Gemykibivirus (taxid:1941236)

VIRION

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Non-enveloped, round, T=1 icosahedral symmetry, about 20 nm in diameter.

GENOME

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Monopartite, circular, ssDNA genome genome of about 2.2 kb. There are coding regions in both the virion (positive) and complementary (negative) sense strands.
The replication (Rep) protein initiates and terminates rolling circle replication. Two intergenic regions separate the two ORFs.
The short intergenic region contains bidirectional polyadenylation signals.

GENE EXPRESSION

Transcription is bidirectional from the long intergenic region (LIR) which contains two divergent promoters. The resulting transcripts encode a capsid protein and a replication-associated protein.

ENZYMES

REPLICATION

  1. Virus attaches to host cell, and genomic DNA penetrates into the cytoplasm.
  2. Presumably the ssDNA is converted to dsDNA.
  3. Transcription of viral genes, possibly by a host RNA polymerase.
  4. Genome replication, possibly by rolling circle
  5. Assembly and release of virions.
These structures were created with the help of Colabfold by Jason Nomburg, Nathan Price and Jennifer Doudna (ModelArchive).

Badger associated gemykibivirus 1 taxid:1634484

Protein ModelArchive
Capsid ma-jd-viral-28699
Rep ma-jd-viral-20578

Black robin associated gemykibivirus 1 taxid:1391037

Protein ModelArchive
Capsid protein ma-jd-viral-28668
Replication-associated protein ma-jd-viral-20292

Blackbird associated gemykibivirus 1 taxid:1391038

Protein ModelArchive
Capsid protein ma-jd-viral-28704
Replication-associated protein ma-jd-viral-20297

Dragonfly associated gemykibivirus 1 taxid:1234887

Protein ModelArchive
Putative coat protein ma-jd-viral-28700
Replication-associated protein ma-jd-viral-16989
Replication-associated protein ma-jd-viral-20144
Spliced replication-associated protein ma-jd-viral-17017

Gemycircularvirus HV-GcV2 taxid:1862825

Protein ModelArchive
Capsid protein ma-jd-viral-28713
Replication initiation associated protein ma-jd-viral-20249
Uncharacterized protein ma-jd-viral-33825

Mongoose feces-associated gemycircularvirus a taxid:1634485

Protein ModelArchive
Capsid ma-jd-viral-28658
Rep ma-jd-viral-16984

Mongoose feces-associated gemycircularvirus b taxid:1634486

Protein ModelArchive
Capsid ma-jd-viral-28733
Rep ma-jd-viral-20478

Mongoose feces-associated gemycircularvirus c taxid:1634488

Protein ModelArchive
Capsid ma-jd-viral-28666
Replication-associated protein ma-jd-viral-20454

Sewage associated gemycircularvirus 3 taxid:1843761

Protein ModelArchive
Capsid protein ma-jd-viral-28680
RepA ma-jd-viral-17012
Replication-associated protein ma-jd-viral-17034

Thrips-associated genomovirus 3 taxid:1941237

Protein ModelArchive
Capsid protein ma-jd-viral-28708
RepA ma-jd-viral-17033
Replication-associated protein ma-jd-viral-17016