Nanoviridae (taxid:251095)
VIRION
Non-enveloped, round, T=1 icosahedral symmetry, about 18-19 nm in diameter.
GENOME
Multipartite ssDNA genome (+) composed of 6 to 8 circular segments about 1kb in size. Each ssDNA segment have a common stem-loop region and are encapsidated in a separate particle
.
In addition to genomic DNA, satellite-like DNA are commonly found, usually encoding for Rep proteins. These satellite-Rep proteins are only able to initiate replication of their genomic DNA, unlike genomic Rep which promotes replication of all 6-8 viral genomic ssDNAs.
GENE EXPRESSION
Each ssDNA genome segment is monocistronic. In rare cases a gene encodes for two overlapping ORFs.
ENZYMES
REPLICATION
NUCLEAR
- Virus penetrates into the host cell.
- Uncoating, the viral ssDNA genome penetrates into the nucleus.
- The ssDNA is converted into dsDNA with the participation of cellular factors.
- Bidirectional dsDNA transcription from the IR promoter produces viral mRNAs and translation of viral proteins.
- Replication is initiated by cleavage of the (+)strand by REP, and occurs by rolling circle producing ssDNA genomes.
- These newly synthesized ssDNA can either
a) be converted to dsDNA and serve as a template for transcription/replication
b) be encapsidated by CP and form virions that will be released in the extracellular space. c) be transported outside the nucleus, to a neighboring cell through plasmodesmata (cell-cell movement) with the help of viral movement proteins.
Host-virus interaction
Cell-cycle modulation
Nanoviruses Clink protein is probably involved in binding and inhibiting host retinoblastoma protein. Inhibition of retinoblastoma protein induces transition from the G1 to S phase for optimal replication conditions.
Matching UniProtKB/Swiss-Prot entries
(all links/actions below point to uniprot.org website)39 entries grouped by protein
7 entries
Capsid protein (CP) (Coat protein)
5 entries
Cell cycle link protein (Clink)
5 entries
Master replication protein (M-Rep) (EC 2.7.7.-) (EC 3.1.21.-) (EC 3.6.1.-)
5 entries
Putative movement protein (MP)
5 entries
Putative nuclear shuttle protein
4 entries
Protein U1
3 entries
Protein U2
1 entry
Uncharacterized protein U3
3 entries
Protein U4
1 entry
Uncharacterized 5 kDa protein in M-Rep ORF (Uncharacterized protein U5)
Babuvirus abacae taxid:438782
Black medic leaf roll virus taxid:2038729
Faba bean necrotic stunt virus taxid:283824
Faba bean necrotic yellows virus taxid:59817
Protein | ModelArchive |
Capsid protein (Coat protein) | ma-jd-viral-27219 |
Faba bean necrotic yellows virus (isolate Egyptian EV1-93) taxid:291603
Milk vetch dwarf virus taxid:67585
Protein | ModelArchive |
Movement protein | ma-jd-viral-63678 |