Peduovirus (taxid:140410)
VIRION
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Non-enveloped, head-tail structure. The icosahedral head is about 60 nm, with a T=7 dextro symmetry , composed of 72 capsomers. The tail is contractile, about 135 x 18 nm, has 6 short kinked fibers.
GENOME
Linear, dsDNA genome of about 34 kb, encoding for approximately 45 proteins. The genome has cohesive ends (cos sites).
GENE EXPRESSION
Genes are transcribed by operons.
REPLICATION
CYTOPLASMIC
- Adsorption: the phage attaches to the target cell through its tail fibers.
- Ejection of the viral DNA into host cell cytoplasm by contraction of the tail sheath.
- Transcription and translation of early genes.
- Synthesis of linear concatemers copies of viral DNA by rolling circle. Transcription and translation of late genes.
- Assembly of an empty procapsid and packaging of the genome.
- Viral tail fibers assembly and viral tail assembly.
- Mature virions are released from the cell by lysis.
Altaira D. Dearborn, Pasi Laurinmaki, Preethi Chandramouli, Cynthia M. Rodenburg, Sifang Wang, Sarah J. Butcher, Terje Dokland
J. Struct. Biol. June 2012; 178: 215?224
Matching UniProtKB/Swiss-Prot entries
(all links/actions below point to uniprot.org website)39 entries grouped by protein
1 entry
Putative antiholin (Protein lysA)
1 entry
Probable baseplate hub protein (Gene D protein) (GpD)
1 entry
Baseplate protein I (Gene I protein) (GpI)
1 entry
Baseplate protein J (Gene J protein) (GpJ)
1 entry
Baseplate protein W (Gene W protein) (GpW)
1 entry
Baseplate protein X (Gene X protein) (GpX)
1 entry
Capsid proteins (GpN)
1 entry
Endolysin (EC 4.2.2.n2) (Lysis protein) (Lysozyme) (Protein gpK) (Transglycosylase)
1 entry
Probable tail fiber protein (GpH)
1 entry
Holin
1 entry
Probable portal protein (GpQ)
1 entry
Repressor protein C
1 entry
Capsid assembly scaffolding protein (Gene product O) (GpO) (Head morphogenesis protein) (Scaffold protein)
1 entry
Probable spanin, inner membrane subunit (i-spanin) (Protein lysB)
1 entry
Probable spanin, outer lipoprotein subunit (Protein lysC)
1 entry
Spike protein (Baseplate assembly protein gpV) (Gene V protein) (GpV)
1 entry
Tail assembly protein E (Gene product E) (gpE) (Tail assembly chaperone) (TAC)
1 entry
Tail assembly protein E' (Gene product E') (gpE') (Tail assembly chaperone) (TAC)
1 entry
Probable tail fiber assembly protein (GpG)
1 entry
Probable tape measure protein (TMP) (Gene product T) (gpT)
1 entry
Tail sheath protein (TSP) (Major tail sheath protein) (Protein FI)
1 entry
Tail tube protein (TTP) (Protein FII)
1 entry
Regulatory protein cox
1 entry
Integrase (EC 2.7.7.-) (EC 3.1.-.-)
1 entry
Late control protein ogr
1 entry
Old nuclease (EC 3.1.11.3) (Exodeoxyribonuclease Old) (Overcoming lysogenization defect protein) (Old)
1 entry
Replication gene A protein (EC 3.1.-.-) (GpA)
1 entry
Replication gene B protein (GpB)
1 entry
Head completion/stabilization protein (GpL)
1 entry
Terminase, endonuclease subunit (GpM)
1 entry
Terminase, ATPase subunit (GpP)
1 entry
Tail completion protein R (GpR)
1 entry
Tail completion protein S (GpS)
1 entry
Uncharacterized 8.3 kDa protein in GpA 5'region (ORF1)
1 entry
Uncharacterized 11.3 kDa protein in GpA 5'region (ORF2)
1 entry
Uncharacterized 8.2 kDa protein in gpA 5'region (ORF3)
1 entry
Uncharacterized 10.2 kDa protein in GpA 5'region (ORF4)
1 entry
Uncharacterized 12.9 kDa protein in GpA 3'region (ORF5)
1 entry