T=3 icosahedral capsid protein (kw:KW-1142)


image The capsid is composed 60 asymmetric units made of 3 protein (T=3), for a total of 180 capsid proteins.



image

Icosahedric triangulation number is calculated following Caspar and Klug system

Viral molecular biology Virion
Virus entry
Virus latency
Transcription and replication
Host-virus interactions
Virus exit
Icosahedric capsids Virus symmetry and T number
T=1
T=2*
T=3
Pseudo T=3
T=4
T=7
T=9
T=13
T=16
T=21/pseudo T=21
T=25/pseudo T=25
T=27/pseudo T=27
T=28
T=31/pseudo T=31
T=75 bacterial carboxysome
T=169
Links image
Uniprot Keyword: KW-1142
GO ontology: GO:0039617
Virus ssRNA+
Astroviridae
Nodaviridae
Caliciviridae
Hepeviridae
Leviviridae
Bromoviridae (not all genera)
Tombusviridae
Tymoviridae
Sobemovirus
Polemovirus
Umbravirus
Bacteria Encapsulins

Matching UniProtKB/Swiss-Prot entries

(all links/actions below point to uniprot.org website)

135 entries grouped by protein

127 entries

Capsid protein (CP) (Coat protein)

Select_allDeselect_all
CAPSD_AMVLE
Alfalfa mosaic virus (strain 425 / isolate Leiden) reference strain
CAPSD_BMV
Brome mosaic virus (BMV) reference strain

pdb 1JS9; 1YC6; 3J7L; 3J7M; 3J7N; 6VOC

CAPSD_BPGA
Enterobacteria phage GA (Bacteriophage GA) reference strain

pdb 1GAV; 1UNA

CAPSD_BPMS2
Escherichia phage MS2 (Bacteriophage MS2) reference strain

pdb 1AQ3; 1AQ4; 1BMS; 1MSC; 1MST; 1MVA; 1MVB; 1U1Y; 1ZDH; 1ZDI; 1ZDJ; 1ZDK; 1ZSE; 2B2D; 2B2E; 2B2G; 2BNY; 2BQ5; 2BS0; 2BS1; 2BU1; 2C4Q; 2C4Y; 2C4Z; 2C50; 2C51; 2IZ8; 2IZ9; 2IZM; 2IZN; 2MS2; 2VTU; 2WBH; 4BP7; 4ZOR; 5MSF; 5TC1; 6MSF; 6RRS; 6RRT; 7MSF

CAPSD_BPMX1
Qbeta virus (strain MX1) reference strain
CAPSD_BPPH2
Bacillus phage phi29 (Bacteriophage phi-29) reference strain

Major capsid protein (Gene product 8) (gp8) (Major head protein) (Protein p8)

pdb 6QVK; 6QYD; 6QZ0; 8F2M; 8F2N; 8F2O

CAPSD_BPPP7
Pseudomonas phage PP7 (Bacteriophage PP7) reference strain

pdb 1DWN; 2QUD; 2QUX; 6N4V; 8TUX

CAPSD_BPSP
Enterobacteria phage SP (Bacteriophage SP) reference strain
CAPSD_BYDVP
Barley yellow dwarf virus (isolate PAV) (BYDV) reference strain

Major capsid protein (Coat protein) (CP)

CAPSD_CARMS
Carnation mottle virus (isolate China/Shanghai) (CarMV) reference strain

Capsid protein (Coat protein) (p38)

CAPSD_CFMVN
Cocksfoot mottle virus (isolate Dactylis glomerata/Norway/CfMV-NO/1995) (CfMV) reference strain

Capsid protein (CP) (Coat protein) (Protein P4)

CAPSD_CMVFN
Cucumber mosaic virus (strain FNY) (CMV) reference strain

pdb 1F15

CAPSD_CRSVL
Carnation ringspot virus (isolate Lommel) (CRSV) reference strain

Capsid protein (Coat protein)

CAPSD_FCVUR
Feline calicivirus (strain Cat/United States/Urbana/1960) (FCV) reference strain

Capsid protein VP1 (CP) (Coat protein) (Protein 73 kDa)

CAPSD_GFKVM
Grapevine fleck virus (isolate Italy/MT48) (GFkV) reference strain

Capsid protein (CP) (Coat protein) (Virion protein)

CAPSD_HASV1
Human astrovirus-1 (HAstV-1) reference strain

Capsid polyprotein VP90

pdb 5EWN; 5EWO

CAPSD_HPBVH
Human picobirnavirus (strain Human/Thailand/Hy005102/-) (PBV) reference strain

Capsid protein precursor

pdb 6Z8D; 6Z8E; 6Z8F

CAPSD_MCMVK
Maize chlorotic mottle virus (isolate United States/Kansas/1987) (MCMV) reference strain

Capsid protein (Coat protein) (p25)

CAPSD_MNSV
Melon necrotic spot virus (MNSV) reference strain

Capsid protein (Coat protein) (p42)

pdb 2ZAH

CAPSD_NODAM
Nodamura virus (strain Mag115) (NoV) reference strain

Capsid protein alpha (EC 3.4.23.44)

pdb 1NOV

CAPSD_NVN68
Norovirus (strain Human/NoV/United States/Norwalk/1968/GI) (Hu/NV/NV/1968/US) reference strain

Capsid protein VP1 (CP) (Coat protein) (p59)

pdb 1IHM; 2ZL5; 2ZL6; 2ZL7; 3BY1; 3BY2; 3D26; 5KW9; 5N7M; 6CRJ; 6H6Y; 6H6Z; 6H70; 6H71; 6H72; 6OUT; 7KJP

CAPSD_OCSVU
Oat chlorotic stunt virus (isolate United Kingdom) (OCSV) reference strain

Capsid protein (p48)

CAPSD_OLV2I
Olive latent virus 2 (isolate Italy) (OLV-2) reference strain
CAPSD_PEMVW
Pea enation mosaic virus-1 (strain WSG) (PEMV-1) reference strain

Major capsid protein (Coat protein) (CP)

CAPSD_PLRV1
Potato leafroll virus (strain Potato/Scotland/strain 1/1984) (PLrV) reference strain

Major capsid protein (Coat protein) (CP) (P3)

pdb 6SCO; 7RLM

CAPSD_PMVK
Panicum mosaic virus (strain United States/Kansas 109S) (PMV) reference strain

Capsid protein (Coat protein) (p26)

pdb 4V99

CAPSD_PNLV
Poinsettia latent virus (isolate Euphorbia pulcherrima/Germany/Siepen/2005) (PnLV) (Poinsettia cryptic virus) reference strain
CAPSD_POLVP
Pothos latent virus (isolate Pigeonpea/India) (PoLV) reference strain

Capsid protein (p40)

CAPSD_PZSVT
Pelargonium zonate spot virus (isolate Tomato/Italy/1982) (PZSV) (Pelargonium zonate spot virus (isolate Tomato)) reference strain
CAPSD_RCNMV
Red clover necrotic mosaic virus (RCNMV) reference strain

Capsid protein (Coat protein)

pdb 6MRM

CAPSD_SBMVA
Southern bean mosaic virus (isolate Bean/United States/Arkansas) (SBMV) reference strain
CAPSD_SCPMV
Southern cowpea mosaic virus (SCPMV) (Southern bean mosaic virus (strain cowpea)) reference strain

Capsid protein (Coat protein)

pdb 4SBV

CAPSD_SJNNV
Striped jack nervous necrosis virus (SjNNV) reference strain

Capsid protein alpha

pdb 6RJ0

CAPSD_TAV
Tomato aspermy virus (TAV) reference strain

pdb 1LAJ

CAPSD_TBSVC
Tomato bushy stunt virus (strain Cherry) (TBSV) reference strain

Capsid protein (Coat protein) (p41)

CAPSD_TCV
Turnip crinkle virus (TCV) reference strain

Capsid protein (Coat protein) (p38)

pdb 3ZX8; 3ZX9; 3ZXA

CAPSD_TNVA
Tobacco necrosis virus (strain A) (TNV-A) reference strain

Capsid protein (p30)

CAPSD_TOBSV
Tobacco streak virus (strain WC) (TSV) reference strain
CAPSD_TYMV
Turnip yellow mosaic virus reference strain

Capsid protein (Coat protein) (Virion protein)

pdb 1AUY; 1W39

CAPSD_TYYVF
Turnip yellows virus (isolate FL-1) (TuYV) (BWYV-FL1) reference strain

Major capsid protein (Coat protein) (CP)

pdb 6RTK

CAPSD_VESVA
Vesicular exanthema of swine virus serotype A48 (isolate Swine/United States/A48/1948) (VESV) reference strain

Capsid protein VP1 (CP) (Capsid protein) (Coat protein)

CAPSD_AMCV
Artichoke mottled crinkle virus (AMCV)

Capsid protein (Coat protein) (p41)

CAPSD_AMVMA
Alfalfa mosaic virus (strain 425 / isolate Madison)

pdb 7EPP

CAPSD_AMVST
Alfalfa mosaic virus (strain Strasbourg)
CAPSD_AMVYS
Alfalfa mosaic virus (strain YSMV)

pdb 1XOK

CAPSD_BBMV
Broad bean mottle virus
CAPSD_BBV
Black beetle virus (BBV)

Capsid protein alpha (EC 3.4.23.44)

pdb 2BBV

CAPSD_BLRV
Bean leafroll virus (BLRV)

Major capsid protein (Coat protein) (CP)

CAPSD_BMDV
Belladonna mottle virus (BMDV)

Capsid protein (Coat protein) (Virion protein)

CAPSD_BOOLV
Boolarra virus (BoV)

Capsid protein alpha (EC 3.4.23.44)

CAPSD_BPB03
Bacillus phage B103 (Bacteriophage B103)

Major capsid protein (Gene product 8) (gp8) (Major head protein) (Protein p8)

CAPSD_BPF2
Enterobacteria phage f2 (Bacteriophage f2)
CAPSD_BPFR
Enterobacteria phage fr (Bacteriophage fr)

pdb 1FR5; 1FRS

CAPSD_BPJP3
Enterobacteria phage JP34 (Bacteriophage JP34)
CAPSD_BPPRR
Pseudomonas phage PRR1 (Bacteriophage PRR1)

pdb 2VF9; 4ANG

CAPSD_BPPZA
Bacillus phage PZA (Bacteriophage PZA)

Major capsid protein (Gene product 8) (gp8) (Major head protein) (Protein p8)

CAPSD_BPQBE
Escherichia virus Qbeta (Bacteriophage Q-beta)

pdb 1QBE; 4L8H; 5KIP; 5VLY; 5VLZ; 7LGE; 7LGF; 7LGG; 7LGH; 7LHD

CAPSD_BPR17
Enterobacteria phage R17 (Bacteriophage R17)
CAPSD_BPZR
Enterobacteria phage ZR (Bacteriophage ZR)
CAPSD_BYDVM
Barley yellow dwarf virus (isolate MAV) (BYDV)

Major capsid protein (Coat protein) (CP)

CAPSD_BYDVN
Barley yellow dwarf virus (isolate NY-RPV) (BYDV)

Major capsid protein (Coat protein) (CP)

CAPSD_BYDVR
Barley yellow dwarf virus (isolate P-PAV) (BYDV)

Major capsid protein (Coat protein) (CP)

CAPSD_CACV4
Canine calicivirus (strain 48) (CaCV)

Capsid protein VP1 (CP) (Capsid protein) (Coat protein)

CAPSD_CARMV
Carnation mottle virus (CarMV)

Capsid protein (Coat protein) (p38)

pdb 1OPO

CAPSD_CAYMV
Cacao yellow mosaic virus

Capsid protein (Coat protein) (Virion protein)

CAPSD_CCMV
Cowpea chlorotic mottle virus (CCMV)

pdb 1CWP; 1ZA7; 8BI4; 8C38; 8CPY

CAPSD_CMVAS
Cucumber mosaic virus (strain As) (CMV)
CAPSD_CMVBA
Cucumber mosaic virus (strain Banana) (CMV)
CAPSD_CMVC
Cucumber mosaic virus (strain C) (CMV)
CAPSD_CMVC7
Cucumber mosaic virus (strain C7-2) (CMV)
CAPSD_CMVCS
Cucumber mosaic virus (strain CS) (CMV)
CAPSD_CMVDK
Cucumber mosaic virus (strain DKRD) (CMV)
CAPSD_CMVE5
Cucumber mosaic virus (strain E5) (CMV)
CAPSD_CMVFC
Cucumber mosaic virus (strain FC) (CMV)
CAPSD_CMVFT
Cucumber mosaic virus (strain FT) (CMV)
CAPSD_CMVI1
Cucumber mosaic virus (strain I17F) (CMV)
CAPSD_CMVII
Cucumber mosaic virus (strain Iizuka) (CMV)
CAPSD_CMVIX
Cucumber mosaic virus (strain Ixora) (CMV)
CAPSD_CMVKI
Cucumber mosaic virus (strain Kin) (CMV)
CAPSD_CMVKO
Cucumber mosaic virus (strain Kor) (CMV)
CAPSD_CMVM
Cucumber mosaic virus (strain M) (CMV)
CAPSD_CMVM4
Cucumber mosaic virus (strain M48) (CMV)
CAPSD_CMVN
Cucumber mosaic virus (strain N) (CMV)
CAPSD_CMVNT
Cucumber mosaic virus (strain NT9) (CMV)
CAPSD_CMVO
Cucumber mosaic virus (strain O) (CMV)
CAPSD_CMVP6
Cucumber mosaic virus (strain P6) (CMV)
CAPSD_CMVPE
Cucumber mosaic virus (strain Pepo) (CMV)
CAPSD_CMVQ
Cucumber mosaic virus (strain Q) (CMV)
CAPSD_CMVS
Cucumber mosaic virus (strain S) (CMV)
CAPSD_CMVTR
Cucumber mosaic virus (strain Trk7) (CMV)
CAPSD_CMVWL
Cucumber mosaic virus (strain WL) (CMV)
CAPSD_CMVY
Cucumber mosaic virus (strain Y) (CMV)
CAPSD_CNV
Cucumber necrosis virus (CNV)

Capsid protein (Coat protein) (p41)

pdb 4LLF

CAPSD_CRV
Cymbidium ringspot virus (CymRSV)

Capsid protein (Coat protein) (p41)

CAPSD_ELV
Erysimum latent virus (ELV)

Capsid protein (Coat protein) (Virion protein)

CAPSD_EPMV
Eggplant mosaic virus

Capsid protein (Coat protein) (Virion protein)

CAPSD_FCVC6
Feline calicivirus (strain CFI/68 FIV) (FCV)

Capsid protein VP1 (CP) (Coat protein) (Protein 73 kDa)

CAPSD_FCVF4
Feline calicivirus (strain Japanese F4) (FCV)

Capsid protein VP1 (CP) (Coat protein) (Protein 73 kDa)

CAPSD_FCVF9
Feline calicivirus (strain F9) (FCV)

Capsid protein VP1 (CP) (Coat protein) (Protein 73 kDa)

pdb 6GSI

CAPSD_FHV
Flock house virus (FHV)

Capsid protein alpha (EC 3.4.23.44)

pdb 3LOB; 4FSJ; 4FTB; 4FTE; 4FTS; 6ITB; 6ITF

CAPSD_HASV2
Human astrovirus-2 (HAstV-2)

Capsid polyprotein VP90

pdb 5KOU; 5KOV

CAPSD_HASV3
Human astrovirus-3 (HAstV-3)

Capsid polyprotein VP90

CAPSD_HASV4
Human astrovirus-4 (HAstV-4)

Capsid polyprotein VP90

CAPSD_HASV5
Human astrovirus-5 (HAstV-5)

Capsid polyprotein VP90

CAPSD_HASV6
Human astrovirus-6 (HAstV-6)

Capsid polyprotein VP90

CAPSD_HASV7
Human astrovirus-7 (HAstV-7)

Capsid polyprotein VP90

CAPSD_HASV8
Human astrovirus-8 (HAstV-8)

Capsid polyprotein VP90

pdb 3QSQ; 5IBV; 7RK1; 7RK2

CAPSD_HASVA
Human astrovirus VA1 (HAstV-VA1) (Mamastrovirus 9)

Capsid polyprotein VP86

pdb 8UFN; 8UFO

CAPSD_KYMVJ
Kennedya yellow mosaic virus (strain Jervis bay) (KYMV)

Capsid protein (Coat protein) (Virion protein)

CAPSD_LORDV
Lordsdale virus (strain GII/Human/United Kingdom/Lordsdale/1993) (Human enteric calicivirus) (Hu/NV/LD/1993/UK)

Capsid protein VP1 (CP) (Coat protein) (VP1)

CAPSD_MASV1
Mink astrovirus 1 (MAstV-1)

Capsid polyprotein VP86

CAPSD_OASV1
Ovine astrovirus 1 (OAstV-1)

Capsid polyprotein VP86

CAPSD_OYMV
Ononis yellow mosaic virus

Capsid protein (Coat protein) (Virion protein)

CAPSD_PASV1
Porcine astrovirus 1 (PAstV-1)

Capsid polyprotein VP90

CAPSD_PAV
Pariacoto virus (PaV)

Capsid protein alpha (EC 3.4.23.44)

pdb 1F8V

CAPSD_PHMV
Physalis mottle virus (PhMV) (Belladonna mottle virus-Iowa)

Capsid protein (Coat protein) (Virion protein)

pdb 1E57; 1QJZ; 2WWS; 2XPJ

CAPSD_PLRV
Potato leafroll virus (PLrV)

Major capsid protein (Coat protein) (CP) (P3)

CAPSD_PLRVR
Potato leafroll virus (strain Potato/Canada/Rowhani/1979) (PLrV)

Major capsid protein (Coat protein) (CP) (P3)

CAPSD_PLRVW
Potato leafroll virus (strain Potato/Netherlands/Wageningen/1989) (PLrV)

Major capsid protein (Coat protein) (CP) (P3)

CAPSD_PSVJ
Peanut stunt virus (strain J) (PSV)
CAPSD_RHDVR
Rabbit calicivirus (Ra/LV/RHDV/RCV/1995/IT) (RHDV)

Subgenomic capsid protein VP60

CAPSD_SMSV1
San Miguel sea lion virus serotype 1 (SMSV-1) (SMSV serotype 1)

Capsid protein VP1 (CP) (Capsid protein) (Coat protein)

CAPSD_SMSV4
San Miguel sea lion virus serotype 4 (SMSV-4) (SMSV serotype 4)

Capsid protein VP1 (CP) (Capsid protein) (Coat protein)

pdb 2GH8

CAPSD_SOUV3
Southampton virus (strain GI/Human/United Kingdom/Southampton/1991) (SHV) (Hu/NV/SHV/1991/UK)

Capsid protein VP1 (CP) (Coat protein)

CAPSD_TBSVB
Tomato bushy stunt virus (strain BS-3) (TBSV)

Capsid protein (Coat protein) (p41)

pdb 2TBV

CAPSD_TNVD
Tobacco necrosis virus (strain D) (TNV-D)

Capsid protein (p30)

CAPSD_TYMVA
Turnip yellow mosaic virus (isolate Australia)

Capsid protein (Coat protein) (Virion protein)

pdb 2FZ1; 2FZ2

8 entries

RNA2 polyprotein (119kDa protein) (Genome polyprotein M)

Select_allDeselect_all
POL2_BBWVS
Broad bean wilt virus 1 (strain Spinach/United States/ATCC PV-132/1963) (BBWV-1) reference strain
POL2_CPMVS
Cowpea mosaic virus (strain SB) (CPMV) reference strain

RNA2 polyprotein (Genome polyprotein M) (M RNA polyprotein) (Middle component RNA polyprotein) (P2)

pdb 1NY7; 2BFU; 5A32; 5A33; 5FMO

POL2_APMV
Andean potato mottle virus (APMV)

RNA2 polyprotein (Genome polyprotein M) (M RNA polyprotein) (Middle component RNA polyprotein) (P2)

POL2_BBWV2
Broad bean wilt virus 2 (BBWV-2)
POL2_BPMV
Bean-pod mottle virus (strain Kentucky G7) (BPMV)

RNA2 polyprotein (Genome polyprotein M) (M RNA polyprotein) (Middle component RNA polyprotein) (P2)

pdb 1BMV; 1PGL; 1PGW

POL2_CPSMV
Cowpea severe mosaic virus (strain DG) (CPSMV)

RNA2 polyprotein (Genome polyprotein M) (M RNA polyprotein) (Middle component RNA polyprotein) (P2)

POL2_RCMV
Red clover mottle virus (RCMV)

RNA2 polyprotein (Genome polyprotein M) (M RNA polyprotein) (Middle component RNA polyprotein) (P2)

POL2_SQMVM
Squash mosaic virus (strain melon) (SqMV)

RNA2 polyprotein (Genome polyprotein M) (M RNA polyprotein) (Middle component RNA polyprotein) (P2)