T=13 icosahedral capsid protein (kw:KW-1146)


image The capsid is composed 60 asymmetric units made of 13 proteins (T=13), for a total of 780 capsid proteins. These capsids are skewed, and are therefore described as either right- (dextro) or left- (laevo) handed.



image

Icosahedric triangulation number is calculated following Caspar and Klug system

Viral molecular biology Virion
Virus entry
Virus latency
Transcription and replication
Host-virus interactions
Virus exit
Icosahedric capsids Virus symmetry and T number
T=1
T=2*
T=3
Pseudo T=3
T=4
T=7
T=9
T=13
T=16
T=21/pseudo T=21
T=25/pseudo T=25
T=27/pseudo T=27
T=28
T=31/pseudo T=31
T=75 bacterial carboxysome
T=169
Links image
Uniprot Keyword: KW-1146
GO ontology: GO:0039621
Virus dsRNA
Birnaviridae
Cystoviridae
Reoviridae

Matching UniProtKB/Swiss-Prot entries

(all links/actions below point to uniprot.org website)

93 entries grouped by protein

3 entries

Major capsid protein (Capsid protein pb8) (Major head protein)

Select_allDeselect_all
CAPSD_BPGA1
Bacillus phage GA-1 (Bacteriophage GA-1) reference strain

Major capsid protein (Gene product 8) (gp8) (Major head protein)

CAPSD_BPPH6
Pseudomonas phage phi6 (Bacteriophage phi-6) reference strain

Major outer capsid protein (Protein P8)

pdb 5MUU; 6HY0

CAPSD_BPT5
Escherichia phage T5 (Enterobacteria phage T5) reference strain

pdb 5TJT; 6OKB; 6OMA; 6OMC

1 entry

Major capsid protein (Gene product 23) (Major head protein) (gp23)

CAPSH_BPT4
Enterobacteria phage T4 (Bacteriophage T4) reference strain

pdb 5VF3; 6UZC; 7VRT; 7VS5; 8GMO; 8T1X; 8T9R

12 entries

Structural polyprotein (PP)

Select_allDeselect_all
POLS_BSNV
Blotched snakehead virus (BSNV) (Channa lucius virus) reference strain

pdb 2GEF

POLS_DXV96
Drosophila x virus (isolate Chung/1996) (DXV) reference strain

pdb 6SHW; 6SI6

POLS_IPNVJ
Infectious pancreatic necrosis virus (strain Jasper) (IPNV) reference strain

pdb 3ZED

POLS_IBDV
Avian infectious bursal disease virus (IBDV) (Gumboro disease virus)

pdb 2GSY; 2IMU; 3FBM

POLS_IBDV5
Avian infectious bursal disease virus (strain 52/70) (IBDV) (Gumboro disease virus)
POLS_IBDVA
Avian infectious bursal disease virus (strain Australian 002-73) (IBDV) (Gumboro disease virus)
POLS_IBDVB
Avian infectious bursal disease virus (strain Chicken/Cuba/Soroa/1998) (IBDV) (Gumboro disease virus)

pdb 7VRN

POLS_IBDVC
Avian infectious bursal disease virus (strain Cu-1) (IBDV) (Gumboro disease virus)

pdb 1WCD; 1WCE

POLS_IBDVE
Avian infectious bursal disease virus (strain E) (IBDV) (Gumboro disease virus)
POLS_IBDVO
Avian infectious bursal disease virus (strain OH) (IBDV) (Gumboro disease virus)
POLS_IBDVS
Avian infectious bursal disease virus (strain STC) (IBDV) (Gumboro disease virus)
POLS_IPNVN
Infectious pancreatic necrosis virus (strain N1) (IPNV)

2 entries

Outer capsid protein VP4

Select_allDeselect_all
VP4_AQRVC
Aquareovirus C (isolate Golden shiner/USA/GSRV/1977) (AQRV-C) reference strain
VP4_AQRVG
Aquareovirus G (isolate American grass carp/USA/PB01-155/-) (AQRV-G) reference strain

75 entries

Outer capsid glycoprotein VP7

Select_allDeselect_all
VP7_AQRVC
Aquareovirus C (isolate Golden shiner/USA/GSRV/1977) (AQRV-C) reference strain

Outer capsid protein VP7

VP7_AQRVG
Aquareovirus G (isolate American grass carp/USA/PB01-155/-) (AQRV-G) reference strain

Outer capsid protein VP7

VP7_ROTHC
Rotavirus C (isolate RVC/Human/United Kingdom/Bristol/1989) (RV-C) reference strain
VP7_ROTJ1
Rotavirus X (strain RVX/Human/China/NADRV-J19/1997/GXP[X]) (RV ADRV-N) (Rotavirus (isolate novel adult diarrhea rotavirus-J19)) reference strain
VP7_ROTSH
Rotavirus A (isolate RVA/Monkey/South Africa/SA11-H96/1958/G3P5B[2]) (RV-A) (Simian Agent 11 (isolate SI/South Africa/H96/58)) reference strain
VP7_ROT18
Rotavirus A (isolate RVA/Cow/India/Hg18/2000/G15P[21]) (RV-A)
VP7_ROT41
Rotavirus A (isolate RVA/Human/Belgium/B4106/2000/G3P11[14]) (RV-A) (Rotavirus A (isolate B4106))

pdb 2LM7

VP7_ROT46
Rotavirus A (isolate RVA/Pig/Venezuela/A46/1985/G5P13[13]) (RV-A)
VP7_ROTA1
Rotavirus A (strain RVA/Turkey/Ireland/Ty-1/1978/G7P[17]) (RV-A)
VP7_ROTAD
Rotavirus A (strain RVA/Human/United States/D/1974/G1P1A[8]) (RV-A)
VP7_ROTAM
Rotavirus A (strain RVA/Human/United States/M/1976/G3P[X]) (RV-A)
VP7_ROTAP
Rotavirus A (isolate RVA/Cow/South/Africa/Offal agent/1965/G8P6[1]) (RV-A)
VP7_ROTB2
Rotavirus X (isolate RVX/Human/Bangladesh/NADRV-B219/2002/GXP[X]) (RV ADRV-N) (Rotavirus (isolate novel adult diarrhea rotavirus-B219))
VP7_ROTB4
Rotavirus A (strain RVA/Cow/United States/B641/XXXX/G6P7[5]) (RV-A)
VP7_ROTB5
Rotavirus A (isolate RVA/Cow/Thailand/A5/1988/G8P6[1]) (RV-A)
VP7_ROTB6
Rotavirus A (isolate RVA/Cow/Thailand/61A/1988/G10P7[5]) (RV-A)
VP7_ROTB9
Rotavirus A (isolate RVA/Cow/Germany/993/1983/G18P[17]) (RV-A)
VP7_ROTBA
Rotavirus A (isolate RVA/Cow/Thailand/A44/1988/G10P8[11]) (RV-A)
VP7_ROTBB
Rotavirus A (isolate RVA/Cow/United States/B223/1983/G10P8[11]) (RV-A)
VP7_ROTBJ
Rotavirus A (isolate RVA/Cow/Japan/KN-4/1983/G6P8[11]) (RV-A)
VP7_ROTBK
Rotavirus A (isolate RVA/Cow/Japan/KK3/1983/G10P8[11]) (RV-A)
VP7_ROTBN
Rotavirus A (strain RVA/Cow/United States/NCDV-Lincoln/1969/G6P6[1]) (RV-A) (Rotavirus A (strain Nebraska calf diarrhea virus))
VP7_ROTBS
Rotavirus C (isolate RVC/Cow/Japan/Shintoku/1991/G2P[3]) (RV-C)
VP7_ROTBT
Rotavirus A (isolate RVA/Cow/Argentina/T449/1992/G1P[X]) (RV-A)
VP7_ROTBU
Rotavirus A (strain RVA/Cow/United Kingdom/UK/1975/G6P7[5]) (RV-A)
VP7_ROTBV
Rotavirus A (isolate RVA/Cow/United States/VMRI/1988/G6P[5]) (RV-A)
VP7_ROTCC
Rotavirus A (strain RVA/Chicken/Ireland/Ch2/1979/G7P[X]) (RV-A) (Rotavirus A (strain Ch-2))
VP7_ROTD9
Rotavirus A (isolate RVA/Dog/United States/K9/1981/G3P5A[3]) (RV-A)
VP7_ROTE2
Rotavirus A (isolate RVA/Equine/United States/FI-23/1981/G14P4[12]) (RV-A) (Rotavirus A (strain FI23))
VP7_ROTEL
Rotavirus A (isolate RVA/Equine/United Kingdom/L338/1988/G13P12[18]) (RV-A)
VP7_ROTEO
Rotavirus A (isolate RVA/Equine/Japan/HO-5/1980/G3P[X]) (RV-A)
VP7_ROTGA
Rotavirus B (isolate RVB/Human/China/ADRV/1982) (RV-B) (Rotavirus B (isolate adult diarrhea rotavirus))
VP7_ROTGI
Rotavirus B (isolate RVB/Rat/United States/IDIR/1984/G1P[X]) (RV-B) (Rotavirus B (isolate infectious diarrhea of infant rats))
VP7_ROTH3
Rotavirus A (strain RVA/Human/Japan/AU-1/1982/G3P3[9]) (RV-A)
VP7_ROTH4
Rotavirus A (strain RVA/Human/Australia/RV-4/1977/G1P1A[8]) (RV-A) (Rotavirus A (strain RV4))
VP7_ROTH6
Rotavirus A (strain RVA/Human/Indonesia/69M/1980/G8P4[10]) (RV-A)
VP7_ROTH7
Rotavirus A (isolate RVA/Human/United Kingdom/A64/1987/G10P11[14]) (RV-A)
VP7_ROTH9
Rotavirus A (isolate RVA/Human/-/RK9/XXXX/GXP[X]) (RV-A)
VP7_ROTHA
Rotavirus A (isolate RVA/Human/Australia/Hu5/1977/G2P[X]) (RV-A) (Rotavirus A (isolate Hu/5))
VP7_ROTHB
Rotavirus A (strain RVA/Human/Indonesia/B37/XXXX/G8P[X]) (RV-A)
VP7_ROTHD
Rotavirus A (strain RVA/Human/United States/DS-1/1976/G2P1B[4]) (RV-A) (Rotavirus A (strain DS1))
VP7_ROTHE
Rotavirus C (isolate RVC/Human/Japan/88-220/1988) (RV-C)
VP7_ROTHH
Rotavirus A (strain RVA/Human/Venezuela/HN126/1983/G2P[X]) (RV-A) (Rotavirus A (strain HN-126))
VP7_ROTHJ
Rotavirus A (strain RVA/Human/Japan/K8/1977/G1P3A[9]) (RV-A)
VP7_ROTHK
Rotavirus A (strain RVA/Human/Japan/KU/1995/G1P1A[8]) (RV-A)
VP7_ROTHL
Rotavirus A (strain RVA/Human/Philippines/L26/1987/G12P1B[4]) (RV-A)
VP7_ROTHM
Rotavirus A (strain RVA/Human/Venezuela/M37/1982/G1P2A[6]) (RV-A)
VP7_ROTHO
Rotavirus A (strain RVA/Human/Japan/MO/1982/G3P1A[8]) (RV-A)
VP7_ROTHP
Rotavirus A (strain RVA/Human/United States/P/1974/G3P1A[8]) (RV-A)
VP7_ROTHQ
Rotavirus A (isolate RVA/Human/Thailand/Mc35/1992/G10P11[14]) (RV-A)
VP7_ROTHS
Rotavirus A (strain RVA/Human/Japan/S2/1980/G2P1B[4]) (RV-A)
VP7_ROTHT
Rotavirus A (strain RVA/Human/United Kingdom/ST3/1975/G4P2A[6]) (RV-A) (Rotavirus A (strain St. Thomas 3))
VP7_ROTHU
Rotavirus A (isolate RVA/Human/India/116E/1986/G9P8[11]) (RV-A)
VP7_ROTHV
Rotavirus A (isolate RVA/Human/Italy/VA70/1975/G4P1A[8]) (RV-A)
VP7_ROTHW
Rotavirus A (strain RVA/Human/United States/Wa/1974/G1P1A[8]) (RV-A)
VP7_ROTHX
Rotavirus A (isolate RVA/Human/Australia/A91a/1991/G1P[X]) (RV-A)
VP7_ROTKU
Rotavirus A (strain RVA/Human/Japan/KUN/1980/G2P1B[4]) (RV-A)
VP7_ROTMB
Rotavirus A (isolate RVA/Mouse/United States/Eb/1982/G16P10[16]) (RV-A)
VP7_ROTME
Rotavirus A (isolate RVA/Mouse/Brazil/EHP/1981/G16P[20]) (RV-A)
VP7_ROTP2
Rotavirus A (isolate RVA/Pig/Australia/AT/1976/G3P9[7]) (RV-A) (Rotavirus A (isolate AT/76))
VP7_ROTP3
Rotavirus A (isolate RVA/Pig/Australia/CRW-8/1987/G3P9[7]) (RV-A)
VP7_ROTP5
Rotavirus A (strain RVA/Pig/United States/OSU/1977/G5P9[7]) (RV-A) (Rotavirus A (strain Ohio State University))
VP7_ROTP6
Rotavirus A (isolate RVA/Pig/Australia/TFR-41/1987/G5P9[7]) (RV-A)
VP7_ROTPB
Rotavirus A (isolate RVA/Pig/Australia/BEN144/1989/G4P2B[6]) (RV-A)
VP7_ROTPC
Rotavirus C (strain RVC/Pig/United States/Cowden/1980) (RV-C)
VP7_ROTPG
Rotavirus A (strain RVA/Pig/United States/Gottfried/1983/G4P2B[6]) (RV-A)
VP7_ROTPK
Rotavirus A (strain RVA/Pig/Russia/K/1987) (RV-A)
VP7_ROTPM
Rotavirus A (isolate RVA/Pig/Australia/BMI-1/1989/G4P9[7]) (RV-A)
VP7_ROTPY
Rotavirus A (strain RVA/Pig/Mexico/YM/1983/G11P9[7]) (RV-A)
VP7_ROTRF
Rotavirus A (strain RVA/Cow/France/RF/1975/G6P6[1]) (RV-A)
VP7_ROTRH
Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3]) (RV-A)

pdb 3FMG; 3GZT; 4V7Q; 6WXE; 6WXF; 6WXG; 8UK2; 8UK3

VP7_ROTS1
Rotavirus A (strain RVA/SA11-Both/G3P5B[2]) (RV-A) (Simian Agent 11 (strain Both))
VP7_ROTW3
Rotavirus A (strain RVA/Cow/United States/WC3/1981/G6P7[5]) (RV-A) (Rotavirus (strain Wistar calf 3))
VP7_ROTWI
Rotavirus A (isolate RVA/Human/United States/WI61/1983/G9P1A[8]) (RV-A)
VP7_ROTYO
Rotavirus A (strain RVA/Human/Japan/YO/1977/G3P1A[8]) (RV-A)