VIRION
Non-enveloped, spherical, about 30 nm in diameter, pseudo T=3 icosahedral capsid surrounding the naked RNA genome. The capsid consists of a densely-packed icosahedral arrangement of 60 protomers, each consisting of 4 polypeptides, VP1, VP2, VP3 and VP4. VP4 is located on the internal side of the capsid.
GENOME
Monopartite, linear ssRNA(+) genome of 8.8 kb, polyadenylated, composed of a single ORF encoding a polyprotein. Viral genomic RNA has a viral protein (VPg) at its 5' end instead of a methylated nucleotide cap structure. The long UTR at the 5' end contains a type II internal ribosome entry site (IRES). The P1 region encodes the structural polypeptides. The P2 and P3 regions encode the nonstructural proteins associated with replication. Encodes a leader protease (that cleaves at the L/VP4 junction) in addition to the 3C protease. The shorter 3' UTR is important in (-)strand synthesis.
GENE EXPRESSION
The virion RNA is infectious and serves as both the genome and viral messenger RNA. The IRES allows direct translation of the polyprotein. The polyprotein is initially processed by the viral proteases into three precursor proteins, P1, P2, and P3. Precursor P1 is then proteolytically cleaved to yield the structural proteins. Precursors P2 and P3 are processed into replicase, VPg, and a number of proteins that modify the host cell, ultimately leading to cell lysis.
Ribosomal skipping is used at the junction of the 2A and downstream sequence.
ENZYMES
- RNA-dependent RNA polymerase [RdRp]
- VPG-type capping [VPg P08617]
- NTPase-helicase [2C]
- Polyprotein major protease (Peptidase C3) [3Cpro]
REPLICATION
CYTOPLASMIC
- Attachement of the virus to host receptors mediates endocytosis of the virus into the host cell.
- The capsid undergoes a conformational change and releases VP4 that opens a pore in the host endosomal membrane and the viral genomic RNA penetrates into the host cell cytoplasm.
- VPg is removed from the viral RNA, which is then translated into a processed polyprotein.
- Replication occurs in viral factories made of membrane vesicles derived from the ER. A dsRNA genome is synthesized from the genomic ssRNA(+).
- The dsRNA genome is transcribed/replicated thereby providing viral mRNAs/new ssRNA(+) genomes.
- New genomic RNA is believed to be packaged into preassembled procapsids.
- Cell lysis and virus release.
- Maturation of provirions by an unknown host protease.