Skip to main content

Hepadnaviridae (taxid:10404)

VIRION

image

Enveloped, spherical. Diameter from about 42nm. Icosahedric capsid with a T=4 symmetry.
image

GENOME

image Partially dsDNA circular genome, about 3.2 kb in size. Encodes for 7 proteins.
On rare non-specific recombination, the viral genome can be integrated in host chromosome. This inactivates the integrated virus but can gives the host cell a replicative advantage sometimes leading to hepatocarcinoma.

GENE EXPRESSION

The minichromosome is transcribed by cellular RNA polymerase II under the control of three to four promoters (the core, pre-S1, pre-S2/S promoters, and the X promoter in mammalian viruses) and two enhancer regions (ENH1 and ENH2). The pre-genomic RNA is alternatively spliced. The unspliced form is exported from the nucleus through a PRE motif possibly by capsid protein. The Polymerase and short S proteins are expressed by leaky scanning from the pg mRNA and the S mRNA respectively.

ENZYMES

  • Reverse transcriptase
    • RNA-dependent DNA polymerase [P]
    • DNA-dependent DNA polymerase [P]
    • Protein-primed terminal transferase [P]
  • RNAse H [P]

image

REPLICATION

CYTOPLASMIC/NUCLEAR

  1. Virus attaches to host receptors through major surface antigen and enters the cell by an unknown mechanism.
  2. Relaxed circular DNA (RC-DNA) and capsid are transported via microtubules to the nucleus where DNA is released through the nuclear pore, and repaired to form covalently closed circular DNA (cccDNA).
  3. Transcription by RNA polymerase II of the pregenomic RNA (pgRNA) and subgenomic mRNAs, inducing synthesis of all the viral proteins.
  4. pgRNA is encapsidated, together with the P protein, and reverse-transcribed inside the nucleocapsid in (-)DNA covalently linked to P protein.
  5. (+)DNA synthesis from the (-)DNA template generates new RC-DNA.
  6. Transport to the nucleus of new RC-DNA leads to cccDNA amplification; alternatively, the RC-DNA containing nucleocapsids are enveloped at the ER, and new virions are released by exocytosis.

Host-virus interaction

Primary receptor

HBV L surface protein can bind to heparan sulfate

Entry receptor

HBV L surface protein Binds to SLC10A1/NTCP in order to enter hepatocytes.

Autophagy modulation

HBV protein HBx seems to be able to increase autophagy through the up-regulation of host beclin 1 expression .

Cell-cycle modulation

HBV protein HBx protein deregulates cell cycle checkpoint controls at G0/G1 and G2/M .

Innate immune response inhibition

HBV protein HBx directly interacts with and inhibits host MAVS protein by inducing its ubiquitination and targeting it for degradation .

Matching UniProtKB/Swiss-Prot entries

(all links/actions below point to uniprot.org website)

0 entry grouped by strain

These structures were created with the help of Colabfold by Jason Nomburg, Nathan Price and Jennifer Doudna (ModelArchive).

Hepatitis B virus taxid:10407

Protein ModelArchive
Capsid protein (Core antigen) (Core protein) (HBcAg) (p21.5) ma-jd-viral-16242
Capsid protein (Core antigen) (Core protein) (HBcAg) (p21.5) ma-jd-viral-16247
HBsAg (Surface antigen) (Major Surface Antigen) (S protein) (Small surface antigen) (Small surface... ma-jd-viral-48173
Large envelope protein (L glycoprotein) (L-HBsAg) (LHB) (Large S protein) (Large surface protein) (Major surface... ma-jd-viral-48176
Middle S protein (Middle surface antigen) ma-jd-viral-48171
Protein P ma-jd-viral-49615
Protein X (HBx) (Peptide X) (pX) ma-jd-viral-29343
Small surface protein ma-jd-viral-48173
Small surface protein ma-jd-viral-48173
Small surface protein ma-jd-viral-48173

Hepatitis B virus genotype D subtype ayw (isolate France/Tiollais/1979) taxid:490133

Protein ModelArchive
Capsid protein (Core antigen) (Core protein) (HBcAg) (p21.5) ma-jd-viral-16247

Horseshoe bat hepatitis B virus taxid:1508711

Protein ModelArchive
External core antigen ma-jd-viral-16246
Protein P (EC 2.7.7.49) (EC 2.7.7.7) ma-jd-viral-49622
Protein X (HBx) (Peptide X) (pX) ma-jd-viral-29346
Surface protein ma-jd-viral-48177

Parrot hepatitis B virus taxid:1128118

Protein ModelArchive
Core protein ma-jd-viral-16230
Large envelope protein ma-jd-viral-35063
Large envelope protein (L glycoprotein) (L-HBsAg) (Large S protein) (Large surface protein) (Major surface... ma-jd-viral-31998
Precore/core protein ma-jd-viral-16233
Protein P (EC 2.7.7.49) (EC 2.7.7.7) (EC 3.1.26.4) ma-jd-viral-49625

Roundleaf bat hepatitis B virus taxid:1508710

Protein ModelArchive
External core antigen ma-jd-viral-16241
Protein P (EC 2.7.7.49) (EC 2.7.7.7) ma-jd-viral-49613
Protein X (HBx) (Peptide X) (pX) ma-jd-viral-29342
Surface protein ma-jd-viral-48179

Sheldgoose hepatitis B virus taxid:259898

Protein ModelArchive
Core protein ma-jd-viral-16235
Large envelope protein ma-jd-viral-35068
Large envelope protein (L glycoprotein) (L-HBsAg) (Large S protein) (Large surface protein) (Major surface... ma-jd-viral-31999
Precore protein ma-jd-viral-16237
Protein P (EC 2.7.7.49) (EC 2.7.7.7) (EC 3.1.26.4) ma-jd-viral-49621

Snow goose hepatitis B virus taxid:89623

Protein ModelArchive
Core antigen ma-jd-viral-16234
Large envelope protein ma-jd-viral-35064
Large envelope protein (L glycoprotein) (L-HBsAg) (Large S protein) (Large surface protein) (Major surface... ma-jd-viral-32000
PreC antigen ma-jd-viral-16236
Protein P (EC 2.7.7.49) (EC 2.7.7.7) (EC 3.1.26.4) ma-jd-viral-49623

Tent-making bat hepatitis B virus taxid:1508712

Protein ModelArchive
Core protein ma-jd-viral-16240
Protein P (EC 2.7.7.49) (EC 2.7.7.7) ma-jd-viral-49618
Protein X (HBx) (Peptide X) (pX) ma-jd-viral-29348
Surface protein ma-jd-viral-48178

White sucker hepatitis B virus taxid:1690672

Protein ModelArchive
Large envelope protein ma-jd-viral-48096
PreC/core protein ma-jd-viral-16238
Protein P (EC 2.7.7.49) (EC 2.7.7.7) (EC 3.1.26.4) ma-jd-viral-49619