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Realm: Monodnaviria

Viruses from this realm are viruses with circular single-stranded DNA genomes and most of them encode a rolling circle replication initiation endonuclease (Rep). The capsids are either helical or icosahedral with T=1 symmetry (single jelly roll (SJR)).

CRESS DNA viruses have evolved on three independent occasions from bacterial rolling-circle replicating plasmids . Due to the simplicity and universal replication mechanism, these viruses are very versatile and can jump to new hosts and evolve rapidly.

Kingdom: Trapavirae Phylum: Saleviricota (Pol, Rep or nothing; no capsid) Class: Huolimaviricetes Order: Haloruvirales Pleolipoviridae (Rep, no pol) Alphapleolipovirus (No Rep, no pol) Betapleolipovirus (No Rep, DNApol B) Gammapleolipovirus Kingdom: Loebvirae Phylum: Hofneiviricota (PFAM Ino-type Rep; M-13 type capsid) Class: Faserviricetes Order: Tubulavirales Inoviridae Inovirus 22 genera Affertcholeramvirus Bifilivirus Capistrivirus Coriovirus Fibrovirus Habenivirus Infulavirus Lineavirus Parhipatevirus Primolicivirus Psecadovirus Restivirus Saetivirus Scuticavirus Staminivirus Subteminivirus Tertilicivirus Thomixvirus Versovirus Vicialiavirus Villovirus Xylivirus Paulinoviridae Bifilivirus Thomixvirus Plectroviridae (Rep endonuclease, or transposase) Plectrovirus Suturavirus Vespertilliovirus Kingdom: Sangervirae Phylum: Phixviricota (PFAM Micro-type Rep; Single jelly roll capsid) Class: Malgrandaviricetes Order: Petitvirales Microviridae Bullavirinae Alphatrevirus Gequatrovirus Sinsheimervirus Gokushovirinae Bdellomicrovirus Chlamydiamicrovirus Enterogokushovirus Spiromicrovirus

Kingdom: Shotokuvirae Phylum: Cossaviricota Class: Mouviricetes (PFAM Protein-primed DNApol B; Single jelly roll capsid) Order: Polivirales Bidnaviridae Bidensovirus Class: Papovaviricetes dsDNA, no pol, no Rep Order: Sepolyvirales Polyomaviridae Alphapolyomavirus +7 genera Betapolyomavirus Deltapolyomavirus Epsilonpolyomavirus Etapolyomavirus Gammapolyomavirus Thetapolyomavirus Zetapolyomavirus Order: Zurhausenvirales Papillomaviridae Firstpapillomavirinae 52 genera Alphapapillomavirus Betapapillomavirus Chipapillomavirus Deltapapillomavirus Dyochipapillomavirus Dyodeltapapillomavirus Dyoepsilonpapillomavirus Dyoetapapillomavirus Dyoiotapapillomavirus Dyokappapapillomavirus Dyolambdapapillomavirus Dyomupapillomavirus Dyonupapillomavirus Dyoomegapapillomavirus Dyoomikronpapillomavirus Dyophipapillomavirus Dyopipapillomavirus Dyopsipapillomavirus Dyorhopapillomavirus Dyosigmapapillomavirus Dyotaupapillomavirus Dyothetapapillomavirus Dyoupsilonpapillomavirus Dyoxipapillomavirus Dyozetapapillomavirus Epsilonpapillomavirus Etapapillomavirus Gammapapillomavirus Iotapapillomavirus Kappapapillomavirus Lambdapapillomavirus Mupapillomavirus Nupapillomavirus Omegapapillomavirus Omikronpapillomavirus Phipapillomavirus Pipapillomavirus Psipapillomavirus Rhopapillomavirus Sigmapapillomavirus Taupapillomavirus Thetapapillomavirus Treisdeltapapillomavirus Treisiotapapillomavirus Treisepsilonpapillomavirus Treisetapapillomavirus Treiskappapapillomavirus Treisthetapapillomavirus Treiszetapapillomavirus Upsilonpapillomavirus Xipapillomavirus !"Zetapapillomavirus":/preview_by_species/552 Secondpapillomavirinae Alefpapillomavirus Class: Quintoviricetes (PFAM PArvo-type Rep; Single jelly roll capsid) Order: Piccovirales Parvoviridae Hamaparvovirinae Brevihamaparvovirus Chaphamaparvovirus Hepanhamaparvovirus Ichthamaparvovirus Penstylhamaparvovirus Parvovirinae Amdoparvovirus !Artiparvovirus Aveparvovirus Bocaparvovirus Copiparvovirus Dependoparvovirus Erythroparvovirus Protoparvovirus Tetraparvovirus Densovirinae Aquambidensovirus Blattambidensovirus Diciambidensovirus Hemiambidensovirus Iteradensovirus Miniambidensovirus Muscodensovirus Pefuambidensovirus Protoambidensovirus Scindoambidensovirus Tetiambidensovirus Phylum: Commensaviricota Class: Cardeaviricetes (No rep, Single Jelly roll capsid) Order: Sanitavirales Anelloviridae Aleptorquevirus Alphatorquevirus Betatorquevirus Chitorquevirus Dalettorquevirus Deltatorquevirus Epsilontorquevirus Etatorquevirus Gammatorquevirus Gimeltorquevirus Gyrovirus Hetorquevirus Iotatorquevirus Kappatorquevirus Lambdatorquevirus Memtorquevirus Mutorquevirus Nutorquevirus Omegatorquevirus Omicrontorquevirus Pitorquevirus Psitorquevirus Rhotorquevirus Samektorquevirus Sigmatorquevirus Ettorquevirus Thetatorquevirus Upsilontorquevirus Wawtorquevirus Xitorquevirus Yodtorquevirus Zayintorquevirus Zetatorquevirus Phylum: Cressdnaviricota Class: Arfiviricetes (Cress-type Rep, SF3 Helicase; Single jelly roll capsid) Order: Baphyvirales Bacilladnaviridae Aberdnavirus Diatodnavirus Keisodnavirus Kieseladnavirus Protobacilladnavirus Puahadnavirus Seawadnavirus Order: Cirlivirales Circoviridae Circovirus Cyclovirus Vilyaviridae Andurilvirus +11 genera Angristvirus Aranruthvirus Arnorvirus Glamdringvirus Grondvirus Herugrimvirus Illuinvirus Ormalvirus Palantirivirus Ringilvirus Vingilotevirus Order: Cremevirales Smacoviridae Babosmacovirus 12 genera Bonzesmacovirus Bostasmacovirus Bovismacovirus Cosmacovirus Dragsmacovirus Drosmacovirus Felismacovirus Huchismacovirus Inpeasmacovirus Porprismacovirus Simismacovirus Order: Gredzevirales Gandrviridae Atripovirus +7 genera Meliavirus Oreadivirus Oreiadivirus Satyrivirus Sthenivirus Thisbivirus Thyiavirua Ouroboviridae Aretevirus +29 genera Boebeisivirus Demetevirus Doliovirus Dorisivirus Eurynomevirus Gorgovirus Heravirus Horusivirus Ioniavirus Kadmovirus Kreonivirus Lamposivirus Mantiovirus Naiadivirus Otosivirus Patroklovirus Perimedevirus Peronelivirus Persevirus Proteusivirus Pylenevirus Pythorivirus Rhipevirus Stentovirus Styxivirus Tantalovirus Taphiavirus Telemovirus Tethyvirus Order: Jormunvirales Draupnirviridae Armipotenivirus +41 genera Asperivirus Atroxivirus Audacivirus Audaxivirus Bellicusivirus Belligerivirus Citaivirus Citataivirus Citiorivirus Durusivirus Ferullusivirus Fervidivirus Funestivirus Incitativirus Incitatusivirus Malificivirus Mordaxivirus Nervillivirus Nocentianivirus Periculosovirus Pollentivirus Potensivirus Properatisvirus Rapidusivirus Robaratusivirus Roburiusivirus Strenuaivirus Strenuusivirus Tetricillivirus Torentivirus Valentivirus Validivirus Vegetinivirus Vegetivirus Vehemenivirus Velocianivirus Veloxivirus Violenivirus Viratusivirus Virilianivirus Volantivirus Order: Lineavirales Oomyviridae Avoomyvirus Nicoomyvirus Swoomyvirus Order: Mulpavirales Metaxyviridae Cofodevirus Nanoviridae Babuvirus Nanovirus Order: Recrevirales Redondoviridae Torbevirus Order: Ringavirales Pecoviridae Amaruvirus +7 genera Capamivirus Cinchivirus Intivirus Macochavirus Quillavirus Tambotovirus !Yaviravirus Order: Rivendellvirales Naryaviridae Menegrothvirus Nauglamirvirus Nimphelosvirus Phialvirus Order: Rohanvirales Nenyaviridae Angainorvirus Galvornvirus Mazarbulvirus Mithrilvirus Valinorvirus Order: Saturnivirales Kanorauviridae Chinseivirus +23 genera Chiunvirus Doseivirus Kaiwanvirus Kajamanuvirus Kronovirus Ninurtavirus Phainonvirus Raagevirus Sadornvirus Sagusvirus Sakkuthvirus Sanchirviurs Sanivirus Saothovirus Savurvirus Scythevirus Seetinvirus Shabtayvirus Shanivirus Sickelvirus Tuxingvirus Zohali Zuhalvirus Mahapunaviridae Acamarivirus +10 genera Amalthevirus Anthevirus Cursavirus Elnathivirus Enifivirus Fuluvirus Garivirus Himalivirus Janusivirus Thebevirus Class: Repensiviricetes (PFAM Gemini-type Rep, SF3 Helicase; Single jelly roll capsid) Order: Geplafuvirales Geminiviridae Becurtovirus Begomovirus Capulavirus Citlodavirus Curtovirus Eragrovirus Grablovirus Maldovirus Mastrevirus Mulcrilevirus Opunvirus Topilevirus Topocuvirus Turncurtovirus Genomoviridae Gemycircularvirus Gemyduguivirus Gemygorvirus Gemykibivirus Gemykolovirus Gemykrogvirus Gemykroznavirus Gemytondvirus Gemyvongvirus