Peduoviridae (taxid:2946167)

VIRION

Non-enveloped, head-tail structure with Myo-type morphology. The icosahedral head is about 60 nm, with a T=7 dextro symmetry , composed of 72 capsomers. The tail is contractile, about 135 x 18 nm, has 6 short kinked fibers.

GENOME

Linear, dsDNA genome of about 34 kb, encoding for approximately 45 proteins. The genome has cohesive ends (cos sites).

GENE EXPRESSION

Genes are transcribed by operons.

ENZYMES

Serine protease (Peptidase S73)
Integrase

REPLICATION

CYTOPLASMIC

Adsorption: the phage attaches to the target cell through its tail fibers.
Ejection of the viral DNA into host cell cytoplasm by contraction of the tail sheath.
Transcription and translation of early genes.
Synthesis of linear concatemers copies of viral DNA by rolling circle. Transcription and translation of late genes.
Assembly of an empty procapsid and packaging of the genome.
Viral tail fibers assembly and viral tail assembly.
Mature virions are released from the cell by lysis.

DB LINKS

TAXONOMY Group I: dsDNA viruses

Realm:	Duplodnaviria
Kingdom:	Heunggongvirae
Phylum:	Uroviricota
Class:	Caudoviricetes
Order:	Unassigned
Family:	Peduoviridae
Genus:	Peduovirus

VIRUS

REFERENCE STRAINS Enterobacteria phage P2
Sequence | Genome assembly | Proteome
Haemophilus phage HP1
Sequence | Genome assembly | Proteome

Host

NATURAL HOSTS Bacteria.

Ecology and disease

GEOGRAPHY Worldwide

TRANSMISSION Passive diffusion through medium

ANTIVIRAL DRUGS None

Matching UniProtKB/Swiss-Prot entries

(all links/actions below point to uniprot.org website)

99 entries grouped by protein

reorder by strain

1 entry

Putative antiholin (Protein lysA)

1 entry

Putative baseplate protein gp29 (Gene 29 protein) (Gp29)

2 entries

Probable baseplate hub protein (Gene D protein) (GpD)

BPD_BP186

Escherichia phage 186 (Bacteriophage 186) reference strain

Probable baseplate hub protein (Gene D protein) (GpD) (Late control gene D protein)

BPD_BPP2

Escherichia phage P2 (Bacteriophage P2) reference strain

1 entry

Baseplate protein I (Gene I protein) (GpI)

1 entry

Baseplate protein J (Gene J protein) (GpJ)

1 entry

Baseplate protein W (Gene W protein) (GpW)

1 entry

Baseplate protein X (Gene X protein) (GpX)

3 entries

Capsid proteins (GpN)

CAPSD_BPHC1

Haemophilus phage HP1 (strain HP1c1) (Bacteriophage HP1) reference strain

Major capsid protein (Gene product 18) (gp18) (Major head protein) (ORF18)

CAPSD_BPP2

Escherichia phage P2 (Bacteriophage P2) reference strain

7JW1

CAPSD_BPSK2

Serratia phage KSP20 (Serratia marcescens bacteriophage KSP20)

Major capsid protein (Major capsid protein B) (Major head protein)

1 entry

Uncharacterized 8.4 kDa protein

1 entry

Uncharacterized 8.8 kDa protein in GpA 5'region

1 entry

Uncharacterized 8.5 kDa protein in gpA 5'region

1 entry

Uncharacterized exonuclease CP81 (EC 3.1.-.-)

1 entry

Uncharacterized 10.4 kDa protein in GpA 5'region

1 entry

Uncharacterized 37.8 kDa protein in gpa 5'region

1 entry

DNA N-6-adenine-methyltransferase (DAM) (EC 2.1.1.72) (ORF13) (Orphan methyltransferase M.HinHP1Dam) (M.HinHP1Dam)

2 entries

Endolysin (EC 4.2.2.n2) (Lysis protein) (Lysozyme) (Protein gpK) (Transglycosylase)

ENLYS_BPHC1

Haemophilus phage HP1 (strain HP1c1) (Bacteriophage HP1) reference strain

SAR-endolysin (EC 3.2.1.17) (Endolysin) (Lysis protein) (Lysozyme) (Muramidase)

ENLYS_BPP2

Escherichia phage P2 (Bacteriophage P2) reference strain

1 entry

Probable tail fiber protein (Gene product 31) (gp31) (ORF31)

1 entry

Probable tail fiber protein (GpH)

2 entries

Holin

HOLIN_BPHC1

Haemophilus phage HP1 (strain HP1c1) (Bacteriophage HP1) reference strain

Holin (Pinholin)

HOLIN_BPP2

Escherichia phage P2 (Bacteriophage P2) reference strain

2 entries

Probable portal protein (GpQ)

PORTL_BPHC1

Haemophilus phage HP1 (strain HP1c1) (Bacteriophage HP1) reference strain

Probable portal protein (ORF15)

PORTL_BPP2

Escherichia phage P2 (Bacteriophage P2) reference strain

1 entry

Replication protein (EC 3.1.-.-)

1 entry

Repressor protein C

2 entries

Repressor protein CI

RPC1_BP186

Escherichia phage 186 (Bacteriophage 186) reference strain

2FJR; 2FKD; 7JVT

RPC1_BPHC1

Haemophilus phage HP1 (strain HP1c1) (Bacteriophage HP1) reference strain

1 entry

Regulatory protein CII

2 entries

Capsid assembly scaffolding protein (Gene product 17) (Gp17) (Head morphogenesis protein) (Scaffold protein)

SCAF_BPHC1

Haemophilus phage HP1 (strain HP1c1) (Bacteriophage HP1) reference strain

SCAF_BPP2

Escherichia phage P2 (Bacteriophage P2) reference strain

Capsid assembly scaffolding protein (Gene product O) (GpO) (Head morphogenesis protein) (Scaffold protein)

1 entry

Probable spanin, inner membrane subunit (i-spanin) (Protein lysB)

1 entry

Probable spanin, outer lipoprotein subunit (Protein lysC)

1 entry

Spike protein (Baseplate assembly protein gpV) (Gene V protein) (GpV)

1 entry

Putative tail protein gp30 (Gene product 30) (gp30)

1 entry

Major tail tube protein (GpFII-like protein) (Virion protein C)

1 entry

Tail assembly protein E (Gene product E) (gpE) (Tail assembly chaperone) (TAC)

1 entry

Tail assembly protein E' (Gene product E') (gpE') (Tail assembly chaperone) (TAC)

1 entry

Probable tail fiber assembly protein (GpG)

2 entries

Probable tape measure protein (TMP) (Gene product 27) (gp27)

TMP_BPHC1

Haemophilus phage HP1 (strain HP1c1) (Bacteriophage HP1) reference strain

TMP_BPP2

Escherichia phage P2 (Bacteriophage P2) reference strain

Probable tape measure protein (TMP) (Gene product T) (gpT)

2 entries

Major tail sheath protein (Virion protein A)

TSP_BPP2

Escherichia phage P2 (Bacteriophage P2) reference strain

Tail sheath protein (TSP) (Major tail sheath protein) (Protein FI)

TSP_BPSK2

Serratia phage KSP20 (Serratia marcescens bacteriophage KSP20)

1 entry

Tail tube protein (TTP) (Protein FII)

1 entry

SOS operon TUM protein (ORF95 protein) (Protein TUM95)

1 entry

Protein apl

2 entries

Regulatory protein cox

VCOX_BPHC1

Haemophilus phage HP1 (strain HP1c1) (Bacteriophage HP1) reference strain

VCOX_BPP2

Escherichia phage P2 (Bacteriophage P2) reference strain

4LHF

1 entry

Protein dhr

1 entry

Protein fil

3 entries

Integrase (EC 2.7.7.-) (EC 3.1.-.-)

VINT_BP186

Escherichia phage 186 (Bacteriophage 186) reference strain

VINT_BPHC1

Haemophilus phage HP1 (strain HP1c1) (Bacteriophage HP1) reference strain

1AIH

VINT_BPP2

Escherichia phage P2 (Bacteriophage P2) reference strain

5C6K; 5DOR

1 entry

Late control protein ogr

1 entry

Old nuclease (EC 3.1.11.3) (Exodeoxyribonuclease Old) (Overcoming lysogenization defect protein) (Old)

2 entries

Replication gene A protein (EC 3.1.-.-) (GpA)

VPA_BP186

Escherichia phage 186 (Bacteriophage 186) reference strain

VPA_BPP2

Escherichia phage P2 (Bacteriophage P2) reference strain

2 entries

Late control gene B protein (GpB)

VPB_BP186

Escherichia phage 186 (Bacteriophage 186) reference strain

VPB_BPP2

Escherichia phage P2 (Bacteriophage P2) reference strain

Replication gene B protein (GpB)

2 entries

Head completion/stabilization protein (GpL)

VPL_BPHC1

Haemophilus phage HP1 (strain HP1c1) (Bacteriophage HP1) reference strain

Probable head completion/stabilization protein (ORF20)

VPL_BPP2

Escherichia phage P2 (Bacteriophage P2) reference strain

2 entries

Probable terminase, endonuclease subunit (ORF19)

VPM_BPHC1

Haemophilus phage HP1 (strain HP1c1) (Bacteriophage HP1) reference strain

VPM_BPP2

Escherichia phage P2 (Bacteriophage P2) reference strain

Terminase, endonuclease subunit (GpM)

2 entries

Probable terminase, ATPase subunit (ORF16)

VPP_BPHC1

Haemophilus phage HP1 (strain HP1c1) (Bacteriophage HP1) reference strain

VPP_BPP2

Escherichia phage P2 (Bacteriophage P2) reference strain

Terminase, ATPase subunit (GpP)

1 entry

Tail completion protein R (GpR)

1 entry

Tail completion protein S (GpS)

1 entry

Uncharacterized 23.2 kDa protein in int-C1 intergenic region (ORF1)

1 entry

Uncharacterized 7.9 kDa protein in int-C1 intergenic region (ORF16) (ORF2)

1 entry

Uncharacterized 8.9 kDa protein in int-C1 intergenic region (ORF17) (ORF3)

1 entry

Uncharacterized 8.9 kDa protein in int-C1 intergenic region (ORF18) (ORF4)

1 entry

Uncharacterized 19.2 kDa protein in cox-rep intergenic region (ORF21) (ORF5)

1 entry

Uncharacterized 14.1 kDa protein in cox-rep intergenic region (ORF22) (ORF6)

1 entry

Uncharacterized 7.3 kDa protein in cox-rep intergenic region (ORF23) (ORF7)

1 entry

Uncharacterized 10.8 kDa protein in cox-rep intergenic region (ORF24) (ORF8)

1 entry

Uncharacterized 9.7 kDa protein in cox-rep intergenic region (ORF25) (ORF9)

1 entry

Uncharacterized 11.1 kDa protein in rep-hol intergenic region (ORF10)

1 entry

Uncharacterized 8.3 kDa protein in rep-hol intergenic region (ORF11)

1 entry

Uncharacterized 18.2 kDa protein in rep-hol intergenic region (ORF12)

1 entry

Uncharacterized 14.9 kDa protein in rep-hol intergenic region (ORF14)

1 entry

Uncharacterized 19.2 kDa protein in rep-hol intergenic region (ORF21)

1 entry

Uncharacterized 26.0 kDa protein in rep-hol intergenic region (ORF22)

1 entry

Putative tail sheath protein (ORF23)

1 entry

Putative tail tube protein (ORF24)

1 entry

Uncharacterized 13.1 kDa protein in lys 3'region (ORF25)

1 entry

Uncharacterized 11.3 kDa protein in lys 3'region (ORF26)

1 entry

Uncharacterized 12.7 kDa protein in lys 3'region (ORF28)

1 entry

Uncharacterized 23.3 kDa protein in lys 3'region (ORF32)

1 entry

Uncharacterized 28.3 kDa protein in lys 3'region (ORF33)

1 entry

Uncharacterized 20.8 kDa protein in lys 3'region (ORF34)

1 entry

Uncharacterized 58.7 kDa protein in lys 3'region (ORF35)

1 entry

Uncharacterized 8.3 kDa protein in GpA 5'region (ORF1)

1 entry

Uncharacterized 11.3 kDa protein in GpA 5'region (ORF2)

1 entry

Uncharacterized 8.2 kDa protein in gpA 5'region (ORF3)

1 entry

Uncharacterized 10.2 kDa protein in GpA 5'region (ORF4)

1 entry

Uncharacterized 12.9 kDa protein in GpA 3'region (ORF5)

1 entry