Viral genome integration (kw:KW-1179)

Many viruses are able to insert their genetic material into host chromosomes. Three kind of integration exist:

Mandatory integration

Viruses for which this is an obligatory event during viral replication. This is the cases for the retroviridae, pseudoviridae, metaviridae, some myoviridae and siphoviridae. Integration of the viral DNA results in permanent insertion of the viral genome into the host chromosomal DNA, referred as a provirus in the case of retroviruses or prophage in the case of prokaryotic viruses.

Occasional integration

This kind of integration is not necessary for virus replication, but confers some advantages to the host/virus couple. It can facilitate long term asymptomatic infection of cells (latency),and also provide an advantage to the host cell. Many bacterial toxines are carried out by prophages for example.

Endogenous viral elements (EVE)

Viruses integrated long time ago and "fossilized" into a host genome, through a rare and sometimes accidental process. There are two kinds of endogenous viruses: endogenous retroviruses, and rare RNA virus integration.

Endogenous retro-viruses: Integrated viral genome can remain latent and be passively replicated along with the host genome and passed on to the cell's offspring. Host's environmental condition changes can however reactivate the virus leading to viral transcription and production of new infectious viruses (productive infection).
Retrovirus genomes that become integrated in the germline are referred as endogenous retroviruses (ERV) to distinguish them from horizontally transmitted, not passed on to host progeny, termed "exogenous" retroviruses. Hepadnaviridae have ben found also integrated inhost genome, notably in plants

Endogenous ssDNA viruses: SsDNA viruses like circoviridae which don't encode for an integrase have been found integrated in many genomes. It can happen also in plants: Geminivirus genome have been found in the tobacco genome.

Rare RNA virus integration:dsRNA, ssRNA(+) and ssRNA(-) viruses do not get reverse transcribed and are unable to integrate in host genome. Still Arenavirus reverse-transcribed genome has been detected in mice. Also Bornaviridae , filoviridae and Totiviridae sequences have been found integrated into several mammalian genome, and Rhabdoviridae in insect genomes indicating tat this event can occur although it's very rare.

Viral molecular biology Virion
Virus entry
Virus latency
Transcription and replication
Host-virus interactions
Virus exit

Links Uniprot Keyword: KW-1179
GO ontology: GO:0075713

Virus: Mandatory integration Retroviridae

Myoviridae, Mulike viruses
Bacteriophage Mu

Siphoviridae, D3112like viruses
Pseudomonas bacteriophage D3112

Siphoviridae,
Pseudomonas bacteriophage B3

Virus: occasional integration Parvoviridae , Dependovirus
Adeno-associated virus type 2

Siphoviridae , Lambda-like viruses
Enteroacteriophage lambda

Hepadnaviridae
Hepatitis B virus

Herpesviridae, Roseolovirus
Human herpesvirus 6A

Papillomaviridae

Polyomaviridae

Phycodnaviridae
Ectocarpus siliculosus virus 1 and Feldmannia sp. virus 158

Virus: rare integration Arenaviridae, Arenavirus
Lymphocytic choriomeningitis virus

Bornaviridae, Bornavirus
Borna disease virus

Filoviridae

Rhabdoviridae

Totiviridae, Totivirus

Geminiviridae

Matching UniProtKB/Swiss-Prot entries

(all links/actions below point to uniprot.org website)

136 entries grouped by strain

reorder by protein

1 entry

Acholeplasma phage L2 (Bacteriophage L2) reference strain

1 entry

Acidianus two-tailed virus (ATV) reference strain

1 entry

Avian leukosis virus subgroup A (isolate RSA) (ALV-A RSA) reference strain

1 entry

Caprine arthritis encephalitis virus (strain Cork) (CAEV-Co) reference strain

1 entry

Enterobacteria phage P4 (Bacteriophage P4) reference strain

1 entry

Escherichia phage 186 (Bacteriophage 186) reference strain

1 entry

Escherichia phage P2 (Bacteriophage P2) reference strain

1 entry

Escherichia phage lambda (Bacteriophage lambda) reference strain

1 entry

Feline foamy virus (FFV) (Feline syncytial virus) reference strain

1 entry

Feline immunodeficiency virus (isolate Petaluma) (FIV) reference strain

1 entry

Frog virus 3 (isolate Goorha) (FV-3) reference strain

1 entry

Haemophilus phage HP1 (strain HP1c1) (Bacteriophage HP1) reference strain

1 entry

Human T-cell leukemia virus 1 (isolate Caribbea HS-35 subtype A) (HTLV-1) reference strain

1 entry

Human T-cell leukemia virus 1 (strain Japan ATK-1 subtype A) (HTLV-1) reference strain

1 entry

Human T-cell leukemia virus 2 (HTLV-2) reference strain

1 entry

Human T-cell leukemia virus 3 (strain 2026ND) (HTLV-3) reference strain

1 entry

Human immunodeficiency virus type 1 group M subtype A (isolate MAL) (HIV-1) reference strain

1 entry

Human immunodeficiency virus type 1 group M subtype A (isolate U455) (HIV-1) reference strain

1 entry

Human immunodeficiency virus type 1 group M subtype B (isolate ARV2/SF2) (HIV-1) reference strain

POL_HV1A2 Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...

1AID; 1B6J; 1B6K; 1B6L; 1B6M; 1B6P; 1CPI; 1D4K; 1D4L; 1F7A; 1KJ4; 1KJ7; 1KJF; 1KJG; 1KJH; 1KZK; 1MT7; 1MT8; 1MT9; 1MTB; 1MTR; 1N49; 1T3R; 1TSQ; 1TSU; 1YTG; 1YTH; 1Z1H; 1Z1R; 2AID; 2F3K; 2FGU; 2FGV; 2FNS; 2FNT; 2J9J; 2J9K; 2JE4; 2NXD; 2NXL; 2NXM; 2Q3K; 2QHY; 2QHZ; 2QI0; 2QI1; 2QI3; 2QI4; 2QI5; 2QI6; 2QI7; 3AID; 3BXR; 3BXS; 3EKP; 3EKQ; 3EKT; 3EKV; 3EKW; 3EKX; 3EKY; 3EL0; 3EL1; 3EL4; 3EL5; 3EL9; 3EM3; 3EM4; 3EM6; 3FSM; 3GI0; 3GI4; 3GI5; 3GI6; 3HAU; 3HAW; 3HBO; 3HDK; 3HLO; 3HVP; 3HZC; 3I2L; 3I7E; 3IAW; 3KA2; 3LZV; 3MXD; 3MXE; 3NWQ; 3NWX; 3NXN; 3NYG; 3O9F; 3O9G; 3O9H; 3O9I; 3OXV; 3OXW; 3OXX; 3OY4; 3R4B; 4EP2; 4EP3; 4EPJ; 4EQ0; 4EQJ; 4F73; 4F74; 4F75; 4F76; 4HVP; 4OBD; 4OBF; 4OBG; 4OBH; 4OBJ; 4OBK; 4QJ2; 4QJ6; 4QJ7; 4QJ8; 4QJ9; 4QJA; 7HVP; 8HVP

1 entry

Human immunodeficiency virus type 1 group M subtype B (isolate BRU/LAI) (HIV-1) reference strain

POL_HV1BR Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...

1A8G; 1A8K; 1A94; 1AAQ; 1D4S; 1D4Y; 1DAZ; 1DIF; 1FQX; 1HHP; 1HNI; 1HPO; 1HPX; 1HSG; 1HVL; 1IIQ; 1IZI; 1LZQ; 1M0B; 1MRW; 1MRX; 1MSM; 1MSN; 1NH0; 1RL8; 1SDT; 1SDU; 1SDV; 1SGU; 1SH9; 1SP5; 1U8G; 1UPJ; 1XL2; 1XL5; 1Z8C; 1ZBG; 1ZJ7; 1ZLF; 1ZPK; 1ZTZ; 2A1E; 2AZ8; 2AZ9; 2AZB; 2AZC; 2B7Z; 2BB9; 2FDE; 2HB2; 2HB4; 2HC0; 2HND; 2HNY; 2IEN; 2O4K; 2O4L; 2O4N; 2O4P; 2O4S; 2P3B; 2PK5; 2PK6; 2PQZ; 2PWC; 2PWR; 2PYM; 2PYN; 2Q63; 2Q64; 2QAK; 2QCI; 2QD6; 2QD7; 2QD8; 2QHC; 2QNN; 2QNP; 2QNQ; 2R43; 2UPJ; 2Z4O; 2ZGA; 2ZYE; 3A2O; 3BHE; 3BVA; 3BVB; 3CKT; 3DJK; 3DK1; 3FX5; 3GGU; 3H5B; 3I6O; 3I8W; 3JVW; 3JVY; 3JW2; 3KDB; 3KDC; 3KDD; 3NDU; 3NDW; 3NDX; 3NLS; 3PWM; 3PWR; 3QBF; 3QIH; 3QN8; 3QP0; 3QPJ; 3QRM; 3QRO; 3QRS; 3ST5; 3T11; 3T3C; 3TOF; 3TOG; 3TOH; 3TTP; 3U7S; 3UCB; 3UF3; 3UFN; 3UHL; 3VF5; 3VF7; 3VFB; 4DFG; 4FAF; 4FE6; 4FL8; 4FLG; 4FM6; 4GB2; 4HDB; 4HDF; 4HDP; 4HE9; 4HEG; 4HLA; 4J54; 4J55; 4J5J; 4JEC; 4LL3; 5E5K; 5YOK; 6BSH; 6P9A; 6P9B; 6UWB; 6UWC; 6VCE; 6VLM; 6VOD; 6VOE; 7DZM; 7DZN; 7M9G; 7M9H; 7M9I; 7M9J; 7M9K; 7M9L; 7M9M; 7M9N; 7M9O; 7M9P; 7M9Q; 7M9R; 7M9S; 7M9T; 7M9U; 7M9V; 7M9W; 7M9X; 7M9Z; 7MA0; 7MA1; 7MA2; 7MA3; 7MA4; 7MA5; 7MA6; 7MA7; 7MA8; 7MA9; 7MAA; 7MAB; 7MAC; 7MAD; 7MAE; 7MAF; 7MAG; 7MAH; 7MAI; 7MAJ; 7MAK; 7MAL; 7MAN; 7MAO; 7MAP; 7MAQ; 7MAR; 7MAS; 7N6T; 7N6V; 7N6X; 7TO5; 7TO6; 7UPJ; 8DCH; 8DCI; 8FUI; 8FUJ; 8VB1

1 entry

Human immunodeficiency virus type 1 group M subtype B (isolate HXB2) (HIV-1) reference strain

POL_HV1H2 Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...

1A30; 1BV7; 1BV9; 1BVE; 1BVG; 1BWA; 1BWB; 1C0T; 1C0U; 1C1B; 1C1C; 1DMP; 1DTQ; 1DTT; 1E6J; 1EP4; 1ESK; 1EX4; 1EXQ; 1FB7; 1FK9; 1FKO; 1FKP; 1G6L; 1HIV; 1HVH; 1HVR; 1HWR; 1HXB; 1JKH; 1JLA; 1JLB; 1JLC; 1JLE; 1JLF; 1JLG; 1JLQ; 1KLM; 1LV1; 1LW0; 1LW2; 1LWC; 1LWE; 1LWF; 1NCP; 1O1W; 1ODW; 1ODY; 1QBR; 1QBS; 1QBT; 1QBU; 1REV; 1RT1; 1RT2; 1RT3; 1RT4; 1RT5; 1RT6; 1RT7; 1RTD; 1RTH; 1RTI; 1RTJ; 1S1T; 1S1U; 1S1V; 1S1W; 1S1X; 1T05; 1TAM; 1TKT; 1TKX; 1TKZ; 1TL1; 1TL3; 1VRT; 1VRU; 2HND; 2HNY; 2HNZ; 2KOD; 2NPH; 2OPP; 2OPQ; 2OPR; 2OPS; 2RF2; 2RKI; 2WHH; 2WOM; 2WON; 2YNF; 2YNG; 2YNH; 2YNI; 3AO2; 3C6T; 3C6U; 3DI6; 3DLE; 3DLG; 3DM2; 3DMJ; 3DOK; 3DOL; 3DOX; 3DRP; 3DRR; 3DRS; 3DYA; 3E01; 3FFI; 3I0R; 3I0S; 3KJV; 3KK1; 3KK2; 3KK3; 3KT2; 3KT5; 3LAK; 3LAL; 3LAM; 3LAN; 3LP0; 3LP1; 3LP2; 3M8P; 3M8Q; 3MEC; 3MED; 3MEE; 3MEG; 3N3I; 3NBP; 3PHV; 3QIN; 3QIO; 3QIP; 3T19; 3T1A; 3TAM; 4B3O; 4B3P; 4B3Q; 4I7F; 4KSE; 4KV8; 4NCG; 4Q1W; 4Q1X; 4Q1Y; 4Q5M; 4QLH; 4U1H; 4U1I; 4U1J; 4U7Q; 4U7V; 5DGU; 5DGW; 5EU7; 5HRN; 5HRP; 5HRR; 5HRS; 5IM7; 5J2M; 5J2N; 5J2P; 5J2Q; 5K14; 5KAO; 5T82; 5TC2; 5VZ6; 5XOS; 5XOT; 5YRS; 6BJ2; 6BJ3; 6BSG; 6BSH; 6BSI; 6BSJ; 6DIF; 6DIL; 6DJ1; 6DJ2; 6DJ5; 6DJ7; 6DV0; 6DV4; 6E7J; 6E9A; 6EWA; 6EX9; 6GL1; 6J1V; 6J1W; 6OR7; 6OTZ; 6P1I; 6P1X; 6P2G; 6PYL; 6SKK; 6SKM; 6SKN; 6SLQ; 6SLU; 6SMU; 6UIR; 6UIS; 6UIT; 6UJX; 6UJY; 6UJZ; 6UK0; 6VPZ; 6VQ2; 6VQD; 6VQE; 6VQY; 6VQZ; 6WAZ; 6WB1; 6WPF; 6WPH; 6WPJ; 7DOZ; 7DPQ; 7DT9; 7R7V; 7R7X; 7R80; 7SLR; 7SLS; 7XIU; 7XJ4; 7XJ5; 7XJ7; 8ERX; 8ESX; 8ESY; 8F0F; 8F5A; 8F7M; 8FCC; 8FCD; 8FCE; 8JYH; 8JYI; 8JYJ; 8TCJ; 8TCK; 8TCL; 8TCM

1 entry

Human immunodeficiency virus type 1 group M subtype B (isolate MN) (HIV-1) reference strain

1 entry

Human immunodeficiency virus type 1 group M subtype B (isolate RF/HAT3) (HIV-1) reference strain

1 entry

Human immunodeficiency virus type 1 group M subtype B (strain 89.6) (HIV-1) reference strain

1 entry

Human immunodeficiency virus type 1 group M subtype C (isolate 92BR025) (HIV-1) reference strain

1 entry

Human immunodeficiency virus type 1 group M subtype C (isolate ETH2220) (HIV-1) reference strain

1 entry

Human immunodeficiency virus type 1 group M subtype D (isolate ELI) (HIV-1) reference strain

1 entry

Human immunodeficiency virus type 1 group M subtype F1 (isolate 93BR020) (HIV-1) reference strain

1 entry

Human immunodeficiency virus type 1 group M subtype F1 (isolate VI850) (HIV-1) reference strain

1 entry

Human immunodeficiency virus type 1 group M subtype H (isolate 90CF056) (HIV-1) reference strain

1 entry

Human immunodeficiency virus type 1 group N (isolate YBF30) (HIV-1) reference strain

1 entry

Human immunodeficiency virus type 1 group O (isolate ANT70) (HIV-1) reference strain

1 entry

Human immunodeficiency virus type 2 subtype A (isolate BEN) (HIV-2) reference strain

1 entry

Human spumaretrovirus (SFVcpz(hu)) (Human foamy virus) reference strain

POL_FOAMV Pro-Pol polyprotein (Pr125Pol) [Cleaved into: Protease/Reverse transcriptase/ribonuclease H (EC ...

2LSN; 2X6N; 2X6S; 2X74; 2X78; 3DLR; 3L2Q; 3L2R; 3L2U; 3L2V; 3L2W; 3OS0; 3OS1; 3OS2; 3OY9; 3OYA; 3OYB; 3OYC; 3OYD; 3OYE; 3OYF; 3OYG; 3OYH; 3OYI; 3OYJ; 3OYK; 3OYL; 3OYM; 3OYN; 3S3M; 3S3N; 3S3O; 4BAC; 4BDY; 4BDZ; 4BE0; 4BE1; 4BE2; 4E7H; 4E7I; 4E7J; 4E7K; 4E7L; 4IKF; 4ZTF; 4ZTJ; 5FRM; 5FRN; 5FRO; 5MMA; 5MMB; 5NO1; 5UOP; 5UOQ; 6RNY; 7ADU; 7ADV

1 entry

Jembrana disease virus (JDV) reference strain

1 entry

Moloney murine leukemia virus (isolate Shinnick) (MoMLV) reference strain

POL_MLVMS Gag-Pol polyprotein (Pr180gag-pol) [Cleaved into: Matrix protein p15 (MA); RNA-binding ...

1D0E; 1D1U; 1I6J; 1MML; 1N4L; 1NND; 1QAI; 1QAJ; 1ZTT; 1ZTW; 2FJV; 2FJW; 2FJX; 2FVP; 2FVQ; 2FVR; 2FVS; 2HB5; 2M9U; 2MQV; 2MS0; 2MS1; 2R2R; 2R2S; 2R2T; 2R2U; 3FSI; 3NNQ; 4M94; 4M95; 4MH8; 4NZG; 4XO0; 4XPC; 4XPE; 5DMQ; 5DMR; 5VBS; 6B1Q; 6B1R; 6B1S; 6GZA; 6MIG; 6MIH; 6MIK; 7JQ8; 7UYN; 7UYO; 7UYP; 8CS0; 8DW1; 8DW8; 8DWM

1 entry

Mouse mammary tumor virus (strain BR6) (MMTV) reference strain

1 entry

Mouse mammary tumor virus (strain C3H) (MMTV) reference strain

1 entry

Mycobacterium phage D29 (Mycobacteriophage D29) reference strain

1 entry

Mycobacterium phage L5 (Mycobacteriophage L5) reference strain

1 entry

Pseudomonas phage Pf1 (Bacteriophage Pf1) reference strain

1 entry

Salmonella phage P22 (Bacteriophage P22) reference strain

1 entry

Simian foamy virus (isolate chimpanzee) (SFVcpz) reference strain

1 entry

Simian foamy virus type 3 (strain LK3) (SFVagm) (SFV-3) reference strain

1 entry

Simian immunodeficiency virus (isolate CPZ GAB1) (SIV-cpz) (Chimpanzee immunodeficiency virus) reference strain

1 entry

Simian immunodeficiency virus (isolate EK505) (SIV-cpz) (Chimpanzee immunodeficiency virus) reference strain

1 entry

Simian immunodeficiency virus (isolate MB66) (SIV-cpz) (Chimpanzee immunodeficiency virus) reference strain

1 entry

Simian immunodeficiency virus (isolate TAN1) (SIV-cpz) (Chimpanzee immunodeficiency virus) reference strain

1 entry

Sputnik virophage reference strain

1 entry

Sulfolobus spindle-shape virus 1 (SSV1) reference strain

1 entry

Xenotropic MuLV-related virus (isolate VP62) (XMRV) reference strain

1 entry

AKV murine leukemia virus (AKR (endogenous) murine leukemia virus)

1 entry

Avian leukosis virus (ALV)

1 entry

Baboon endogenous virus (strain M7)

1 entry

Bovine immunodeficiency virus (strain R29) (BIV) (Bovine immunodeficiency-like virus)

1 entry

Bovine leukemia virus (isolate Australian) (BLV)

1 entry

Bovine leukemia virus (isolate Japanese BLV-1) (BLV)

1 entry

Cas-Br-E murine leukemia virus

1 entry

Enterobacteria phage 434 (Bacteriophage 434)

1 entry

Enterobacteria phage P21 (Bacteriophage 21) (Bacteriophage P21)

1 entry

Enterobacteria phage phi80 (Bacteriophage phi-80)

1 entry

Equine infectious anemia virus (isolate 1369) (EIAV)

1 entry

Equine infectious anemia virus (isolate CL22) (EIAV)

1 entry

Equine infectious anemia virus (strain Wyoming) (EIAV)

1 entry

Escherichia phage HK022 (Bacteriophage HK022)

1 entry

Feline immunodeficiency virus (isolate TM2) (FIV)

1 entry

Feline immunodeficiency virus (strain San Diego) (FIV)

1 entry

Feline leukemia virus

1 entry

Friend murine leukemia virus (isolate 57) (FrMLV)

1 entry

Friend murine leukemia virus (isolate FB29) (FrMLV)

1 entry

Friend murine leukemia virus (isolate PVC-211) (FrMLV)

1 entry

Gibbon ape leukemia virus (GALV)

1 entry

Human T-cell leukemia virus 1 (isolate Melanesia mel5 subtype C) (HTLV-1)

1 entry

Human T-cell leukemia virus 3 (strain Pyl43) (HTLV-3)

1 entry

Human immunodeficiency virus type 1 group M subtype B (isolate BH10) (HIV-1)

POL_HV1B1 Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...

1A9M; 1AJV; 1AJX; 1AXA; 1BQM; 1BQN; 1D4H; 1D4I; 1D4J; 1DLO; 1DW6; 1EBK; 1EBW; 1EBY; 1EBZ; 1EC0; 1EC1; 1EC2; 1EC3; 1EET; 1G35; 1GNM; 1GNN; 1GNO; 1HAR; 1HBV; 1HEF; 1HEG; 1HIH; 1HMV; 1HNI; 1HNV; 1HOS; 1HPS; 1HPZ; 1HQE; 1HQU; 1HRH; 1HTE; 1HTF; 1HTG; 1HVI; 1HVK; 1HVU; 1HYS; 1IKV; 1IKW; 1IKX; 1IKY; 1J5O; 1KJH; 1MER; 1MES; 1MET; 1MEU; 1N5Y; 1N6Q; 1NPA; 1NPV; 1NPW; 1QE1; 1QMC; 1R0A; 1RDH; 1RTD; 1S6P; 1S6Q; 1S9E; 1S9G; 1SBG; 1SUQ; 1SV5; 1T03; 1T05; 1T7K; 1TV6; 1TVR; 1UWB; 1W5V; 1W5W; 1W5X; 1W5Y; 1YT9; 1ZP8; 1ZPA; 1ZSF; 1ZSR; 2AQU; 2B5J; 2B6A; 2BAN; 2BBB; 2BE2; 2EXF; 2G69; 2HB3; 2HMI; 2HNZ; 2HS1; 2HS2; 2I4D; 2I4U; 2I4V; 2I4W; 2I4X; 2I5J; 2IAJ; 2IC3; 2IDW; 2IEO; 2JZW; 2L45; 2L46; 2L4L; 2UXZ; 2UY0; 2VG5; 2VG6; 2VG7; 2X4U; 2YKM; 2YKN; 2ZD1; 2ZE2; 3AVI; 3BGR; 3DLK; 3GGA; 3GGV; 3GGX; 3HVT; 3IG1; 3IRX; 3IS9; 3ISN; 3ITH; 3JSM; 3JYT; 3K2P; 3K4V; 3KLE; 3KLF; 3KLG; 3KLH; 3KLI; 3NDT; 3NU3; 3NU4; 3NU5; 3NU6; 3NU9; 3NUJ; 3NUO; 3OK9; 3PSU; 3QAA; 3QLH; 3QO9; 3TKG; 3TKW; 3TL9; 3TLH; 3V4I; 3V6D; 3V81; 3ZPS; 3ZPT; 3ZPU; 4COE; 4CP7; 4CPQ; 4CPR; 4CPS; 4CPT; 4CPU; 4CPW; 4CPX; 4DG1; 4G1Q; 4G8G; 4G8I; 4G9D; 4G9F; 4H4M; 4H4O; 4I2P; 4I2Q; 4ICL; 4ID5; 4IDK; 4IFV; 4IFY; 4IG0; 4IG3; 4KFB; 4KKO; 4KO0; 4LSL; 4LSN; 4MFB; 4O44; 4O4G; 4OJR; 4PQU; 4PUO; 4PWD; 4Q0B; 4QAG; 4R5P; 4RW4; 4RW6; 4RW7; 4RW8; 4RW9; 4U8W; 4WE1; 4YE3; 4YHQ; 4ZIP; 4ZLS; 5AGZ; 5AH6; 5AH7; 5AH8; 5AH9; 5AHA; 5AHB; 5AHC; 5BRY; 5BS4; 5C24; 5C25; 5C42; 5CYM; 5CYQ; 5D3G; 5FDL; 5HBM; 5HLF; 5HP1; 5HRO; 5I3U; 5I42; 5J1E; 5JFP; 5JFU; 5JG1; 5OI2; 5OI3; 5OI5; 5OI8; 5OIA; 5T6Z; 5T70; 5TER; 5TUQ; 5TW3; 5TXL; 5TXM; 5TXN; 5TXO; 5TXP; 5UFZ; 5ULT; 5UOV; 5UPZ; 5UV5; 5V5L; 5V5M; 5VQQ; 5VQR; 5VQS; 5VQT; 5VQU; 5VQV; 5VQW; 5VQX; 5VQY; 5VQZ; 5W5W; 5YOJ; 6AMO; 6AN2; 6AN8; 6ANQ; 6AOC; 6ASW; 6AVM; 6AVT; 6B19; 6BZ2; 6C0J; 6C0K; 6C0L; 6C0N; 6C0O; 6C0P; 6C0R; 6C8X; 6C8Y; 6CGF; 6D0D; 6D0E; 6DTW; 6DTX; 6DUF; 6DUG; 6DUH; 6ECL; 6ELI; 6HAK; 6KMP; 6O48; 6O9E; 6OE3; 6OUN; 6PRF; 6UL5; 6VUG; 6WAZ; 6WB0; 6WB1; 6WB2; 6X47; 6X49; 6X4A; 6X4B; 6X4C; 6X4D; 6X4E; 6X4F; 7AHX; 7AID; 7AIF; 7AIG; 7AII; 7AIJ; 7KJV; 7KJW; 7KJX; 7KRC; 7KRD; 7KRE; 7KRF; 7KWU; 7LPW; 7LPX; 7LQU; 7LRI; 7LRM; 7LRX; 7LRY; 7LSK; 7OT6; 7OTA; 7OTK; 7OTN; 7OTX; 7OTZ; 7OUT; 7OXQ; 7OZ2; 7OZ5; 7OZW; 7P15; 7SEP; 7SIF; 7SIG; 7SIH; 7SJX; 7SNL; 7SNN; 7SNP; 7SNQ; 7SNZ; 7SO1; 7SO2; 7SO3; 7SO4; 7SO6; 7TAZ; 7U5Z; 7Z24; 7Z29; 7Z2D; 7Z2E; 7Z2G; 7Z2H; 8DX2; 8DX3; 8DX8; 8DXB; 8DXE; 8DXG; 8DXH; 8DXI; 8DXJ; 8DXK; 8DXL; 8DXM; 8FE8; 8FFX; 8STP; 8STQ; 8STR; 8STS; 8STT; 8STU; 8STV; 8U69; 8U6A; 8U6B; 8U6C; 8U6D; 8U6E; 8U6F; 8U6G; 8U6H; 8U6I; 8U6J; 8U6K; 8U6L; 8U6M; 8U6N; 8U6O; 8U6P; 8U6Q; 8U6R; 8U6S; 8U6T; 8V8F; 8VB6; 8VB7; 8VB8; 8VB9; 8VBC; 8VBD; 8VBE; 8VBF; 8VBG; 8VBH; 8VBI

1 entry

Human immunodeficiency virus type 1 group M subtype B (isolate BH5) (HIV-1)

POL_HV1B5 Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...

1BDL; 1BDQ; 1BDR; 1FEJ; 1FF0; 1FFF; 1FFI; 1FG6; 1FG8; 1FGC; 1G2K; 1HPV; 1HVJ; 1HVS; 1K1T; 1K1U; 1K2B; 1K2C; 1ODX; 1Q9P; 1TCX; 1WJE; 1WJF; 2AOC; 2AOD; 2AOE; 2AOF; 2AOG; 2AOH; 2AOI; 2AOJ; 2AVM; 2AVO; 2AVQ; 2AVS; 2AVV; 2BPV; 2BPW; 2BPX; 2BPY; 2BPZ; 2F80; 2F81; 2F8G; 2NMY; 2NMZ; 2NNK; 2NNP; 2R38; 2R3T; 2R3W; 2Z54; 3B7V; 3B80; 3BC4; 3BGB; 3BGC; 3CYW; 3CYX; 3D1X; 3D1Y; 3D1Z; 3D20; 3OXC; 6B36; 6B38; 6B3C; 6B3F; 6B3G; 6B3H

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Human immunodeficiency virus type 1 group M subtype B (isolate JRCSF) (HIV-1)

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Human immunodeficiency virus type 1 group M subtype B (isolate LW123) (HIV-1)

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Human immunodeficiency virus type 1 group M subtype B (isolate NY5) (HIV-1)

POL_HV1N5 Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); ...

1A43; 1A8O; 1AFV; 1AK4; 1AUM; 1B92; 1B9D; 1B9F; 1BAJ; 1BHL; 1BI4; 1BIS; 1BIU; 1BIZ; 1BL3; 1GWP; 1HIW; 1HYV; 1HYZ; 1ITG; 1K6Y; 1M9D; 1QS4; 1UPH; 1WJB; 1WJD; 2B4J; 2GOL; 2GON; 2H3F; 2H3I; 2H3Q; 2H3V; 2H3Z; 2HMX; 2HVP; 2ITG; 2JPR; 2JYG; 2JYL; 2LF4; 2LYA; 2LYB; 2M3Z; 2M8L; 2M8N; 2M8P; 2ONT; 2PWM; 2PWO; 2PXR; 2X2D; 2XDE; 2XV6; 2XXM; 3AV9; 3AVA; 3AVB; 3AVC; 3AVF; 3AVG; 3AVH; 3AVJ; 3AVK; 3AVL; 3AVM; 3AVN; 3DIK; 3DPH; 3DS0; 3DS1; 3DS2; 3DS3; 3DS4; 3DS5; 3DTJ; 3GV2; 3H47; 3H4E; 3L3U; 3L3V; 3LPT; 3LPU; 3LRY; 3MGE; 3NF6; 3NF7; 3NF8; 3NF9; 3NFA; 3P05; 3P0A; 3S85; 3WNE; 3WNF; 3WNG; 3WNH; 3ZCM; 3ZSO; 3ZSQ; 3ZSR; 3ZSV; 3ZSW; 3ZSX; 3ZSY; 3ZSZ; 3ZT0; 3ZT1; 3ZT2; 3ZT3; 3ZT4; 4AH9; 4AHR; 4AHS; 4AHT; 4AHU; 4AHV; 4CE9; 4CEA; 4CEB; 4CEC; 4CED; 4CEE; 4CEF; 4CEO; 4CEQ; 4CER; 4CES; 4CEZ; 4CF0; 4CF1; 4CF2; 4CF8; 4CF9; 4CFA; 4CFB; 4CFC; 4CFD; 4CGD; 4CGF; 4CGG; 4CGH; 4CGI; 4CGJ; 4CHN; 4CHO; 4CHP; 4CHQ; 4CHY; 4CHZ; 4CIE; 4CIF; 4CIG; 4CJ3; 4CJ4; 4CJ5; 4CJE; 4CJF; 4CJK; 4CJL; 4CJP; 4CJQ; 4CJR; 4CJS; 4CJT; 4CJU; 4CJV; 4CJW; 4CK1; 4CK2; 4CK3; 4COC; 4COP; 4DGA; 4DGE; 4DMN; 4E1M; 4E1N; 4E91; 4E92; 4GVM; 4GW6; 4ID1; 4IPY; 4JLH; 4JMU; 4LH4; 4LH5; 4LQW; 4NX4; 4O0J; 4O55; 4O5B; 4OVL; 4PHV; 4QNB; 4WYM; 4Y1C; 4Y1D; 4ZHR; 5HVP; 5JL4; 5KGW; 5KGX; 5KRS; 5KRT; 5TEO; 5U1C; 5VCK; 5VEA; 5VJ3; 5XN0; 5XN1; 5XN2; 6ES8; 6IK9; 6IKA; 6JCF; 6JCG; 6KDJ; 6KDK; 6KDM; 6KDN; 6KDO; 6LMI; 6LMQ; 6MCR; 6MCS; 6OOS; 6OOT; 6OOU; 6OPW; 6OPY; 6OPZ; 6OXO; 6OXP; 6OXQ; 6OXR; 6OXS; 6OXT; 6OXU; 6OXV; 6OXW; 6OXX; 6OXY; 6OXZ; 6OY0; 6OY1; 6OY2; 6OYD; 6OYR; 6PJB; 6PJC; 6PJD; 6PJE; 6PJF; 6PJG; 6PJH; 6PJI; 6PJK; 6PJL; 6PJM; 6PJN; 6PJO; 6PUT; 6PUW; 6PUY; 6PUZ; 6T6E; 6U8Q; 6UM8; 6V3K; 6VDK; 6VQS; 6VRG; 6VX2; 6W0U; 6W42; 6W6T; 7D83; 7DBM; 7DBN; 7KE0; 7L1P; 7L23; 7LDY; 7LDZ; 7LE0; 7LE1; 7LE2; 7LE3; 7LE4; 7LE5; 7LE6; 7LE7; 7LE8; 7LE9; 7LEA; 7LEB; 7LEC; 7LED; 7LEE; 7LEF; 7LEG; 7LEH; 7LEI; 7LQP; 7RQ0; 7SIA; 7T9H; 7T9O; 7U2U; 7UE1; 7UOQ; 7WBS; 7WCE; 7WCQ; 7YF6; 7ZUD; 8A1P; 8A1Q; 8BUV; 8BV2; 8CBR; 8CBS; 8CBT; 8CBU; 8CBV; 8CT5; 8CT7; 8D3S; 8F22; 8FN7; 8FND; 8FNG; 8FNH; 8FNJ; 8FNL; 8FNM; 8FNN; 8FNO; 8FNP; 8FNQ; 8S9Q; 8T52; 8T5A; 8TOV; 8TQP; 8V23; 8W09; 8W2R; 8W34; 8WF7; 8X1Z; 8X20; 8X21; 8X22; 8ZH4; 8ZHA; 9EK1; 9EK2; 9EK3; 9HVP

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Human immunodeficiency virus type 1 group M subtype B (isolate OYI) (HIV-1)

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Human immunodeficiency virus type 1 group M subtype B (isolate YU-2) (HIV-1)

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Human immunodeficiency virus type 1 group M subtype D (isolate NDK) (HIV-1)

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Human immunodeficiency virus type 1 group M subtype D (isolate Z2/CDC-Z34) (HIV-1)

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Human immunodeficiency virus type 1 group M subtype F2 (isolate MP255) (HIV-1)

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Human immunodeficiency virus type 1 group M subtype F2 (isolate MP257) (HIV-1)

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Human immunodeficiency virus type 1 group M subtype G (isolate 92NG083) (HIV-1)

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Human immunodeficiency virus type 1 group M subtype G (isolate SE6165) (HIV-1)

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Human immunodeficiency virus type 1 group M subtype H (isolate VI991) (HIV-1)

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Human immunodeficiency virus type 1 group M subtype J (isolate SE9173) (HIV-1)

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Human immunodeficiency virus type 1 group M subtype J (isolate SE9280) (HIV-1)

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Human immunodeficiency virus type 1 group M subtype K (isolate 96CM-MP535) (HIV-1)

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Human immunodeficiency virus type 1 group M subtype K (isolate 97ZR-EQTB11) (HIV-1)

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Human immunodeficiency virus type 1 group N (isolate YBF106) (HIV-1)

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Human immunodeficiency virus type 1 group O (isolate MVP5180) (HIV-1)

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Human immunodeficiency virus type 2 subtype A (isolate CAM2) (HIV-2)

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Human immunodeficiency virus type 2 subtype A (isolate D194) (HIV-2)

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Human immunodeficiency virus type 2 subtype A (isolate Ghana-1) (HIV-2)

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Human immunodeficiency virus type 2 subtype A (isolate KR) (HIV-2)

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Human immunodeficiency virus type 2 subtype A (isolate NIH-Z) (HIV-2)

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Human immunodeficiency virus type 2 subtype A (isolate ROD) (HIV-2)

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Human immunodeficiency virus type 2 subtype A (isolate SBLISY) (HIV-2)

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Human immunodeficiency virus type 2 subtype A (isolate ST) (HIV-2)

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Human immunodeficiency virus type 2 subtype B (isolate D205) (HIV-2)

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Human immunodeficiency virus type 2 subtype B (isolate EHO) (HIV-2)

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Human immunodeficiency virus type 2 subtype B (isolate UC1) (HIV-2)

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Koala retrovirus (KoRV)

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Maedi visna virus (strain 1514 / clone LV1-1KS1) (MVV) (Visna lentivirus)

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Maedi visna virus (strain 1514 / clone LV1-1KS2) (MVV) (Visna lentivirus)

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Maedi visna virus (strain 1514) (MVV) (Visna lentivirus)

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Maedi visna virus (strain KV1772) (MVV) (Visna lentivirus)

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Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus)

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Murine leukemia virus (strain BM5 eco)

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Mycobacterium phage FRAT1 (Mycobacteriophage FRAT1)

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Ovine maedi visna related virus (strain South Africa) (SA-OMVV) (Ovine lentivirus)

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Radiation murine leukemia virus

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Rous sarcoma virus subgroup B (strain Schmidt-Ruppin) (RSV-SR-B)

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Rous sarcoma virus subgroup C (strain Prague) (RSV-Pr-C)

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Sheep pulmonary adenomatosis virus (Jaagsiekte sheep retrovirus) (JSRV)

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Shigella phage Sf6 (Shigella flexneri bacteriophage VI) (Bacteriophage SfVI)

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Simian foamy virus type 1 (SFVmac) (SFV-1)

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Simian immunodeficiency virus (isolate F236/smH4) (SIV-sm) (Simian immunodeficiency virus sooty mangabey monkey)

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Simian immunodeficiency virus (isolate GB1) (SIV-mnd) (Simian immunodeficiency virus mandrill)

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Simian immunodeficiency virus (isolate Mm142-83) (SIV-mac) (Simian immunodeficiency virus rhesus monkey)

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Simian immunodeficiency virus (isolate Mm251) (SIV-mac) (Simian immunodeficiency virus rhesus monkey)

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Simian immunodeficiency virus (isolate PBj14/BCL-3) (SIV-sm) (Simian immunodeficiency virus sooty mangabey monkey)

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Simian immunodeficiency virus agm.grivet (isolate AGM gr-1) (SIV-agm.gri) (Simian immunodeficiency virus African green monkey grivet)

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Simian immunodeficiency virus agm.vervet (isolate AGM TYO-1) (SIV-agm.ver) (Simian immunodeficiency virus African green monkey vervet)

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Simian immunodeficiency virus agm.vervet (isolate AGM155) (SIV-agm.ver) (Simian immunodeficiency virus African green monkey vervet)

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Simian immunodeficiency virus agm.vervet (isolate AGM3) (SIV-agm.ver) (Simian immunodeficiency virus African green monkey vervet)

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Simian retrovirus SRV-1

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Simian retrovirus SRV-2

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Squirrel monkey retrovirus (SMRV-H) (SMRV-HLB)

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Staphylococcus phage L54a (Bacteriophage L54a)

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Woolly monkey sarcoma virus (WMSV) (Simian sarcoma-associated virus)

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Xenotropic MuLV-related virus (isolate VP35) (XMRV)

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