) (Viral protein R)
REV_HV1SE Protein Rev (ART/TRS) (Anti-repression transactivator) (Regulator of expression of viral proteins)

7 entries

Ovine maedi visna related virus (strain South Africa) (SA-OMVV) (Ovine lentivirus)

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POL_OMVVS Pol polyprotein [Cleaved into: Protease (EC 3.4.23.-) (Retropepsin); Reverse ...
ENV_OMVVS Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein (Glycoprotein 135) ...
GAG_OMVVS Gag polyprotein [Cleaved into: Matrix protein p16; Capsid protein p25; Nucleocapsid protein p14]
REV_OMVVS Protein Rev
VPRL_OMVVS Probable Vpr-like protein (Protein S) (Protein Tat)
VIF_OMVVS Virion infectivity factor (Q protein)
VPW_OMVVS Putative uncharacterized protein W

6 entries

Human immunodeficiency virus type 1 group M subtype B (isolate HXB3) (HIV-1)

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ENV_HV1H3 Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...

pdb 1JAU; 1JAV; 8ELI

NEF_HV1H3 Protein Nef (3'ORF) (Negative factor) (F-protein) [Cleaved into: C-terminal core protein]
TAT_HV1H3 Protein Tat (Transactivating regulatory protein)

pdb 4OGR

REV_HV1H3 Protein Rev (ART/TRS) (Anti-repression transactivator) (Regulator of expression of viral proteins)

pdb 3LPH; 4PMI

VPU_HV1H3 Protein Vpu (U ORF protein) (Viral protein U)
VPR_HV1H3 Protein Vpr (R ORF protein) (Viral protein R)

6 entries

Human immunodeficiency virus type 1 group M subtype B (isolate SC) (HIV-1)

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NEF_HV1SC Protein Nef (3'ORF) (Negative factor) (F-protein) [Cleaved into: C-terminal core protein]
ENV_HV1SC Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...

pdb 2M8M; 2M8O; 3E6F

TAT_HV1SC Protein Tat (Transactivating regulatory protein)
REV_HV1SC Protein Rev (ART/TRS) (Anti-repression transactivator) (Regulator of expression of viral proteins)
VPU_HV1SC Protein Vpu (U ORF protein) (Viral protein U)
VPR_HV1SC Protein Vpr (R ORF protein) (Viral protein R)

6 entries

Maedi visna virus (strain 1514) (MVV) (Visna lentivirus)

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POL_VILV Gag-Pol polyprotein [Cleaved into: Matrix protein p16; Capsid protein p25; Nucleocapsid protein p14; ...
GAG_VILV Gag polyprotein [Cleaved into: Matrix protein p16; Capsid protein p25; Nucleocapsid protein p14]
ENV_VILV Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein (Glycoprotein 135) ...
REV_VILV Protein Rev
VPRL_VILV Probable Vpr-like protein (Protein S) (Protein Tat)
VIF_VILV Virion infectivity factor (Q protein)

6 entries

Maedi visna virus (strain KV1772) (MVV) (Visna lentivirus)

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POL_VILVK Gag-Pol polyprotein [Cleaved into: Matrix protein p16; Capsid protein p25; Nucleocapsid protein p14; ...

pdb 3HPG; 3HPH; 5LLJ; 5M0R; 5T3A; 7U32; 7Z1Z; 7ZPP

ENV_VILVK Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein (Glycoprotein 135) ...

pdb 1JEK

GAG_VILVK Gag polyprotein [Cleaved into: Matrix protein p16; Capsid protein p25; Nucleocapsid protein p14]
REV_VILVK Protein Rev
VPRL_VILVK Probable Vpr-like protein (Protein S) (Protein Tat)
VIF_VILVK Virion infectivity factor (Q protein)

pdb 7UPN

5 entries

Equine infectious anemia virus (isolate CL22) (EIAV)

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POL_EIAVC Pol polyprotein [Cleaved into: Protease (Retropepsin) (EC 3.4.23.-); Reverse ...

pdb 1FMB; 2FMB

ENV_EIAVC Envelope glycoprotein (Env polyprotein) [Cleaved into: Surface protein (SU) (Glycoprotein 90) ...
REV_EIAVC Protein Rev (3'-ORF protein)
TAT_EIAVC Protein Tat (E-Tat) (Transactivating regulatory protein) (eTat)

pdb 2PK2

GAG_EIAVC Gag polyprotein [Cleaved into: Matrix protein p15 (MA); Capsid protein p26 (CA); p1; Nucleocapsid ...

5 entries

Equine infectious anemia virus (strain Wyoming) (EIAV)

Select_allDeselect_all
POL_EIAVY Pol polyprotein [Cleaved into: Protease (Retropepsin) (EC 3.4.23.-); Reverse ...
ENV_EIAVY Envelope glycoprotein (Env polyprotein) [Cleaved into: Surface protein (SU) (Glycoprotein 90) ...
REV_EIAVY Protein Rev (3'-ORF protein)
GAG_EIAVY Gag polyprotein [Cleaved into: Matrix protein p15 (MA); Capsid protein p26 (CA); p1; Nucleocapsid ...

pdb 1EIA; 1HEK; 2BL6; 2EIA; 2K84; 2R03; 4ZUT; 4ZUU; 4ZUW

TAT_EIAVY Protein Tat (E-Tat) (Transactivating regulatory protein) (eTat)

pdb 2W2H

5 entries

Human immunodeficiency virus type 1 group M subtype B (isolate CDC-451) (HIV-1)

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ENV_HV1C4 Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...
GAG_HV1C4 Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...
TAT_HV1C4 Protein Tat (Transactivating regulatory protein)

pdb 9DE5

VPU_HV1C4 Protein Vpu (U ORF protein) (Viral protein U)
REV_HV1C4 Protein Rev (ART/TRS) (Anti-repression transactivator) (Regulator of expression of viral proteins)

5 entries

Human immunodeficiency virus type 1 group M subtype B (isolate NY5) (HIV-1)

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GAG_HV1N5 Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...

pdb 1GWP; 2C55; 2MGU; 3GV2; 4U0A; 4U0B; 4U0C; 4U0D; 4U0E; 4U0F; 4XFX; 4XFY; 4XFZ; 4XRO; 4XRQ; 5HGL; 5HGM; 5HGN; 5HGO; 5HGP; 5IRT; 5JPA; 5L93; 5O2U; 5TSV; 5TSX; 5UPW; 5W4O; 5W4P; 5W4Q; 6AXR; 6AXS; 6AXT; 6AXV; 6AXW; 6AXX; 6AXY; 6AY9; 6AYA; 6B2G; 6B2H; 6B2I; 6B2J; 6B2K; 6BHS; 6BHT; 6ECN; 6H09; 6MQA; 6MQO; 6MQP; 6OBH; 6OMT; 6PU1; 6R6Q; 6RWG; 6V2F; 6VKV; 6VWS; 6WAP; 6X63; 7E1J; 7JXR; 7JXS; 7M9F; 7MKC; 7MN0; 7N9U; 7N9V; 7OVQ; 7OVR; 7P3O; 7QDF; 7R7P; 7R7Q; 7RAO; 7RAR; 7RHM; 7RHN; 7RJ2; 7RJ4; 7T13; 7TBP; 7URN; 7URT; 8CKV; 8CKW; 8CKX; 8CKY; 8CKZ; 8CL0; 8CL1; 8CL2; 8CL3; 8CL4; 8EEP; 8EET; 8EJL; 8FIU; 8G6K; 8G6L; 8G6M; 8G6N; 8G6O; 8GDV; 8QUB; 8QUH; 8QUI; 8QUJ; 8QUK; 8QUL; 8QUW; 8QUX; 8QUY; 8QV1; 8QV4; 8QV9; 8QVA; 8TY6; 9D6D; 9D6E; 9D88; 9H1P

POL_HV1N5 Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...

pdb 1A43; 1A8O; 1AFV; 1AK4; 1AUM; 1B92; 1B9D; 1B9F; 1BAJ; 1BHL; 1BI4; 1BIS; 1BIU; 1BIZ; 1BL3; 1GWP; 1HIW; 1HYV; 1HYZ; 1ITG; 1K6Y; 1M9D; 1QS4; 1UPH; 1WJB; 1WJD; 2B4J; 2GOL; 2GON; 2H3F; 2H3I; 2H3Q; 2H3V; 2H3Z; 2HMX; 2HVP; 2ITG; 2JPR; 2JYG; 2JYL; 2LF4; 2LYA; 2LYB; 2M3Z; 2M8L; 2M8N; 2M8P; 2ONT; 2PWM; 2PWO; 2PXR; 2X2D; 2XDE; 2XV6; 2XXM; 3AV9; 3AVA; 3AVB; 3AVC; 3AVF; 3AVG; 3AVH; 3AVJ; 3AVK; 3AVL; 3AVM; 3AVN; 3DIK; 3DPH; 3DS0; 3DS1; 3DS2; 3DS3; 3DS4; 3DS5; 3DTJ; 3GV2; 3H47; 3H4E; 3L3U; 3L3V; 3LPT; 3LPU; 3LRY; 3MGE; 3NF6; 3NF7; 3NF8; 3NF9; 3NFA; 3P05; 3P0A; 3S85; 3WNE; 3WNF; 3WNG; 3WNH; 3ZCM; 3ZSO; 3ZSQ; 3ZSR; 3ZSV; 3ZSW; 3ZSX; 3ZSY; 3ZSZ; 3ZT0; 3ZT1; 3ZT2; 3ZT3; 3ZT4; 4AH9; 4AHR; 4AHS; 4AHT; 4AHU; 4AHV; 4CE9; 4CEA; 4CEB; 4CEC; 4CED; 4CEE; 4CEF; 4CEO; 4CEQ; 4CER; 4CES; 4CEZ; 4CF0; 4CF1; 4CF2; 4CF8; 4CF9; 4CFA; 4CFB; 4CFC; 4CFD; 4CGD; 4CGF; 4CGG; 4CGH; 4CGI; 4CGJ; 4CHN; 4CHO; 4CHP; 4CHQ; 4CHY; 4CHZ; 4CIE; 4CIF; 4CIG; 4CJ3; 4CJ4; 4CJ5; 4CJE; 4CJF; 4CJK; 4CJL; 4CJP; 4CJQ; 4CJR; 4CJS; 4CJT; 4CJU; 4CJV; 4CJW; 4CK1; 4CK2; 4CK3; 4COC; 4COP; 4DGA; 4DGE; 4DMN; 4E1M; 4E1N; 4E91; 4E92; 4GVM; 4GW6; 4ID1; 4IPY; 4JLH; 4JMU; 4LH4; 4LH5; 4LQW; 4NX4; 4O0J; 4O55; 4O5B; 4OVL; 4PHV; 4QNB; 4WYM; 4Y1C; 4Y1D; 4ZHR; 5HVP; 5JL4; 5KGW; 5KGX; 5KRS; 5KRT; 5TEO; 5U1C; 5VCK; 5VEA; 5VJ3; 5XN0; 5XN1; 5XN2; 6ES8; 6IK9; 6IKA; 6JCF; 6JCG; 6KDJ; 6KDK; 6KDM; 6KDN; 6KDO; 6LMI; 6LMQ; 6MCR; 6MCS; 6OOS; 6OOT; 6OOU; 6OPW; 6OPY; 6OPZ; 6OXO; 6OXP; 6OXQ; 6OXR; 6OXS; 6OXT; 6OXU; 6OXV; 6OXW; 6OXX; 6OXY; 6OXZ; 6OY0; 6OY1; 6OY2; 6OYD; 6OYR; 6PJB; 6PJC; 6PJD; 6PJE; 6PJF; 6PJG; 6PJH; 6PJI; 6PJK; 6PJL; 6PJM; 6PJN; 6PJO; 6PUT; 6PUW; 6PUY; 6PUZ; 6T6E; 6U8Q; 6UM8; 6V3K; 6VDK; 6VQS; 6VRG; 6VX2; 6W0U; 6W42; 6W6T; 7D83; 7DBM; 7DBN; 7KE0; 7L1P; 7L23; 7LDY; 7LDZ; 7LE0; 7LE1; 7LE2; 7LE3; 7LE4; 7LE5; 7LE6; 7LE7; 7LE8; 7LE9; 7LEA; 7LEB; 7LEC; 7LED; 7LEE; 7LEF; 7LEG; 7LEH; 7LEI; 7LQP; 7RQ0; 7SIA; 7T9H; 7T9O; 7U2U; 7UE1; 7UOQ; 7WBS; 7WCE; 7WCQ; 7YF6; 7ZUD; 8A1P; 8A1Q; 8BUV; 8BV2; 8CBR; 8CBS; 8CBT; 8CBU; 8CBV; 8CT5; 8CT7; 8D3S; 8F22; 8FN7; 8FND; 8FNG; 8FNH; 8FNJ; 8FNL; 8FNM; 8FNN; 8FNO; 8FNP; 8FNQ; 8S9Q; 8T52; 8T5A; 8TOV; 8TQP; 8V23; 8W09; 8W2R; 8W34; 8WF7; 8X1Z; 8X20; 8X21; 8X22; 8ZH4; 8ZHA; 9EK1; 9EK2; 9EK3; 9HVP

VIF_HV1N5 Virion infectivity factor (Vif) (SOR protein) [Cleaved into: p17; p7]

pdb 2MA9; 3DCG; 4N9F; 6NIL; 8E40; 8FVI; 8FVJ; 8H0I; 8J62; 8SZK

VPR_HV1N5 Protein Vpr (R ORF protein) (Viral protein R)

pdb 1BDE; 1DSJ; 1DSK; 1KZS; 1KZT; 1KZV; 5JK7; 6XQI; 6XQJ; 7V7C

ENV_HV1N5 Truncated surface protein (SU) (Glycoprotein 120) (gp120)

pdb 3MLR; 6DB5

5 entries

Human immunodeficiency virus type 1 group M subtype B (isolate PCV12) (HIV-1)

Select_allDeselect_all
NEF_HV112 Protein Nef (3'ORF) (Negative factor) (F-protein) [Cleaved into: C-terminal core protein]

pdb 1QA4; 1QA5; 1ZEC

TAT_HV112 Protein Tat (Transactivating regulatory protein)

pdb 5SVZ

REV_HV112 Protein Rev (ART/TRS) (Anti-repression transactivator) (Regulator of expression of viral proteins)
VIF_HV112 Virion infectivity factor (Vif) (SOR protein) [Cleaved into: p17; p7]
VPR_HV112 Protein Vpr (R ORF protein) (Viral protein R)

5 entries

Human immunodeficiency virus type 1 group M subtype B (isolate SF162) (HIV-1)

Select_allDeselect_all
NEF_HV1S1 Protein Nef (3'ORF) (Negative factor) (F-protein) [Cleaved into: C-terminal core protein]
ENV_HV1S1 Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...

pdb 8FAD

TAT_HV1S1 Protein Tat (Transactivating regulatory protein)
VPU_HV1S1 Protein Vpu (U ORF protein) (Viral protein U)

pdb 1VPU; 2K7Y; 4P6Z

REV_HV1S1 Protein Rev (ART/TRS) (Anti-repression transactivator) (Regulator of expression of viral proteins)

5 entries

Human immunodeficiency virus type 1 group M subtype B (isolate SF33) (HIV-1)

Select_allDeselect_all
NEF_HV1S3 Protein Nef (3'ORF) (Negative factor) (F-protein) [Cleaved into: C-terminal core protein]
ENV_HV1S3 Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...

pdb 1MEQ

TAT_HV1S3 Protein Tat (Transactivating regulatory protein)
VPR_HV1S3 Protein Vpr (R ORF protein) (Viral protein R)
REV_HV1S3 Protein Rev (ART/TRS) (Anti-repression transactivator) (Regulator of expression of viral proteins)

5 entries

Human immunodeficiency virus type 1 group M subtype D (isolate Z6) (HIV-1)

Select_allDeselect_all
ENV_HV1Z6 Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...

pdb 1TJH; 1TJI; 3F4Y; 3F50; 3G7A; 3MOA; 3MOB; 3MOD; 4I2L

NEF_HV1Z6 Protein Nef (3'ORF) (Negative factor) (F-protein) [Cleaved into: C-terminal core protein]

pdb 1QVO

TAT_HV1Z6 Protein Tat (Transactivating regulatory protein)
VIF_HV1Z6 Virion infectivity factor (Vif) (SOR protein) [Cleaved into: p17; p7]
REV_HV1Z6 Protein Rev (ART/TRS) (Anti-repression transactivator) (Regulator of expression of viral proteins)

pdb 1RPV

5 entries

Maedi visna virus (strain 1514 / clone LV1-1KS1) (MVV) (Visna lentivirus)

Select_allDeselect_all
POL_VILV1 Gag-Pol polyprotein [Cleaved into: Matrix protein p16; Capsid protein p25; Nucleocapsid protein p14; ...
ENV_VILV1 Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein (Glycoprotein 135) ...
GAG_VILV1 Gag polyprotein [Cleaved into: Matrix protein p16; Capsid protein p25; Nucleocapsid protein p14]
VPRL_VILV1 Probable Vpr-like protein (Protein S) (Protein Tat)
VIF_VILV1 Virion infectivity factor (Q protein)

5 entries

Maedi visna virus (strain 1514 / clone LV1-1KS2) (MVV) (Visna lentivirus)

Select_allDeselect_all
POL_VILV2 Gag-Pol polyprotein [Cleaved into: Matrix protein p16; Capsid protein p25; Nucleocapsid protein p14; ...
ENV_VILV2 Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein (Glycoprotein 135) ...
GAG_VILV2 Gag polyprotein [Cleaved into: Matrix protein p16; Capsid protein p25; Nucleocapsid protein p14]
VPRL_VILV2 Probable Vpr-like protein (Protein S) (Protein Tat)
VIF_VILV2 Virion infectivity factor (Q protein)

5 entries

Simian immunodeficiency virus (isolate K78) (SIV-mac) (Simian immunodeficiency virus rhesus monkey)

Select_allDeselect_all
ENV_SIVML Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...
NEF_SIVML Protein Nef (3'ORF) (Negative factor) (F-protein)
TAT_SIVML Protein Tat (Transactivating regulatory protein)
VPR_SIVML Protein Vpr (R ORF protein) (Viral protein R)
REV_SIVML Protein Rev (Regulator of expression of viral proteins)

4 entries

Equine infectious anemia virus (isolate 1369) (EIAV)

Select_allDeselect_all
POL_EIAV9 Pol polyprotein [Cleaved into: Protease (Retropepsin) (EC 3.4.23.-); Reverse ...

pdb 1DUC; 1DUN

ENV_EIAV9 Envelope glycoprotein (Env polyprotein) [Cleaved into: Surface protein (SU) (Glycoprotein 90) ...
GAG_EIAV9 Gag polyprotein [Cleaved into: Matrix protein p15 (MA); Capsid protein p26 (CA); p1; Nucleocapsid ...

pdb 6T61; 6T63; 6T64

REV_EIAV9 Protein Rev (3'-ORF protein)

pdb 4ZUS

4 entries

Feline immunodeficiency virus (isolate TM2) (FIV)

Select_allDeselect_all
POL_FIVT2 Pol polyprotein [Cleaved into: Protease (EC 3.4.23.-) (Retropepsin); Reverse ...
GAG_FIVT2 Gag polyprotein [Cleaved into: Matrix protein p15 (MA); Capsid protein p24 (CA); p1; Nucleocapsid ...
ENV_FIVT2 Envelope glycoprotein gp150 (Env polyprotein) [Cleaved into: Surface protein (SU) (Glycoprotein 100) ...
VIF_FIVT2 Virion infectivity factor

4 entries

Human immunodeficiency virus type 1 group M subtype B (isolate BH5) (HIV-1)

Select_allDeselect_all
POL_HV1B5 Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...

pdb 1BDL; 1BDQ; 1BDR; 1FEJ; 1FF0; 1FFF; 1FFI; 1FG6; 1FG8; 1FGC; 1G2K; 1HPV; 1HVJ; 1HVS; 1K1T; 1K1U; 1K2B; 1K2C; 1ODX; 1Q9P; 1TCX; 1WJE; 1WJF; 2AOC; 2AOD; 2AOE; 2AOF; 2AOG; 2AOH; 2AOI; 2AOJ; 2AVM; 2AVO; 2AVQ; 2AVS; 2AVV; 2BPV; 2BPW; 2BPX; 2BPY; 2BPZ; 2F80; 2F81; 2F8G; 2NMY; 2NMZ; 2NNK; 2NNP; 2R38; 2R3T; 2R3W; 2Z54; 3B7V; 3B80; 3BC4; 3BGB; 3BGC; 3CYW; 3CYX; 3D1X; 3D1Y; 3D1Z; 3D20; 3OXC; 6B36; 6B38; 6B3C; 6B3F; 6B3G; 6B3H

GAG_HV1B5 Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...
VIF_HV1B5 Virion infectivity factor (Vif) (SOR protein) [Cleaved into: p17; p7]
VPR_HV1B5 Protein Vpr (R ORF protein) (Viral protein R)

3 entries

Human immunodeficiency virus type 1 group M subtype B (isolate BH8) (HIV-1)

Select_allDeselect_all
ENV_HV1B8 Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...

pdb 1DDH; 1HHG; 1QO3; 1SZT; 6TVU

NEF_HV1B8 Protein Nef (3'ORF) (Negative factor) (F-protein) [Cleaved into: C-terminal core protein]
VPU_HV1B8 Protein Vpu (U ORF protein) (Viral protein U)

3 entries

Human immunodeficiency virus type 1 group M subtype B (isolate BRVA) (HIV-1)

Select_allDeselect_all
NEF_HV1BN Protein Nef (3'ORF) (Negative factor) (F-protein) [Cleaved into: C-terminal core protein]
ENV_HV1BN Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...

pdb 1IM7; 1J8N; 1J8Z; 1J9V; 1JAA; 1JAR; 1JC8; 1JCP

VPU_HV1BN Protein Vpu (U ORF protein) (Viral protein U)

3 entries

Human immunodeficiency virus type 1 group M subtype B (isolate JH32) (HIV-1)

Select_allDeselect_all
ENV_HV1J3 Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...

pdb 8TDX

GAG_HV1J3 Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...
VPU_HV1J3 Protein Vpu (U ORF protein) (Viral protein U)

2 entries

Caprine arthritis encephalitis virus (CAEV)

Select_allDeselect_all
REV_CAEV Protein Rev (Rev-C)
ORFX_CAEV Uncharacterized ORF-X protein (Protein UPX)

2 entries

Caprine arthritis encephalitis virus (strain 63) (CAEV-63)

Select_allDeselect_all
ENV_CAEVG Envelope glycoprotein (Env polyprotein) [Cleaved into: Surface protein (Glycoprotein 135) (gp135); ...
VPRL_CAEVG Probable Vpr-like protein (Protein S) (Protein Tat)

2 entries

Feline immunodeficiency virus (isolate Wo) (FIV)

Select_allDeselect_all
ENV_FIVWO Envelope glycoprotein gp150 (Env polyprotein) [Cleaved into: Surface protein (SU) (Glycoprotein 100) ...
GAG_FIVWO Gag polyprotein [Cleaved into: Matrix protein p15 (MA); Capsid protein p24 (CA); p1; Nucleocapsid ...

2 entries

Human immunodeficiency virus type 1 group M subtype A (isolate Z321) (HIV-1)

Select_allDeselect_all
NEF_HV1ZH Protein Nef (3'ORF) (Negative factor) (F-protein) [Cleaved into: C-terminal core protein]
ENV_HV1ZH Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...

2 entries

Simian immunodeficiency virus (isolate African mandrill) (SIV-mnd)

Select_allDeselect_all
REV_SIVAM Protein Rev (Regulator of expression of viral proteins)
TAT_SIVAM Protein Tat (Transactivating regulatory protein)

2 entries

Simian immunodeficiency virus (isolate K6W) (SIV-mac) (Simian immunodeficiency virus rhesus monkey)

Select_allDeselect_all
ENV_SIVMK Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...

pdb 2BF1

VPX_SIVMK Protein Vpx (Viral protein X) (X ORF protein)

1 entry

Equine infectious anemia virus (isolate P3.2-1) (EIAV)

ENV_EIAV1 Envelope glycoprotein (Env polyprotein) [Cleaved into: Surface protein (SU) (Glycoprotein 90) ...

1 entry

Equine infectious anemia virus (isolate P3.2-2) (EIAV)

ENV_EIAV2 Envelope glycoprotein (Env polyprotein) [Cleaved into: Surface protein (SU) (Glycoprotein 90) ...

1 entry

Equine infectious anemia virus (isolate P3.2-3) (EIAV)

ENV_EIAV3 Envelope glycoprotein (Env polyprotein) [Cleaved into: Surface protein (SU) (Glycoprotein 90) ...

1 entry

Equine infectious anemia virus (isolate P3.2-5) (EIAV)

ENV_EIAV5 Envelope glycoprotein (Env polyprotein) [Cleaved into: Surface protein (SU) (Glycoprotein 90) ...

1 entry

Equine infectious anemia virus (strain WSU5) (EIAV)

ENV_EIAVW Envelope glycoprotein (Env polyprotein) [Cleaved into: Surface protein (SU) (Glycoprotein 90) ...

pdb 4ZUV; 6LF8; 6LF9

1 entry

Feline immunodeficiency virus (strain UK2) (FIV)

ENV_FIVU2 Envelope glycoprotein gp150 (Env polyprotein) [Cleaved into: Surface protein (SU) (Glycoprotein 100) ...

1 entry

Feline immunodeficiency virus (strain UK8) (FIV)

ENV_FIVU8 Envelope glycoprotein gp150 (Env polyprotein) [Cleaved into: Surface protein (SU) (Glycoprotein 100) ...

1 entry

Feline immunodeficiency virus (strain UT-113) (FIV)

ENV_FIVU1 Envelope glycoprotein gp150 (Env polyprotein) [Cleaved into: Surface protein (SU) (Glycoprotein 100) ...

1 entry

Human immunodeficiency virus type 1 (HIV-1)

VPU_HV1 Protein Vpu (U ORF protein) (Viral protein U)

1 entry

Human immunodeficiency virus type 1 group M subtype B (isolate KB-1/ETR) (HIV-1)

ENV_HV1KB Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...

1 entry

Human immunodeficiency virus type 1 group M subtype B (isolate MFA) (HIV-1)

ENV_HV1MF Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...

pdb 2NXZ; 2NY0; 2NY2; 2NY4; 2NY5; 2PJV; 3ECB

1 entry

Human immunodeficiency virus type 1 group M subtype B (isolate N1T-A) (HIV-1)

VIF_HV1NA Virion infectivity factor (Vif) (SOR protein) [Cleaved into: p17; p7]

1 entry

Human immunodeficiency virus type 1 group M subtype B (isolate WMJ1) (HIV-1)

ENV_HV1W1 Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...

pdb 1LB0; 1LCX

1 entry

Human immunodeficiency virus type 1 group M subtype B (isolate WMJ22) (HIV-1)

ENV_HV1W2 Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...

pdb 2FX7; 2FX8; 2FX9; 4WY7; 6VPX

1 entry

Human immunodeficiency virus type 1 group M subtype D (isolate Z84) (HIV-1)

ENV_HV1Z8 Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...

1 entry

Human immunodeficiency virus type 1 group M subtype U (isolate Z3) (HIV-1)

ENV_HV1Z3 Truncated surface protein (SU) (Glycoprotein 120) (gp120)

1 entry

Human immunodeficiency virus type 2 subtype A (isolate ST/24.1C#2) (HIV-2)

ENV_HV2S2 Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) ...

1 entry

Simian immunodeficiency virus (isolate 1A11) (SIV-mac) (Simian immunodeficiency virus rhesus monkey)

NEF_SIVMA Protein Nef (3'ORF) (Negative factor) (F-protein)

pdb 3IK5

1 entry

Simian immunodeficiency virus (isolate STM) (SIV-mac) (Simian immunodeficiency virus rhesus monkey)

GAG_SIVMS Gag polyprotein (Pr55Gag) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer ...
These structures were created with the help of Colabfold by Jason Nomburg, Nathan Price and Jennifer Doudna (ModelArchive).

Bovine immunodeficiency virus (strain R29) taxid:417296

Protein ModelArchive
Envelope glycoprotein (Env polyprotein) ma-jd-viral-62769
Gag polyprotein (Pr53Gag) ma-jd-viral-67489
Protein Tat (S ORF) (Transactivating regulatory protein) (bTat) ma-jd-viral-35954
Virion infectivity factor (Q protein) ma-jd-viral-32907

Feline immunodeficiency virus (isolate Petaluma) taxid:11674

Protein ModelArchive
Env protein ma-jd-viral-66427
Gag polyprotein ma-jd-viral-48076
Probable Vpr-like protein (ORF2) (OrfA) (Protein Tat) ma-jd-viral-40763
Virion infectivity factor ma-jd-viral-29562

Human immunodeficiency virus 2 taxid:11709

Protein ModelArchive
Envelope glycoprotein gp160 ma-jd-viral-61436
Gag polyprotein ma-jd-viral-67486
Protein Nef ma-jd-viral-45700
Virion infectivity factor ma-jd-viral-32082
Vpx protein ma-jd-viral-54763

Human immunodeficiency virus type 1 taxid:11676

Protein ModelArchive
Virion infectivity factor (Vif) (SOR protein) ma-jd-viral-32085

Human immunodeficiency virus type 1 group M subtype B (isolate BH10) taxid:11678

Protein ModelArchive
Virion infectivity factor (Vif) (SOR protein) ma-jd-viral-32085

Human immunodeficiency virus type 1 group M subtype B (isolate BRU/LAI) taxid:11686

Protein ModelArchive
Virion infectivity factor (Vif) (SOR protein) ma-jd-viral-32085

Human immunodeficiency virus type 1 group M subtype B (isolate HXB2) taxid:11706

Protein ModelArchive
Gag-Pol polyprotein (Pr160Gag-Pol) ma-jd-viral-67488
Protein Nef (3'ORF) (Negative factor) (F-protein) ma-jd-viral-45697
Protein Rev (ART/TRS) (Anti-repression transactivator) (Regulator of expression of viral... ma-jd-viral-50984
Protein Rev (ART/TRS) (Anti-repression transactivator) (Regulator of expression of viral... ma-jd-viral-50984
Protein Tat (Transactivating regulatory protein) ma-jd-viral-30816
Protein Vpu (U ORF protein) (Viral protein U) ma-jd-viral-64674
Virion infectivity factor (Vif) (SOR protein) ma-jd-viral-32085
Virion infectivity factor (Vif) (SOR protein) ma-jd-viral-32085

Human immunodeficiency virus type 1 group M subtype B (isolate PCV12) taxid:11679

Protein ModelArchive
Virion infectivity factor (Vif) (SOR protein) ma-jd-viral-32085

Human immunodeficiency virus type 2 subtype A (isolate BEN) taxid:11714

Protein ModelArchive
Envelope glycoprotein gp160 (Env polyprotein) ma-jd-viral-61436
Gag polyprotein (Pr55Gag) ma-jd-viral-67486
Protein Nef (3'ORF) (Negative factor) (F-protein) ma-jd-viral-45700
Protein Rev (Regulator of expression of viral proteins) ma-jd-viral-35017
Protein Tat (Transactivating regulatory protein) ma-jd-viral-48226
Protein Vpr (R ORF protein) (Viral protein R) ma-jd-viral-54762
Protein Vpx (Viral protein X) (X ORF protein) ma-jd-viral-54763
Virion infectivity factor (Vif) (Q protein) (SOR protein) ma-jd-viral-32082

Simian immunodeficiency virus taxid:11723

Protein ModelArchive
Gag polyprotein ma-jd-viral-67491

Simian immunodeficiency virus SIV-mnd 2 taxid:159122

Protein ModelArchive
Envelope glycoprotein gp160 ma-jd-viral-61438
Gag polyprotein ma-jd-viral-67490
Protein Nef ma-jd-viral-45698
Protein Tat ma-jd-viral-53779
Protein Vpr (Viral protein R) ma-jd-viral-54764
Protein Vpr (Viral protein R) ma-jd-viral-54765
Virion infectivity factor ma-jd-viral-32083

Simian immunodeficiency virus agm.grivet (isolate AGM gr-1) taxid:31684

Protein ModelArchive
Envelope glycoprotein gp160 (Env polyprotein) ma-jd-viral-61437
Gag polyprotein (Pr55Gag) ma-jd-viral-67491
Protein Nef (3'ORF) (Negative factor) (F-protein) ma-jd-viral-45699
Protein Vpx (Viral protein X) (X ORF protein) ma-jd-viral-54767
Virion infectivity factor (Vif) (Q protein) (SOR protein) ma-jd-viral-32084