Tobamovirus (taxid:12234)

VIRION

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Non-enveloped, rigid helical rods with a helical symmetry. Virion is about 18 nm in diameter, and 300-310 nm in length.

GENOME

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Monopartite, linear, ssRNA(+) genome of 6.3-6.5 kb. The 3'-terminus has a tRNA-like structure. The 5' terminus has a methylated nucleotide cap (m7G5'pppG).

GENE EXPRESSION

The virion RNA is infectious and serves as both the genome and viral messenger RNA. The 5'-proximal ORFs are directly translated to produce the viral constituents of the replicase complex. RdRp is translated through suppression of termination at the end of ORF1. The small replicase is involved in replication and acts as a suppressor of RNA silencing. The movement proteins and the capsid protein are expressed from separate subgenomic mRNAs.

ENZYMES

REPLICATION

CYTOPLASMIC

  1. Virus penetrates into the host cell.
  2. Uncoating, and release of the viral genomic RNA into the cytoplasm.
  3. The viral RNA is translated to produce the two proteins necessary for RNA synthesis (replication and transcription).
  4. Replication takes place in cytoplasmic viral factories. A dsRNA genome is synthesized from the genomic ssRNA(+).
  5. The dsRNA genome is transcribed/replicated thereby providing viral mRNAs/new ssRNA(+) genomes.
  6. The RdRp recognizes internal subgenomic promoters on the negative-sense RNA to transcribe the 3'co-terminal subgenomic RNAs that will generate the capsid protein, movement protein and viral suppressor of RNA silencing (VSR).
  7. Virus assembly in the cytoplasm. Each segment (if multipartite) is encapsidated.
  8. Viral movement protein probably mediates virion cell-to-cell transfer.

Host-virus interaction

Suppression of RNA silencing

Tobacco mosaic virus 126-kDa small replicase subunit suppresses RNA silencing .

Matching UniProtKB/Swiss-Prot entries

(all links/actions below point to uniprot.org website)

81 entries grouped by protein

36 entries

Capsid protein (Coat protein)

Select_allDeselect_all
CAPSD_CGMVS
Cucumber green mottle mosaic virus (strain watermelon SH) (CGMMV) reference strain
CAPSD_SHMV
Sunn-hemp mosaic virus (SHMV) (TMV strain cowpea) reference strain
CAPSD_TMV
Tobacco mosaic virus (strain vulgare) (TMV) (Tobacco mosaic virus (strain U1)) reference strain
CAPSD_TVCV
Turnip vein-clearing virus (TVCV) reference strain
CAPSD_YOMV
Youcai mosaic virus (YoMV) reference strain
CAPSD_CGMVW
Cucumber green mottle mosaic virus (strain watermelon W) (CGMMV)
CAPSD_ORSVC
Odontoglossum ringspot virus (isolate Korean Cy) (ORSV-Cy)
CAPSD_ORSVJ
Odontoglossum ringspot virus (isolate Japan) (ORSV)
CAPSD_ORSVS
Odontoglossum ringspot virus (isolate Singapore 1) (ORSV)
CAPSD_PMMV
Paprika mild mottle virus (PaMMV)
CAPSD_PMMV0
Pepper mild mottle virus (strain P0) (PMMV)
CAPSD_PMMV1
Pepper mild mottle virus (strain P1) (PMMV)
CAPSD_PMMV2
Pepper mild mottle virus (strain P2) (PMMV)
CAPSD_PMMVI
Pepper mild mottle virus (strain Italian) (PMMV-I)
CAPSD_PMMVJ
Pepper mild mottle virus (strain Japan) (PMMV-J)
CAPSD_PMMVS
Pepper mild mottle virus (strain Spain) (PMMV-S)
CAPSD_RMV
Ribgrass mosaic virus (RMV)
CAPSD_RMVCA
Ribgrass mosaic virus (strain CAB) (RMV)
CAPSD_RMVHR
Ribgrass mosaic virus (strain Hr) (RMV) (TMV strain Holmes ribgrass)
CAPSD_TBRFV
Tomato brown rugose fruit virus (isolate TOBRFV/Tomato/Jordan/Tom1-Jo/2015) (ToBRFV)
CAPSD_TMGMV
Tobacco mild green mosaic virus (TMGMV) (TMV strain U2)
CAPSD_TMOB
Tobamovirus Ob
CAPSD_TMV06
Tobacco mosaic virus (strain 06) (TMV-06)
CAPSD_TMVB
Tobacco mosaic virus (strain B935A) (TMV)
CAPSD_TMVDA
Tobacco mosaic virus (strain Dahlemense) (TMV)
CAPSD_TMVER
Tobacco mosaic virus (strain ER) (TMV)
CAPSD_TMVKO
Tobacco mosaic virus (strain Kokubu) (TMV)
CAPSD_TMVKR
Tobacco mosaic virus (strain Korean NC 82) (TMV)
CAPSD_TMVO
Tobacco mosaic virus (strain O) (TMV)
CAPSD_TMVOM
Tobacco mosaic virus (strain OM) (TMV)
CAPSD_TMVRA
Tobacco mosaic virus (strain Rakkyo) (TMV-R)
CAPSD_TOMK1
Tomato mosaic virus (strain Kazakh K1) (ToMV) (TMV strain K1)
CAPSD_TOMK2
Tomato mosaic virus (strain Kazakh K2) (ToMV) (TMV strain K2)
CAPSD_TOMKO
Tomato mosaic virus (strain Korean) (ToMV)
CAPSD_TOML
Tomato mosaic virus (strain L) (ToMV) (TMV strain tomato)
CAPSD_TOMS1
Tomato mosaic virus (strain S-1) (ToMV)

25 entries

Movement protein (30 kDa protein) (Cell-to-cell transport protein)

Select_allDeselect_all
MVP_CGMVS
Cucumber green mottle mosaic virus (strain watermelon SH) (CGMMV) reference strain

Movement protein (28.8 kDa protein) (Cell-to-cell transport protein)

MVP_SHMV
Sunn-hemp mosaic virus (SHMV) (TMV strain cowpea) reference strain
MVP_TMV
Tobacco mosaic virus (strain vulgare) (TMV) (Tobacco mosaic virus (strain U1)) reference strain
MVP_TVCV
Turnip vein-clearing virus (TVCV) reference strain
MVP_YOMV
Youcai mosaic virus (YoMV) reference strain
MVP_CGMVW
Cucumber green mottle mosaic virus (strain watermelon W) (CGMMV)

Movement protein (28.8 kDa protein) (Cell-to-cell transport protein)

MVP_ORSVC
Odontoglossum ringspot virus (isolate Korean Cy) (ORSV-Cy)

Movement protein (33.4 kDa protein) (Cell-to-cell transport protein)

MVP_ORSVJ
Odontoglossum ringspot virus (isolate Japan) (ORSV)

Movement protein (33.4 kDa protein) (Cell-to-cell transport protein)

MVP_ORSVS
Odontoglossum ringspot virus (isolate Singapore 1) (ORSV)
MVP_PMMVJ
Pepper mild mottle virus (strain Japan) (PMMV-J)
MVP_PMMVS
Pepper mild mottle virus (strain Spain) (PMMV-S)
MVP_RMV
Ribgrass mosaic virus (RMV)
MVP_TBRFV
Tomato brown rugose fruit virus (isolate TOBRFV/Tomato/Jordan/Tom1-Jo/2015) (ToBRFV)
MVP_TMGMV
Tobacco mild green mosaic virus (TMGMV) (TMV strain U2)

Movement protein (28.5 kDa protein) (Cell-to-cell transport protein)

MVP_TMOB
Tobamovirus Ob
MVP_TMVB
Tobacco mosaic virus (strain B935A) (TMV)
MVP_TMVKR
Tobacco mosaic virus (strain Korean NC 82) (TMV)
MVP_TMVOM
Tobacco mosaic virus (strain OM) (TMV)
MVP_TMVRA
Tobacco mosaic virus (strain Rakkyo) (TMV-R)
MVP_TOMK1
Tomato mosaic virus (strain Kazakh K1) (ToMV) (TMV strain K1)
MVP_TOMK2
Tomato mosaic virus (strain Kazakh K2) (ToMV) (TMV strain K2)
MVP_TOML
Tomato mosaic virus (strain L) (ToMV) (TMV strain tomato)
MVP_TOML2
Tomato mosaic virus (strain LII) (ToMV)
MVP_TOMLA
Tomato mosaic virus (strain LIIa) (ToMV)
MVP_TOMS1
Tomato mosaic virus (strain S-1) (ToMV)

20 entries

Replicase large subunit (EC 2.1.1.-) (EC 2.7.7.-) (EC 2.7.7.48) (EC 3.6.4.13) (183 kDa protein) (RNA-directed RNA polymerase)

Select_allDeselect_all
RDRP_CGMVS
Cucumber green mottle mosaic virus (strain watermelon SH) (CGMMV) reference strain

Replicase large subunit (EC 2.7.7.48) (186 kDa protein)

RDRP_SHMV
Sunn-hemp mosaic virus (SHMV) (TMV strain cowpea) reference strain
RDRP_TMV
Tobacco mosaic virus (strain vulgare) (TMV) (Tobacco mosaic virus (strain U1)) reference strain
RDRP_TMVOM
Tobacco mosaic virus (strain OM) (TMV) reference strain
RDRP_TVCV
Turnip vein-clearing virus (TVCV) reference strain
RDRP_YOMV
Youcai mosaic virus (YoMV) reference strain

Replicase large subunit (EC 2.7.7.48) (182 kDa protein)

RDRP_ORSVC
Odontoglossum ringspot virus (isolate Korean Cy) (ORSV-Cy)
RDRP_ORSVS
Odontoglossum ringspot virus (isolate Singapore 1) (ORSV)
RDRP_PMMVJ
Pepper mild mottle virus (strain Japan) (PMMV-J)
RDRP_PMMVS
Pepper mild mottle virus (strain Spain) (PMMV-S)
RDRP_TBRFV
Tomato brown rugose fruit virus (isolate TOBRFV/Tomato/Jordan/Tom1-Jo/2015) (ToBRFV)
RDRP_TMGMV
Tobacco mild green mosaic virus (TMGMV) (TMV strain U2)
RDRP_TMOB
Tobamovirus Ob
RDRP_TMVB
Tobacco mosaic virus (strain B935A) (TMV)
RDRP_TMVKR
Tobacco mosaic virus (strain Korean NC 82) (TMV)
RDRP_TMVRA
Tobacco mosaic virus (strain Rakkyo) (TMV-R)
RDRP_TOMK1
Tomato mosaic virus (strain Kazakh K1) (ToMV) (TMV strain K1)
RDRP_TOMK2
Tomato mosaic virus (strain Kazakh K2) (ToMV) (TMV strain K2)
RDRP_TOML
Tomato mosaic virus (strain L) (ToMV) (TMV strain tomato)
RDRP_TOMS1
Tomato mosaic virus (strain S-1) (ToMV)
These structures were created with the help of Colabfold by Jason Nomburg, Nathan Price and Jennifer Doudna (ModelArchive).

Bell pepper mottle virus taxid:368735

Protein ModelArchive
126 kDa replicase ma-jd-viral-38457
Capsid protein ma-jd-viral-23819
Movement protein (Cell-to-cell transport protein) ma-jd-viral-27437
Replicase large subunit ma-jd-viral-19492

Brugmansia mild mottle virus taxid:402399

Protein ModelArchive
125 kDa replicase ma-jd-viral-38454
Capsid protein ma-jd-viral-23823
Movement protein (Cell-to-cell transport protein) ma-jd-viral-27443

Cactus mild mottle virus taxid:229030

Protein ModelArchive
Capsid protein ma-jd-viral-23806
Movement protein ma-jd-viral-28533
Replicase ma-jd-viral-38458

Clitoria yellow mottle virus taxid:1128119

Protein ModelArchive
Capsid protein ma-jd-viral-23802
Movement protein ma-jd-viral-27454
Replicase ma-jd-viral-38479

Frangipani mosaic virus taxid:99585

Protein ModelArchive
129 kDa replicase ma-jd-viral-38455
Capsid protein ma-jd-viral-23803
Movement protein (Cell-to-cell transport protein) ma-jd-viral-27447

Hibiscus latent Fort Pierce virus taxid:233051

Protein ModelArchive
128 kDa replicase (128kDa protein) ma-jd-viral-38465
31 kDa movement protein ma-jd-viral-27449
Capsid protein ma-jd-viral-23816

Hibiscus latent Singapore virus taxid:185955

Protein ModelArchive
Capsid protein ma-jd-viral-23825
Movement protein (Cell-to-cell transport protein) ma-jd-viral-27444
Replicase ma-jd-viral-38447

Maracuja mosaic virus taxid:368736

Protein ModelArchive
126 kDa replicase ma-jd-viral-38462
Capsid protein ma-jd-viral-23810
Movement protein (Cell-to-cell transport protein) ma-jd-viral-27453
Replicase large subunit ma-jd-viral-19513

Passion fruit mosaic virus taxid:1032457

Protein ModelArchive
125 kDa protein ma-jd-viral-38480
Capsid protein ma-jd-viral-23808
Movement protein (Cell-to-cell transport protein) ma-jd-viral-27448

Plumeria mosaic virus taxid:1501716

Protein ModelArchive
Capsid protein ma-jd-viral-23807
Movement protein (Cell-to-cell transport protein) ma-jd-viral-27442
Replicase small protein ma-jd-viral-38477

Rattail cactus necrosis-associated virus taxid:1123754

Protein ModelArchive
128 kDa replication protein ma-jd-viral-38453
Capsid protein ma-jd-viral-23813
Movement protein (Cell-to-cell transport protein) ma-jd-viral-28534

Rehmannia mosaic virus taxid:425279

Protein ModelArchive
126 kDa protein ma-jd-viral-38449
Capsid protein ma-jd-viral-23821
Movement protein (Cell-to-cell transport protein) ma-jd-viral-27439

Ribgrass mosaic virus taxid:51680

Protein ModelArchive
Capsid protein ma-jd-viral-23805
Movement protein (Cell-to-cell transport protein) ma-jd-viral-27445
RNA replicase component ma-jd-viral-38464

Tomato brown rugose fruit virus taxid:1761477

Protein ModelArchive
Capsid protein ma-jd-viral-23818

Tomato brown rugose fruit virus (isolate TOBRFV/Tomato/Jordan/Tom1-Jo/2015) taxid:2654645

Protein ModelArchive
Capsid protein (Coat protein) ma-jd-viral-23818
Movement protein (30 kDa protein) (Cell-to-cell transport protein) ma-jd-viral-27450
Replicase large subunit (EC 2.1.1.-) (EC 2.7.7.-) (EC 2.7.7.48) (EC 3.6.4.13) (183 kDa protein) (RNA-directed RNA... ma-jd-viral-38440

Tomato mosaic virus taxid:12253

Protein ModelArchive
126 kDa protein (126 kDa replicase) (Methyltranferase/helicase) ma-jd-viral-38439
Capsid protein ma-jd-viral-23820
Capsid protein ma-jd-viral-23820
Capsid protein ma-jd-viral-23820
Movement protein (Cell-to-cell transport protein) ma-jd-viral-27446

Tomato mosaic virus (strain L) taxid:12252

Protein ModelArchive
Capsid protein (Coat protein) ma-jd-viral-23820
Replicase large subunit (EC 2.1.1.-) (EC 2.7.7.-) (EC 2.7.7.48) (EC 3.6.4.13) (183 kDa protein) (RNA-directed RNA... ma-jd-viral-38439

Tomato mottle mosaic virus taxid:1391702

Protein ModelArchive
Capsid protein ma-jd-viral-23822
Capsid protein ma-jd-viral-23822
Methyltransferase/helicase ma-jd-viral-38441
Movement protein (Cell-to-cell transport protein) ma-jd-viral-27441

Tropical soda apple mosaic virus taxid:327387

Protein ModelArchive
125 kDa replicase ma-jd-viral-38435
Capsid protein ma-jd-viral-23824
Movement protein (Cell-to-cell transport protein) ma-jd-viral-27440

Turnip vein-clearing virus taxid:29272

Protein ModelArchive
Capsid protein ma-jd-viral-23804
Capsid protein (Coat protein) ma-jd-viral-23804
Movement protein (30 kDa protein) (Cell-to-cell transport protein) ma-jd-viral-27436
Replicase large subunit (EC 2.1.1.-) (EC 2.7.7.-) (EC 2.7.7.48) (EC 3.6.4.13) (183 kDa protein) (RNA-directed RNA... ma-jd-viral-38434

Yellow tailflower mild mottle virus taxid:1416026

Protein ModelArchive
129k replicase protein ma-jd-viral-38478
Capsid protein ma-jd-viral-23809
Movement protein (Cell-to-cell transport protein) ma-jd-viral-27451

Youcai mosaic virus taxid:228578

Protein ModelArchive
Capsid protein ma-jd-viral-23811
Capsid protein (Coat protein) ma-jd-viral-23811
Movement protein (30 kDa protein) (Cell-to-cell transport protein) ma-jd-viral-27438