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Totiviridae (taxid:11006)

VIRION

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Non enveloped, icosahedral virion composed of a single capsid protein (CP), about 40 nm in diameter. The capsid has a T=2* icosahedral symmetry.
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GENOME

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Linear dsRNA genome of 4.6-6.7 kb. Contains 2 overlapping ORFs gag and pol, respectively encoding CP and RdRp. Some totiviruses contain a third small 5'-proximal potential ORF.

GENE EXPRESSION

The dsRNA genome is never completely uncoated, to prevent activation of antiviral state by the cell in response to dsRNA. The viral polymerase synthesizes a mRNA, which is translocated to the cell cytoplasm where it is translated.
Translation is initiated on a unique internal ribosome entry site (IRES) element situated at the 5'-UTR.
In most totiviruses, the plus-strand viral transcript is flanked by a 5'untranslated region (5'-UTR) and a 3'-UTR and directs the translation of a major CP (Gag) and a minor fusion protein CP-RdRP (Gag-Pol) via a -1 ribosomal frameshift.
In other totiviruses (e.g. Hv190SV), RDRP is detected only as a separate, non-fused polypeptide and may be expressed through a termination-reinitiation mechanism.

ENZYMES

REPLICATION

CYTOPLASMIC

  1. Virus either remains intracellular (totivirus) or attachement to host receptors mediates endocytosis of virus into host cell (Giardiavirus).
  2. Transcription of the dsRNA genome by viral polymerase occurs inside the virion, so that dsRNA is never exposed to the cytoplasm. This plus-strand transcript is used as template for translation.
  3. (+)RNAs are encapsidated in a sub-viral particle, in which they are transcribed to give RNA (-) molecules with which they become base-paired to produce dsRNA genomes.
  4. Mature virions are transmitted to new cell during cell division, sporogenesis, cell fusion (totivirus) or are released from the host cell (Giardiavirus).

Matching UniProtKB/Swiss-Prot entries

(all links/actions below point to uniprot.org website)

13 entries grouped by strain

3 entries

Leishmania RNA virus 1 - 1 (isolate Leishmania guyanensis) (LRV-1-1) reference strain

Select_allDeselect_all
CAPSD_LRVLG Major capsid protein (Major coat protein)
RDRP_LRVLG Probable RNA-directed RNA polymerase (EC 2.7.7.48)
ORF1_LRVLG Putative ORF1 protein

2 entries

Giardia lamblia virus (isolate Wang) (GLV) reference strain

Select_allDeselect_all
CAPSD_GLVWB Major capsid protein (Gag protein) (Major coat protein)
RDRP_GLVWB Probable RNA-directed RNA polymerase (EC 2.7.7.48) (Gag-Pol protein)

2 entries

Helminthosporium victoriae virus-190S (Hv190SV) reference strain

Select_allDeselect_all
CAPSD_HV19S Major capsid protein (Major coat protein)
RDRP_HV19S Probable RNA-directed RNA polymerase (EC 2.7.7.48)

2 entries

Saccharomyces cerevisiae virus L-A (ScV-L-A) (ScVL1) reference strain

Select_allDeselect_all
GAG_SCVLA Major capsid protein (Gag protein) (Major coat protein)
RDRP_SCVLA Probable RNA-directed RNA polymerase (EC 2.7.7.48) (Gag-Pol protein)

2 entries

Saccharomyces cerevisiae virus L-BC (ScV-L-BC) (ScVLa) reference strain

Select_allDeselect_all
RDRP_SCVLB Probable RNA-directed RNA polymerase (EC 2.7.7.48) (Gag-Pol protein)
GAG_SCVLB Major capsid protein (Gag protein) (Major coat protein)

1 entry

Ustilago maydis P4 virus (UmV4) (UmV-P4)

KP4T_UMV4 KP4 killer toxin (Fungal toxin KP4) (Killer protein 4)

1 entry

Ustilago maydis P6 virus (UmV6) (UmV-P6)

KP6T_UMV6 KP6 killer toxin (Killer protein 6) [Cleaved into: KP6 killer toxin subunit alpha (VP10); KP6 killer ...
These structures were created with the help of Colabfold by Jason Nomburg, Nathan Price and Jennifer Doudna (ModelArchive).

Armigeres subalbatus virus SaX06-AK20 taxid:556524

Protein ModelArchive
Coat protein ma-jd-viral-55316
RNA-directed RNA polymerase (EC 2.7.7.48) ma-jd-viral-19711

Drosophila melanogaster totivirus SW-2009a taxid:663282

Protein ModelArchive
RNA-directed RNA polymerase (EC 2.7.7.48) ma-jd-viral-19707
Structural protein ma-jd-viral-55315

Golden shiner totivirus taxid:1856030

Protein ModelArchive
RNA-directed RNA polymerase (EC 2.7.7.48) ma-jd-viral-19714

Penicillium aurantiogriseum totivirus 1 taxid:1755467

Protein ModelArchive
Coat protein ma-jd-viral-15415
RNA-directed RNA polymerase (EC 2.7.7.48) ma-jd-viral-19847

Phlebiopsis gigantea mycovirus dsRNA 1 taxid:349681

Protein ModelArchive
RNA-directed RNA polymerase (EC 2.7.7.48) ma-jd-viral-57314

Piscine myocarditis virus AL V-708 taxid:912320

Protein ModelArchive
Coat protein ma-jd-viral-52191
RNA-directed RNA polymerase (EC 2.7.7.48) ma-jd-viral-19528
Structural protein ma-jd-viral-65321

Saccharomyces kudriavzevii virus L-A1 taxid:1921825

Protein ModelArchive
Major coat protein ma-jd-viral-21431

Tianjin totivirus taxid:1163537

Protein ModelArchive
RNA-directed RNA polymerase (EC 2.7.7.48) ma-jd-viral-19715